RNA–Protein interactions for RNA: ENST00000262188.12

SMARCD3-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCD3, Length 1,993 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-201ENST00000262188 PDGFDQ9GZP0 370 aaPredicted RBP34.58■■■■□ 3.13
SMARCD3-201ENST00000262188 ZNF34Q8IZ26 560 aa34.58■■■■□ 3.13
SMARCD3-201ENST00000262188 C9orf78Q9NZ63 289 aaPredicted RBP34.58■■■■□ 3.13
SMARCD3-201ENST00000262188 NIP7Q9Y221 180 aaKnown RBP eCLIP34.58■■■■□ 3.13
SMARCD3-201ENST00000262188 NLRP10Q86W26 655 aa34.57■■■■□ 3.12
SMARCD3-201ENST00000262188 CWC25Q9NXE8 425 aaPredicted RBP34.56■■■■□ 3.12
SMARCD3-201ENST00000262188 HMGB2P26583 209 aaKnown RBP34.56■■■■□ 3.12
SMARCD3-201ENST00000262188 HSP90AB3PQ58FF7 597 aa34.56■■■■□ 3.12
SMARCD3-201ENST00000262188 ZNF652Q9Y2D9 606 aa34.56■■■■□ 3.12
SMARCD3-201ENST00000262188 GYS1P13807 737 aa34.55■■■■□ 3.12
SMARCD3-201ENST00000262188 SYNE4Q8N205 404 aa34.55■■■■□ 3.12
SMARCD3-201ENST00000262188 GRM8O00222 908 aa34.54■■■■□ 3.12
SMARCD3-201ENST00000262188 PCDHB15Q9Y5E8 787 aa34.54■■■■□ 3.12
SMARCD3-201ENST00000262188 UBE3BQ7Z3V4 1068 aa34.54■■■■□ 3.12
SMARCD3-201ENST00000262188 CCDC191Q8NCU4 936 aa34.54■■■■□ 3.12
SMARCD3-201ENST00000262188 CLEC4GQ6UXB4 293 aa34.53■■■■□ 3.12
SMARCD3-201ENST00000262188 SUSD4Q5VX71 490 aa34.53■■■■□ 3.12
SMARCD3-201ENST00000262188 UBTFL1P0CB47 393 aaPredicted RBP34.52■■■■□ 3.12
SMARCD3-201ENST00000262188 TRIM28Q13263 835 aaKnown RBP34.51■■■■□ 3.12
SMARCD3-201ENST00000262188 FAM89AQ96GI7 184 aa34.51■■■■□ 3.12
SMARCD3-201ENST00000262188 LRRFIP2Q9Y608 721 aaKnown RBP34.51■■■■□ 3.12
SMARCD3-201ENST00000262188 MSL1Q68DK7 614 aa34.5■■■■□ 3.11
SMARCD3-201ENST00000262188 GNAI3P08754 354 aa34.49■■■■□ 3.11
SMARCD3-201ENST00000262188 B4GALNT3Q6L9W6 998 aa34.49■■■■□ 3.11
SMARCD3-201ENST00000262188 SUCLG2Q96I99 432 aa34.49■■■■□ 3.11
SMARCD3-201ENST00000262188 NFIXQ14938 502 aa34.48■■■■□ 3.11
SMARCD3-201ENST00000262188 CASP7P55210 303 aa34.47■■■■□ 3.11
SMARCD3-201ENST00000262188 FLAD1Q8NFF5 587 aa34.47■■■■□ 3.11
SMARCD3-201ENST00000262188 TRMT112Q9UI30 125 aaKnown RBP34.47■■■■□ 3.11
SMARCD3-201ENST00000262188 H7C1W4 665 aa34.47■■■■□ 3.11
SMARCD3-201ENST00000262188 KAZALD1Q96I82 304 aa34.47■■■■□ 3.11
SMARCD3-201ENST00000262188 UTYO14607 1347 aa34.46■■■■□ 3.11
SMARCD3-201ENST00000262188 NUTM1Q86Y26 1132 aa34.46■■■■□ 3.11
SMARCD3-201ENST00000262188 GNAI2P04899 355 aa34.45■■■■□ 3.11
SMARCD3-201ENST00000262188 EPHA10Q5JZY3 1008 aa34.45■■■■□ 3.11
SMARCD3-201ENST00000262188 SETDB2Q96T68 719 aa34.45■■■■□ 3.11
SMARCD3-201ENST00000262188 CCDC24Q8N4L8 307 aa34.45■■■■□ 3.11
SMARCD3-201ENST00000262188 PPP4R2Q9NY27 417 aa34.43■■■■□ 3.1
SMARCD3-201ENST00000262188 NTSR2O95665 410 aa34.43■■■■□ 3.1
SMARCD3-201ENST00000262188 ZBTB38Q8NAP3 1195 aaPredicted RBP34.43■■■■□ 3.1
SMARCD3-201ENST00000262188 CHMP4BQ9H444 224 aaKnown RBP34.43■■■■□ 3.1
SMARCD3-201ENST00000262188 R3HDM1Q15032 1099 aaKnown RBP34.42■■■■□ 3.1
SMARCD3-201ENST00000262188 PARP10Q53GL7 1025 aa34.42■■■■□ 3.1
SMARCD3-201ENST00000262188 UTP14AQ9BVJ6 771 aaKnown RBP34.42■■■■□ 3.1
SMARCD3-201ENST00000262188 QSER1Q2KHR3 1735 aa34.42■■■■□ 3.1
SMARCD3-201ENST00000262188 RGL2O15211 777 aa34.42■■■■□ 3.1
SMARCD3-201ENST00000262188 PCCAP05165 728 aaPredicted RBP34.42■■■■□ 3.1
SMARCD3-201ENST00000262188 SIRT2Q8IXJ6 389 aa34.42■■■■□ 3.1
SMARCD3-201ENST00000262188 BICC1Q9H694 974 aaKnown RBP34.42■■■■□ 3.1
SMARCD3-201ENST00000262188 DDR1Q08345 913 aa34.4■■■■□ 3.1
SMARCD3-201ENST00000262188 CEP85Q6P2H3 762 aa34.4■■■■□ 3.1
SMARCD3-201ENST00000262188 IBTKQ9P2D0 1353 aaPredicted RBP34.39■■■■□ 3.1
SMARCD3-201ENST00000262188 TM4SF1P30408 202 aa34.39■■■■□ 3.1
SMARCD3-201ENST00000262188 CCDC136Q96JN2 1154 aa34.39■■■■□ 3.1
SMARCD3-201ENST00000262188 PSDA5PKW4 1024 aaPredicted RBP34.38■■■■□ 3.09
SMARCD3-201ENST00000262188 HCLS1P14317 486 aaPredicted RBP34.38■■■■□ 3.09
SMARCD3-201ENST00000262188 PPP1R42Q7Z4L9 355 aa34.38■■■■□ 3.09
SMARCD3-201ENST00000262188 COL24A1Q17RW2 1714 aa34.38■■■■□ 3.09
SMARCD3-201ENST00000262188 IGHDP01880 384 aa34.38■■■■□ 3.09
SMARCD3-201ENST00000262188 ERFEQ4G0M1 354 aa34.38■■■■□ 3.09
SMARCD3-201ENST00000262188 NBPF5PQ86XG9 351 aaPredicted RBP34.38■■■■□ 3.09
SMARCD3-201ENST00000262188 PNMA6EA0A0J9YXQ4 647 aa34.37■■■■□ 3.09
SMARCD3-201ENST00000262188 IRS4O14654 1257 aaPredicted RBP34.36■■■■□ 3.09
SMARCD3-201ENST00000262188 ANKRD44Q8N8A2 993 aa34.36■■■■□ 3.09
SMARCD3-201ENST00000262188 SH3TC1Q8TE82 1336 aa34.36■■■■□ 3.09
SMARCD3-201ENST00000262188 AAMPQ13685 434 aa34.36■■■■□ 3.09
SMARCD3-201ENST00000262188 CARMIL3Q8ND23 1372 aa34.35■■■■□ 3.09
SMARCD3-201ENST00000262188 FOXO4P98177 505 aa34.35■■■■□ 3.09
SMARCD3-201ENST00000262188 NLGN1Q8N2Q7 840 aa34.35■■■■□ 3.09
SMARCD3-201ENST00000262188 CCDC85AQ96PX6 553 aaPredicted RBP34.35■■■■□ 3.09
SMARCD3-201ENST00000262188 ABCC12Q96J65 1359 aa34.34■■■■□ 3.09
SMARCD3-201ENST00000262188 POLRMTO00411 1230 aaKnown RBP34.34■■■■□ 3.09
SMARCD3-201ENST00000262188 MMP10P09238 476 aa34.33■■■■□ 3.09
SMARCD3-201ENST00000262188 SERPINB2P05120 415 aa34.32■■■■□ 3.09
SMARCD3-201ENST00000262188 GTF2E1P29083 439 aaPredicted RBP34.32■■■■□ 3.08
SMARCD3-201ENST00000262188 CDHR2Q9BYE9 1310 aa34.32■■■■□ 3.08
SMARCD3-201ENST00000262188 LMBR1LQ6UX01 489 aa34.31■■■■□ 3.08
SMARCD3-201ENST00000262188 NPHP1O15259 732 aa34.31■■■■□ 3.08
SMARCD3-201ENST00000262188 ZBTB7AO95365 584 aa34.31■■■■□ 3.08
SMARCD3-201ENST00000262188 C3orf67Q6ZVT6 689 aa34.31■■■■□ 3.08
SMARCD3-201ENST00000262188 CHMP3Q9Y3E7 222 aa34.3■■■■□ 3.08
SMARCD3-201ENST00000262188 DDX60Q8IY21 1712 aaKnown RBP34.29■■■■□ 3.08
SMARCD3-201ENST00000262188 ATP8B2P98198 1209 aa34.29■■■■□ 3.08
SMARCD3-201ENST00000262188 PRR5LQ6MZQ0 368 aa34.29■■■■□ 3.08
SMARCD3-201ENST00000262188 TPTE2Q6XPS3 522 aa34.29■■■■□ 3.08
SMARCD3-201ENST00000262188 SRGAP3O43295 1099 aa34.29■■■■□ 3.08
SMARCD3-201ENST00000262188 RPAP2Q8IXW5 612 aaPredicted RBP34.29■■■■□ 3.08
SMARCD3-201ENST00000262188 NYXQ9GZU5 481 aa34.29■■■■□ 3.08
SMARCD3-201ENST00000262188 CNBD1Q8NA66 436 aa34.28■■■■□ 3.08
SMARCD3-201ENST00000262188 RABL6Q3YEC7 729 aaPredicted RBP34.26■■■■□ 3.08
SMARCD3-201ENST00000262188 PDE8AO60658 829 aa34.25■■■■□ 3.07
SMARCD3-201ENST00000262188 KLHDC4Q8TBB5 520 aa34.25■■■■□ 3.07
SMARCD3-201ENST00000262188 PLA2G12BQ9BX93 195 aa34.25■■■■□ 3.07
SMARCD3-201ENST00000262188 CASZ1Q86V15 1759 aa34.25■■■■□ 3.07
SMARCD3-201ENST00000262188 CTSWP56202 376 aa34.25■■■■□ 3.07
SMARCD3-201ENST00000262188 HDAC5Q9UQL6 1122 aa34.25■■■■□ 3.07
SMARCD3-201ENST00000262188 ATF5Q9Y2D1 282 aaPredicted RBP34.24■■■■□ 3.07
SMARCD3-201ENST00000262188 HDAC1Q13547 482 aaPredicted RBP34.23■■■■□ 3.07
SMARCD3-201ENST00000262188 FAM161AQ3B820 660 aa34.23■■■■□ 3.07
SMARCD3-201ENST00000262188 TTLL11Q8NHH1 800 aa34.23■■■■□ 3.07
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms