RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 TPCN1Q9ULQ1 816 aa15.05■□□□□ -0
LIG1-201ENST00000263274 DDX58O95786 925 aaKnown RBP15.04■□□□□ -0
LIG1-201ENST00000263274 CCDC192P0DO97 292 aa15.04■□□□□ -0
LIG1-201ENST00000263274 NEXNQ0ZGT2 675 aa15.04■□□□□ -0
LIG1-201ENST00000263274 RNF20Q5VTR2 975 aa15.04■□□□□ -0
LIG1-201ENST00000263274 CDC37L1Q7L3B6 337 aa15.04■□□□□ -0
LIG1-201ENST00000263274 IP6K1Q92551 441 aa15.04■□□□□ -0
LIG1-201ENST00000263274 ZSCAN31Q96LW9 406 aaPredicted RBP15.04■□□□□ -0
LIG1-201ENST00000263274 TCHHQ07283 1943 aa15.04■□□□□ -0
LIG1-201ENST00000263274 CCDC171Q6TFL3 1326 aa15.04■□□□□ -0
LIG1-201ENST00000263274 C3P01024 1663 aa15.04■□□□□ -0
LIG1-201ENST00000263274 PEAK1Q9H792 1746 aa15.04■□□□□ -0
LIG1-201ENST00000263274 KDM4AO75164 1064 aa15.04■□□□□ -0
LIG1-201ENST00000263274 KSR2Q6VAB6 950 aa15.04■□□□□ -0
LIG1-201ENST00000263274 ERC1Q8IUD2 1116 aa15.04■□□□□ -0
LIG1-201ENST00000263274 PLEKHG1Q9ULL1 1385 aa15.04■□□□□ -0
LIG1-201ENST00000263274 SPATA32Q96LK8 384 aa15.04■□□□□ -0
LIG1-201ENST00000263274 NUP62CLQ9H1M0 184 aa15.04■□□□□ -0
LIG1-201ENST00000263274 TTC41PQ6P2S7 1318 aa15.04■□□□□ -0
LIG1-201ENST00000263274 A0A0D9SFI3 127 aa15.03■□□□□ -0
LIG1-201ENST00000263274 GRM8O00222 908 aa15.03■□□□□ -0
LIG1-201ENST00000263274 PSMA5P28066 241 aa15.03■□□□□ -0
LIG1-201ENST00000263274 VPS53Q5VIR6 699 aa15.03■□□□□ -0
LIG1-201ENST00000263274 TNMDQ9H2S6 317 aa15.03■□□□□ -0
LIG1-201ENST00000263274 SH2B1Q9NRF2 756 aaPredicted RBP15.03■□□□□ -0
LIG1-201ENST00000263274 NLRP2Q9NX02 1062 aa15.03■□□□□ -0
LIG1-201ENST00000263274 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.03■□□□□ -0
LIG1-201ENST00000263274 CSB-PGBD3P0DP91 1061 aa15.03■□□□□ -0
LIG1-201ENST00000263274 CHAF1AQ13111 956 aaPredicted RBP15.03■□□□□ -0
LIG1-201ENST00000263274 MON2Q7Z3U7 1717 aa15.03■□□□□ -0
LIG1-201ENST00000263274 LUZP1Q86V48 1076 aa15.03■□□□□ -0
LIG1-201ENST00000263274 MYD88Q99836 296 aa15.03■□□□□ -0
LIG1-201ENST00000263274 NRXN3Q9Y4C0 1643 aa15.03■□□□□ -0
LIG1-201ENST00000263274 LIG1P18858 919 aa15.02■□□□□ -0
LIG1-201ENST00000263274 UVSSAQ2YD98 709 aa15.02■□□□□ -0
LIG1-201ENST00000263274 NEUROD6Q96NK8 337 aa15.02■□□□□ -0
LIG1-201ENST00000263274 TRIM5Q9C035 493 aa15.02■□□□□ -0
LIG1-201ENST00000263274 DACT1Q9NYF0 836 aa15.02■□□□□ -0
LIG1-201ENST00000263274 HDAC5Q9UQL6 1122 aa15.02■□□□□ -0
LIG1-201ENST00000263274 TAF6LQ9Y6J9 622 aa15.02■□□□□ -0
LIG1-201ENST00000263274 AKAP4Q5JQC9 854 aa15.02■□□□□ -0
LIG1-201ENST00000263274 ATP5J2-PTCD1G3V325 749 aa15.02□□□□□ -0.01
LIG1-201ENST00000263274 RNMTO43148 476 aaKnown RBP15.02□□□□□ -0.01
LIG1-201ENST00000263274 PTCD1O75127 700 aaKnown RBP15.02□□□□□ -0.01
LIG1-201ENST00000263274 TTC6Q86TZ1 520 aa15.02□□□□□ -0.01
LIG1-201ENST00000263274 ANKLE2Q86XL3 938 aa15.02□□□□□ -0.01
LIG1-201ENST00000263274 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.01□□□□□ -0.01
LIG1-201ENST00000263274 DYNC1I1O14576 645 aa15.01□□□□□ -0.01
LIG1-201ENST00000263274 SLC27A2O14975 620 aa15.01□□□□□ -0.01
LIG1-201ENST00000263274 MAP3K11Q16584 847 aa15.01□□□□□ -0.01
LIG1-201ENST00000263274 LARP1Q6PKG0 1096 aaKnown RBP15.01□□□□□ -0.01
LIG1-201ENST00000263274 CCDC129Q6ZRS4 1044 aa15.01□□□□□ -0.01
LIG1-201ENST00000263274 GIGYF1O75420 1035 aaPredicted RBP15.01□□□□□ -0.01
LIG1-201ENST00000263274 CHGBP05060 677 aa15.01□□□□□ -0.01
LIG1-201ENST00000263274 ZSWIM6Q9HCJ5 1215 aa15.01□□□□□ -0.01
LIG1-201ENST00000263274 ZNF330Q9Y3S2 320 aaPredicted RBP15.01□□□□□ -0.01
LIG1-201ENST00000263274 GOLGA6L6A8MZA4 724 aa15.01□□□□□ -0.01
LIG1-201ENST00000263274 SASH1O94885 1247 aa15.01□□□□□ -0.01
LIG1-201ENST00000263274 ANKRD24Q8TF21 1146 aa15□□□□□ -0.01
LIG1-201ENST00000263274 AGLP35573 1532 aa15□□□□□ -0.01
LIG1-201ENST00000263274 COPS6Q7L5N1 327 aa15□□□□□ -0.01
LIG1-201ENST00000263274 ORAI2Q96SN7 254 aa15□□□□□ -0.01
LIG1-201ENST00000263274 ADCY9O60503 1353 aa15□□□□□ -0.01
LIG1-201ENST00000263274 JAK2O60674 1132 aa14.99□□□□□ -0.01
LIG1-201ENST00000263274 ZNF589Q86UQ0 364 aaPredicted RBP14.99□□□□□ -0.01
LIG1-201ENST00000263274 PIBF1Q8WXW3 757 aa14.99□□□□□ -0.01
LIG1-201ENST00000263274 ZNF592Q92610 1267 aa14.99□□□□□ -0.01
LIG1-201ENST00000263274 MAP7D2Q96T17 732 aa14.99□□□□□ -0.01
LIG1-201ENST00000263274 BABAM1Q9NWV8 329 aa14.99□□□□□ -0.01
LIG1-201ENST00000263274 PDCP20941 246 aa14.99□□□□□ -0.01
LIG1-201ENST00000263274 GUCY1B3Q02153 619 aa14.99□□□□□ -0.01
LIG1-201ENST00000263274 NECTIN1Q15223 517 aa14.99□□□□□ -0.01
LIG1-201ENST00000263274 DDX46Q7L014 1031 aaKnown RBP14.99□□□□□ -0.01
LIG1-201ENST00000263274 LINS1Q8NG48 757 aa14.99□□□□□ -0.01
LIG1-201ENST00000263274 XAGE3Q8WTP9 111 aa14.99□□□□□ -0.01
LIG1-201ENST00000263274 SEC62Q99442 399 aaKnown RBP14.99□□□□□ -0.01
LIG1-201ENST00000263274 PTGS1P23219 599 aa14.99□□□□□ -0.01
LIG1-201ENST00000263274 ALDH1L1O75891 902 aa14.98□□□□□ -0.01
LIG1-201ENST00000263274 GCP02774 474 aa14.98□□□□□ -0.01
LIG1-201ENST00000263274 ANO6Q4KMQ2 910 aa14.98□□□□□ -0.01
LIG1-201ENST00000263274 UBE3BQ7Z3V4 1068 aa14.98□□□□□ -0.01
LIG1-201ENST00000263274 RAPGEF4Q8WZA2 1011 aa14.98□□□□□ -0.01
LIG1-201ENST00000263274 PYCARDQ9ULZ3 195 aa14.98□□□□□ -0.01
LIG1-201ENST00000263274 NRKQ7Z2Y5 1582 aa14.98□□□□□ -0.01
LIG1-201ENST00000263274 HIP1O00291 1037 aa14.98□□□□□ -0.01
LIG1-201ENST00000263274 TERF1P54274 439 aa14.98□□□□□ -0.01
LIG1-201ENST00000263274 TYRO3Q06418 890 aa14.98□□□□□ -0.01
LIG1-201ENST00000263274 CCDC186Q7Z3E2 898 aa14.98□□□□□ -0.01
LIG1-201ENST00000263274 SETD1AO15047 1707 aaKnown RBP14.97□□□□□ -0.01
LIG1-201ENST00000263274 AP5Z1O43299 807 aa14.97□□□□□ -0.01
LIG1-201ENST00000263274 CCT2P78371 535 aaKnown RBP14.97□□□□□ -0.01
LIG1-201ENST00000263274 NFATC2IPQ8NCF5 419 aa14.97□□□□□ -0.01
LIG1-201ENST00000263274 KCNH5Q8NCM2 988 aa14.97□□□□□ -0.01
LIG1-201ENST00000263274 AKAP12Q02952 1782 aa14.97□□□□□ -0.01
LIG1-201ENST00000263274 CBX1P83916 185 aa14.97□□□□□ -0.01
LIG1-201ENST00000263274 AMOTQ4VCS5 1084 aa14.97□□□□□ -0.01
LIG1-201ENST00000263274 KIF3AQ9Y496 699 aa14.97□□□□□ -0.01
LIG1-201ENST00000263274 ST3GAL1Q11201 340 aa14.96□□□□□ -0.01
LIG1-201ENST00000263274 TMEM87AQ8NBN3 555 aa14.96□□□□□ -0.01
LIG1-201ENST00000263274 BBXQ8WY36 941 aaPredicted RBP14.96□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms