RNA–Protein interactions for RNA: ENST00000263897.9

USE1-201, Transcript of unconventional SNARE in the ER 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USE1, Length 843 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-201ENST00000263897 HYPKQ9NX55 129 aa20.86■□□□□ 0.93
USE1-201ENST00000263897 GLTPD2A6NH11 291 aa20.85■□□□□ 0.93
USE1-201ENST00000263897 ELL2O00472 640 aaPredicted RBP20.85■□□□□ 0.93
USE1-201ENST00000263897 HOXA10P31260 410 aaPredicted RBP20.85■□□□□ 0.93
USE1-201ENST00000263897 CCDC27Q2M243 656 aa20.85■□□□□ 0.93
USE1-201ENST00000263897 ANKRD13DQ6ZTN6 518 aa20.85■□□□□ 0.93
USE1-201ENST00000263897 PLBD2Q8NHP8 589 aa20.85■□□□□ 0.93
USE1-201ENST00000263897 RRAGCQ9HB90 399 aa20.85■□□□□ 0.93
USE1-201ENST00000263897 RIC1Q4ADV7 1423 aa20.85■□□□□ 0.93
USE1-201ENST00000263897 CCDC93Q567U6 631 aa20.84■□□□□ 0.93
USE1-201ENST00000263897 NLRP10Q86W26 655 aa20.84■□□□□ 0.93
USE1-201ENST00000263897 WWC1Q8IX03 1113 aa20.84■□□□□ 0.93
USE1-201ENST00000263897 C8orf58Q8NAV2 365 aa20.84■□□□□ 0.93
USE1-201ENST00000263897 DICER1Q9UPY3 1922 aaKnown RBP20.83■□□□□ 0.93
USE1-201ENST00000263897 NCBP3Q53F19 620 aaKnown RBP20.83■□□□□ 0.93
USE1-201ENST00000263897 RPGRQ92834 1020 aaKnown RBP20.83■□□□□ 0.93
USE1-201ENST00000263897 NLRP3Q96P20 1036 aa20.83■□□□□ 0.93
USE1-201ENST00000263897 TNRC6CQ9HCJ0 1690 aaKnown RBP20.83■□□□□ 0.92
USE1-201ENST00000263897 RNF123Q5XPI4 1314 aa20.82■□□□□ 0.92
USE1-201ENST00000263897 DPY19L2Q6NUT2 758 aa20.82■□□□□ 0.92
USE1-201ENST00000263897 OLFM4Q6UX06 510 aa20.82■□□□□ 0.92
USE1-201ENST00000263897 RTKN2Q8IZC4 609 aa20.82■□□□□ 0.92
USE1-201ENST00000263897 CRAMP1Q96RY5 1269 aa20.82■□□□□ 0.92
USE1-201ENST00000263897 HSPA6P17066 643 aa20.81■□□□□ 0.92
USE1-201ENST00000263897 FKBP4Q02790 459 aaKnown RBP eCLIP20.81■□□□□ 0.92
USE1-201ENST00000263897 C3orf67Q6ZVT6 689 aa20.81■□□□□ 0.92
USE1-201ENST00000263897 C16orf71Q8IYS4 520 aaPredicted RBP20.81■□□□□ 0.92
USE1-201ENST00000263897 RBM17Q96I25 401 aaKnown RBP20.81■□□□□ 0.92
USE1-201ENST00000263897 CHMP4AQ9BY43 222 aa20.81■□□□□ 0.92
USE1-201ENST00000263897 TRMT112Q9UI30 125 aaKnown RBP20.81■□□□□ 0.92
USE1-201ENST00000263897 ANKRD36CQ5JPF3 1778 aa20.8■□□□□ 0.92
USE1-201ENST00000263897 CC2D2BQ6DHV5 1058 aa20.8■□□□□ 0.92
USE1-201ENST00000263897 RBM46Q8TBY0 533 aaKnown RBP20.8■□□□□ 0.92
USE1-201ENST00000263897 VEGFAP15692 232 aaPredicted RBP20.79■□□□□ 0.92
USE1-201ENST00000263897 SYNE4Q8N205 404 aa20.79■□□□□ 0.92
USE1-201ENST00000263897 ISCA1Q9BUE6 129 aa20.79■□□□□ 0.92
USE1-201ENST00000263897 PHAXQ9H814 394 aaKnown RBP20.79■□□□□ 0.92
USE1-201ENST00000263897 TSPYL6Q8N831 410 aa20.78■□□□□ 0.92
USE1-201ENST00000263897 TSR2Q969E8 191 aaKnown RBP20.78■□□□□ 0.92
USE1-201ENST00000263897 TIAM2Q8IVF5 1701 aa20.78■□□□□ 0.92
USE1-201ENST00000263897 IL16Q14005 1332 aa20.78■□□□□ 0.92
USE1-201ENST00000263897 SH3TC1Q8TE82 1336 aa20.78■□□□□ 0.92
USE1-201ENST00000263897 HCLS1P14317 486 aaPredicted RBP20.77■□□□□ 0.92
USE1-201ENST00000263897 TRIM28Q13263 835 aaKnown RBP20.77■□□□□ 0.92
USE1-201ENST00000263897 CCDC30Q5VVM6 783 aa20.77■□□□□ 0.92
USE1-201ENST00000263897 ZNF277Q9NRM2 450 aaPredicted RBP20.77■□□□□ 0.92
USE1-201ENST00000263897 POTECB2RU33 542 aa20.76■□□□□ 0.91
USE1-201ENST00000263897 ATP5J2-PTCD1G3V325 749 aa20.76■□□□□ 0.91
USE1-201ENST00000263897 GRIPAP1Q4V328 841 aa20.76■□□□□ 0.91
USE1-201ENST00000263897 RIC3Q7Z5B4 369 aa20.76■□□□□ 0.91
USE1-201ENST00000263897 PSMD1Q99460 953 aa20.76■□□□□ 0.91
USE1-201ENST00000263897 GOLGA2Q08379 1002 aa20.75■□□□□ 0.91
USE1-201ENST00000263897 TCERG1O14776 1098 aaKnown RBP20.74■□□□□ 0.91
USE1-201ENST00000263897 PPEF1O14829 653 aaPredicted RBP20.74■□□□□ 0.91
USE1-201ENST00000263897 FSTL1Q12841 308 aa20.74■□□□□ 0.91
USE1-201ENST00000263897 SNED1Q8TER0 1413 aa20.74■□□□□ 0.91
USE1-201ENST00000263897 ZNF428Q96B54 188 aa20.74■□□□□ 0.91
USE1-201ENST00000263897 SALL2Q9Y467 1007 aaPredicted RBP20.74■□□□□ 0.91
USE1-201ENST00000263897 BBOX1O75936 387 aa20.73■□□□□ 0.91
USE1-201ENST00000263897 DDNO94850 711 aaPredicted RBP20.73■□□□□ 0.91
USE1-201ENST00000263897 IARSP41252 1262 aaKnown RBP20.73■□□□□ 0.91
USE1-201ENST00000263897 WDR63Q8IWG1 891 aa20.73■□□□□ 0.91
USE1-201ENST00000263897 FAM9BQ8IZU0 186 aa20.73■□□□□ 0.91
USE1-201ENST00000263897 FAM89AQ96GI7 184 aa20.73■□□□□ 0.91
USE1-201ENST00000263897 TWISTNBQ3B726 338 aaPredicted RBP20.72■□□□□ 0.91
USE1-201ENST00000263897 ATP6V0A2Q9Y487 856 aa20.72■□□□□ 0.91
USE1-201ENST00000263897 ABCC4O15439 1325 aa20.72■□□□□ 0.91
USE1-201ENST00000263897 WDR90Q96KV7 1748 aa20.71■□□□□ 0.91
USE1-201ENST00000263897 DDX46Q7L014 1031 aaKnown RBP20.71■□□□□ 0.91
USE1-201ENST00000263897 TMX4Q9H1E5 349 aaPredicted RBP20.71■□□□□ 0.91
USE1-201ENST00000263897 LAMB2P55268 1798 aa20.7■□□□□ 0.9
USE1-201ENST00000263897 DDX58O95786 925 aaKnown RBP20.7■□□□□ 0.9
USE1-201ENST00000263897 APLP1P51693 650 aa20.7■□□□□ 0.9
USE1-201ENST00000263897 SLC51AQ86UW1 340 aa20.7■□□□□ 0.9
USE1-201ENST00000263897 SP8Q8IXZ3 490 aa20.7■□□□□ 0.9
USE1-201ENST00000263897 SMC1BQ8NDV3 1235 aa20.7■□□□□ 0.9
USE1-201ENST00000263897 STK31Q9BXU1 1019 aa20.7■□□□□ 0.9
USE1-201ENST00000263897 FZD9O00144 591 aa20.69■□□□□ 0.9
USE1-201ENST00000263897 SF3B3Q15393 1217 aaKnown RBP20.69■□□□□ 0.9
USE1-201ENST00000263897 JDP2Q8WYK2 163 aa20.69■□□□□ 0.9
USE1-201ENST00000263897 MYD88Q99836 296 aa20.69■□□□□ 0.9
USE1-201ENST00000263897 METTL22Q9BUU2 404 aaPredicted RBP20.69■□□□□ 0.9
USE1-201ENST00000263897 RTL5Q5HYW3 569 aaPredicted RBP20.68■□□□□ 0.9
USE1-201ENST00000263897 ZBTB38Q8NAP3 1195 aaPredicted RBP20.68■□□□□ 0.9
USE1-201ENST00000263897 CCDC191Q8NCU4 936 aa20.68■□□□□ 0.9
USE1-201ENST00000263897 IRS4O14654 1257 aaPredicted RBP20.67■□□□□ 0.9
USE1-201ENST00000263897 SLC4A2P04920 1241 aa20.67■□□□□ 0.9
USE1-201ENST00000263897 GRAPQ13588 217 aa20.67■□□□□ 0.9
USE1-201ENST00000263897 KSR2Q6VAB6 950 aa20.67■□□□□ 0.9
USE1-201ENST00000263897 GRAPLQ8TC17 118 aaPredicted RBP20.67■□□□□ 0.9
USE1-201ENST00000263897 L3MBTL3Q96JM7 780 aaPredicted RBP20.67■□□□□ 0.9
USE1-201ENST00000263897 FANCIQ9NVI1 1328 aa20.67■□□□□ 0.9
USE1-201ENST00000263897 LARGE2Q8N3Y3 721 aa20.66■□□□□ 0.9
USE1-201ENST00000263897 VPS33BQ9H267 617 aa20.66■□□□□ 0.9
USE1-201ENST00000263897 MAP3K2Q9Y2U5 619 aa20.66■□□□□ 0.9
USE1-201ENST00000263897 ZNF541Q9H0D2 1346 aa20.66■□□□□ 0.9
USE1-201ENST00000263897 DDX60Q8IY21 1712 aaKnown RBP20.66■□□□□ 0.9
USE1-201ENST00000263897 TAF1P21675 1872 aa20.66■□□□□ 0.9
USE1-201ENST00000263897 PI4KAP2A4QPH2 592 aa20.65■□□□□ 0.9
USE1-201ENST00000263897 VAMP4O75379 141 aa20.65■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms