RNA–Protein interactions for RNA: ENST00000263694.8

SNRNP40-201, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNRNP40, Length 1,597 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-201ENST00000263694 RGPD3A6NKT7 1758 aaPredicted RBP12.25□□□□□ -0.45
SNRNP40-201ENST00000263694 RGPD4Q7Z3J3 1758 aa12.25□□□□□ -0.45
SNRNP40-201ENST00000263694 TUBGCP6Q96RT7 1819 aa12.25□□□□□ -0.45
SNRNP40-201ENST00000263694 A0A087WZG4 1122 aa12.25□□□□□ -0.45
SNRNP40-201ENST00000263694 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.25□□□□□ -0.45
SNRNP40-201ENST00000263694 IGHDP01880 384 aa12.25□□□□□ -0.45
SNRNP40-201ENST00000263694 ISCA1Q9BUE6 129 aa12.25□□□□□ -0.45
SNRNP40-201ENST00000263694 ANO8Q9HCE9 1232 aaPredicted RBP12.25□□□□□ -0.45
SNRNP40-201ENST00000263694 C9orf78Q9NZ63 289 aaPredicted RBP12.25□□□□□ -0.45
SNRNP40-201ENST00000263694 TFCP2L1Q9NZI6 479 aa12.25□□□□□ -0.45
SNRNP40-201ENST00000263694 ANKRD36CQ5JPF3 1778 aa12.24□□□□□ -0.45
SNRNP40-201ENST00000263694 BCORQ6W2J9 1755 aa12.24□□□□□ -0.45
SNRNP40-201ENST00000263694 FAM177BA6PVY3 158 aa12.24□□□□□ -0.45
SNRNP40-201ENST00000263694 UBTFL1P0CB47 393 aaPredicted RBP12.24□□□□□ -0.45
SNRNP40-201ENST00000263694 BICDL1Q6ZP65 573 aa12.24□□□□□ -0.45
SNRNP40-201ENST00000263694 SYNE4Q8N205 404 aa12.24□□□□□ -0.45
SNRNP40-201ENST00000263694 NARFQ9UHQ1 456 aa12.24□□□□□ -0.45
SNRNP40-201ENST00000263694 LRRFIP2Q9Y608 721 aaKnown RBP12.24□□□□□ -0.45
SNRNP40-201ENST00000263694 GRM8O00222 908 aa12.23□□□□□ -0.45
SNRNP40-201ENST00000263694 ZPR1O75312 459 aa12.23□□□□□ -0.45
SNRNP40-201ENST00000263694 GNAI3P08754 354 aa12.23□□□□□ -0.45
SNRNP40-201ENST00000263694 RFC4P35249 363 aa12.23□□□□□ -0.45
SNRNP40-201ENST00000263694 SIRT2Q8IXJ6 389 aa12.23□□□□□ -0.45
SNRNP40-201ENST00000263694 ZNF34Q8IZ26 560 aa12.23□□□□□ -0.45
SNRNP40-201ENST00000263694 CWC25Q9NXE8 425 aaPredicted RBP12.23□□□□□ -0.45
SNRNP40-201ENST00000263694 UBN2Q6ZU65 1347 aa12.23□□□□□ -0.45
SNRNP40-201ENST00000263694 GNAI2P04899 355 aa12.22□□□□□ -0.45
SNRNP40-201ENST00000263694 TBC1D9BQ66K14 1250 aa12.22□□□□□ -0.45
SNRNP40-201ENST00000263694 ILDR2Q71H61 639 aa12.22□□□□□ -0.45
SNRNP40-201ENST00000263694 UBE3BQ7Z3V4 1068 aa12.22□□□□□ -0.45
SNRNP40-201ENST00000263694 NLRP10Q86W26 655 aa12.22□□□□□ -0.45
SNRNP40-201ENST00000263694 CCDC191Q8NCU4 936 aa12.22□□□□□ -0.45
SNRNP40-201ENST00000263694 UPF1Q92900 1129 aaKnown RBP eCLIP12.22□□□□□ -0.45
SNRNP40-201ENST00000263694 SUCLG2Q96I99 432 aa12.22□□□□□ -0.45
SNRNP40-201ENST00000263694 CHMP4BQ9H444 224 aaKnown RBP12.22□□□□□ -0.45
SNRNP40-201ENST00000263694 SSFA2P28290 1259 aa12.22□□□□□ -0.45
SNRNP40-201ENST00000263694 AAMPQ13685 434 aa12.22□□□□□ -0.45
SNRNP40-201ENST00000263694 HSP90AB3PQ58FF7 597 aa12.22□□□□□ -0.45
SNRNP40-201ENST00000263694 EPHA10Q5JZY3 1008 aa12.22□□□□□ -0.45
SNRNP40-201ENST00000263694 COL23A1Q86Y22 540 aaPredicted RBP12.22□□□□□ -0.45
SNRNP40-201ENST00000263694 FAM89AQ96GI7 184 aa12.22□□□□□ -0.45
SNRNP40-201ENST00000263694 KAZALD1Q96I82 304 aa12.22□□□□□ -0.45
SNRNP40-201ENST00000263694 NIP7Q9Y221 180 aaKnown RBP eCLIP12.22□□□□□ -0.45
SNRNP40-201ENST00000263694 USP42Q9H9J4 1324 aaKnown RBP12.21□□□□□ -0.45
SNRNP40-201ENST00000263694 SCN7AQ01118 1682 aa12.21□□□□□ -0.45
SNRNP40-201ENST00000263694 H7C1W4 665 aa12.21□□□□□ -0.46
SNRNP40-201ENST00000263694 CASP7P55210 303 aa12.21□□□□□ -0.46
SNRNP40-201ENST00000263694 TRIM28Q13263 835 aaKnown RBP12.21□□□□□ -0.46
SNRNP40-201ENST00000263694 SUSD4Q5VX71 490 aa12.21□□□□□ -0.46
SNRNP40-201ENST00000263694 CEP85Q6P2H3 762 aa12.21□□□□□ -0.46
SNRNP40-201ENST00000263694 CCDC125Q86Z20 511 aa12.21□□□□□ -0.46
SNRNP40-201ENST00000263694 UTYO14607 1347 aa12.21□□□□□ -0.46
SNRNP40-201ENST00000263694 PNPLA7Q6ZV29 1317 aa12.21□□□□□ -0.46
SNRNP40-201ENST00000263694 SLC15A2Q16348 729 aa12.2□□□□□ -0.46
SNRNP40-201ENST00000263694 CLEC4GQ6UXB4 293 aa12.2□□□□□ -0.46
SNRNP40-201ENST00000263694 TRMT112Q9UI30 125 aaKnown RBP12.2□□□□□ -0.46
SNRNP40-201ENST00000263694 ZNF652Q9Y2D9 606 aa12.2□□□□□ -0.46
SNRNP40-201ENST00000263694 PNMA6EA0A0J9YXQ4 647 aa12.19□□□□□ -0.46
SNRNP40-201ENST00000263694 GYS1P13807 737 aa12.19□□□□□ -0.46
SNRNP40-201ENST00000263694 ANKRD44Q8N8A2 993 aa12.19□□□□□ -0.46
SNRNP40-201ENST00000263694 PDGFDQ9GZP0 370 aaPredicted RBP12.19□□□□□ -0.46
SNRNP40-201ENST00000263694 BICC1Q9H694 974 aaKnown RBP12.19□□□□□ -0.46
SNRNP40-201ENST00000263694 STK32BQ9NY57 414 aa12.19□□□□□ -0.46
SNRNP40-201ENST00000263694 PCCAP05165 728 aaPredicted RBP12.18□□□□□ -0.46
SNRNP40-201ENST00000263694 ATP8B2P98198 1209 aa12.18□□□□□ -0.46
SNRNP40-201ENST00000263694 SKAP1Q86WV1 359 aa12.18□□□□□ -0.46
SNRNP40-201ENST00000263694 NUTM1Q86Y26 1132 aa12.18□□□□□ -0.46
SNRNP40-201ENST00000263694 CCDC24Q8N4L8 307 aa12.18□□□□□ -0.46
SNRNP40-201ENST00000263694 ZBTB38Q8NAP3 1195 aaPredicted RBP12.18□□□□□ -0.46
SNRNP40-201ENST00000263694 KDM2BQ8NHM5 1336 aa12.18□□□□□ -0.46
SNRNP40-201ENST00000263694 FOXO4P98177 505 aa12.18□□□□□ -0.46
SNRNP40-201ENST00000263694 NFIXQ14938 502 aa12.18□□□□□ -0.46
SNRNP40-201ENST00000263694 PPP1R42Q7Z4L9 355 aa12.18□□□□□ -0.46
SNRNP40-201ENST00000263694 RPAP2Q8IXW5 612 aaPredicted RBP12.18□□□□□ -0.46
SNRNP40-201ENST00000263694 SETDB2Q96T68 719 aa12.18□□□□□ -0.46
SNRNP40-201ENST00000263694 UTP14AQ9BVJ6 771 aaKnown RBP12.18□□□□□ -0.46
SNRNP40-201ENST00000263694 RWDD1Q9H446 243 aaPredicted RBP12.18□□□□□ -0.46
SNRNP40-201ENST00000263694 NTSR2O95665 410 aa12.17□□□□□ -0.46
SNRNP40-201ENST00000263694 HCLS1P14317 486 aaPredicted RBP12.17□□□□□ -0.46
SNRNP40-201ENST00000263694 HMGB2P26583 209 aaKnown RBP12.17□□□□□ -0.46
SNRNP40-201ENST00000263694 HDAC1Q13547 482 aaPredicted RBP12.17□□□□□ -0.46
SNRNP40-201ENST00000263694 MSL1Q68DK7 614 aa12.17□□□□□ -0.46
SNRNP40-201ENST00000263694 IBTKQ9P2D0 1353 aaPredicted RBP12.16□□□□□ -0.46
SNRNP40-201ENST00000263694 IRS4O14654 1257 aaPredicted RBP12.16□□□□□ -0.46
SNRNP40-201ENST00000263694 ERFEQ4G0M1 354 aa12.16□□□□□ -0.46
SNRNP40-201ENST00000263694 PARP10Q53GL7 1025 aa12.16□□□□□ -0.46
SNRNP40-201ENST00000263694 CCDC85AQ96PX6 553 aaPredicted RBP12.16□□□□□ -0.46
SNRNP40-201ENST00000263694 SRGAP3O43295 1099 aa12.15□□□□□ -0.46
SNRNP40-201ENST00000263694 LMBR1LQ6UX01 489 aa12.15□□□□□ -0.46
SNRNP40-201ENST00000263694 FLAD1Q8NFF5 587 aa12.15□□□□□ -0.46
SNRNP40-201ENST00000263694 KLHDC4Q8TBB5 520 aa12.15□□□□□ -0.46
SNRNP40-201ENST00000263694 BCL11AQ9H165 835 aa12.15□□□□□ -0.46
SNRNP40-201ENST00000263694 SH3TC1Q8TE82 1336 aa12.14□□□□□ -0.47
SNRNP40-201ENST00000263694 APBB1O00213 710 aa12.14□□□□□ -0.47
SNRNP40-201ENST00000263694 RGL2O15211 777 aa12.14□□□□□ -0.47
SNRNP40-201ENST00000263694 TM4SF1P30408 202 aa12.14□□□□□ -0.47
SNRNP40-201ENST00000263694 DDR1Q08345 913 aa12.14□□□□□ -0.47
SNRNP40-201ENST00000263694 CENPQQ7L2Z9 268 aaPredicted RBP12.14□□□□□ -0.47
SNRNP40-201ENST00000263694 NBPF5PQ86XG9 351 aaPredicted RBP12.14□□□□□ -0.47
SNRNP40-201ENST00000263694 SSH3Q8TE77 659 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms