RNA–Protein interactions for RNA: ENST00000054666.10

VAMP3-201, Transcript of vesicle associated membrane protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VAMP3, Length 2,205 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP3-201ENST00000054666 NBPF15Q8N660 670 aa9.97□□□□□ -0.81
VAMP3-201ENST00000054666 INTS4Q96HW7 963 aaKnown RBP9.97□□□□□ -0.81
VAMP3-201ENST00000054666 ISY1Q9ULR0 285 aaKnown RBP9.97□□□□□ -0.81
VAMP3-201ENST00000054666 PTPN12Q05209 780 aaKnown RBP9.97□□□□□ -0.81
VAMP3-201ENST00000054666 CUL4AQ13619 759 aa9.97□□□□□ -0.81
VAMP3-201ENST00000054666 BTG4Q9NY30 223 aa9.97□□□□□ -0.81
VAMP3-201ENST00000054666 TLR7Q9NYK1 1049 aaKnown RBP9.97□□□□□ -0.81
VAMP3-201ENST00000054666 SNX14Q9Y5W7 946 aa9.97□□□□□ -0.81
VAMP3-201ENST00000054666 A1BGP04217 495 aa9.96□□□□□ -0.82
VAMP3-201ENST00000054666 KCNJ4P48050 445 aa9.96□□□□□ -0.82
VAMP3-201ENST00000054666 RFX5P48382 616 aaPredicted RBP9.96□□□□□ -0.82
VAMP3-201ENST00000054666 TNNI3KQ59H18 835 aa9.96□□□□□ -0.82
VAMP3-201ENST00000054666 TTLL7Q6ZT98 887 aa9.96□□□□□ -0.82
VAMP3-201ENST00000054666 CCDC191Q8NCU4 936 aa9.96□□□□□ -0.82
VAMP3-201ENST00000054666 JARID2Q92833 1246 aaPredicted RBP9.96□□□□□ -0.82
VAMP3-201ENST00000054666 TEX13AQ9BXU3 409 aaPredicted RBP9.96□□□□□ -0.82
VAMP3-201ENST00000054666 BOLA2Q9H3K6 86 aa9.96□□□□□ -0.82
VAMP3-201ENST00000054666 ZBTB3Q9H5J0 574 aa9.96□□□□□ -0.82
VAMP3-201ENST00000054666 FPGT-TNNI3KV9GXZ4 949 aa9.96□□□□□ -0.82
VAMP3-201ENST00000054666 CCDC171Q6TFL3 1326 aa9.96□□□□□ -0.82
VAMP3-201ENST00000054666 TJP1Q07157 1748 aa9.96□□□□□ -0.82
VAMP3-201ENST00000054666 PLCH1Q4KWH8 1693 aa9.95□□□□□ -0.82
VAMP3-201ENST00000054666 ZKSCAN1P17029 563 aaPredicted RBP9.95□□□□□ -0.82
VAMP3-201ENST00000054666 CASP7P55210 303 aa9.95□□□□□ -0.82
VAMP3-201ENST00000054666 MCTP1Q6DN14 999 aa9.95□□□□□ -0.82
VAMP3-201ENST00000054666 LMBR1LQ6UX01 489 aa9.95□□□□□ -0.82
VAMP3-201ENST00000054666 RFX7Q2KHR2 1363 aa9.95□□□□□ -0.82
VAMP3-201ENST00000054666 H7C1W4 665 aa9.95□□□□□ -0.82
VAMP3-201ENST00000054666 TFCP2Q12800 502 aa9.95□□□□□ -0.82
VAMP3-201ENST00000054666 KIF6Q6ZMV9 814 aa9.95□□□□□ -0.82
VAMP3-201ENST00000054666 ARXQ96QS3 562 aa9.95□□□□□ -0.82
VAMP3-201ENST00000054666 ZNF330Q9Y3S2 320 aaPredicted RBP9.95□□□□□ -0.82
VAMP3-201ENST00000054666 DDX49Q9Y6V7 483 aaKnown RBP9.95□□□□□ -0.82
VAMP3-201ENST00000054666 ROBO1Q9Y6N7 1651 aa9.95□□□□□ -0.82
VAMP3-201ENST00000054666 NMIQ13287 307 aaPredicted RBP9.94□□□□□ -0.82
VAMP3-201ENST00000054666 KLHL40Q2TBA0 621 aa9.94□□□□□ -0.82
VAMP3-201ENST00000054666 VSIG10Q8N0Z9 540 aa9.94□□□□□ -0.82
VAMP3-201ENST00000054666 DBNLQ9UJU6 430 aaKnown RBP9.94□□□□□ -0.82
VAMP3-201ENST00000054666 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.94□□□□□ -0.82
VAMP3-201ENST00000054666 AHDC1Q5TGY3 1603 aaPredicted RBP9.94□□□□□ -0.82
VAMP3-201ENST00000054666 FSD2A1L4K1 749 aa9.94□□□□□ -0.82
VAMP3-201ENST00000054666 LRP6O75581 1613 aa9.94□□□□□ -0.82
VAMP3-201ENST00000054666 STARD3NLO95772 234 aa9.94□□□□□ -0.82
VAMP3-201ENST00000054666 ATP5JP18859 108 aa9.94□□□□□ -0.82
VAMP3-201ENST00000054666 CASTP20810 708 aaKnown RBP9.94□□□□□ -0.82
VAMP3-201ENST00000054666 PKP1Q13835 747 aa9.94□□□□□ -0.82
VAMP3-201ENST00000054666 RNF20Q5VTR2 975 aa9.94□□□□□ -0.82
VAMP3-201ENST00000054666 PRPF40BQ6NWY9 871 aaKnown RBP9.94□□□□□ -0.82
VAMP3-201ENST00000054666 BRPF3Q9ULD4 1205 aa9.94□□□□□ -0.82
VAMP3-201ENST00000054666 COL22A1Q8NFW1 1626 aaPredicted RBP9.93□□□□□ -0.82
VAMP3-201ENST00000054666 DISP2A7MBM2 1401 aa9.93□□□□□ -0.82
VAMP3-201ENST00000054666 FAM227BQ96M60 508 aa9.93□□□□□ -0.82
VAMP3-201ENST00000054666 JAKMIP1Q96N16 626 aaKnown RBP9.93□□□□□ -0.82
VAMP3-201ENST00000054666 MED23Q9ULK4 1368 aa9.93□□□□□ -0.82
VAMP3-201ENST00000054666 IL15P40933 162 aaPredicted RBP9.92□□□□□ -0.82
VAMP3-201ENST00000054666 MRE11P49959 708 aa9.92□□□□□ -0.82
VAMP3-201ENST00000054666 FOXO4P98177 505 aa9.92□□□□□ -0.82
VAMP3-201ENST00000054666 PTH1RQ03431 593 aa9.92□□□□□ -0.82
VAMP3-201ENST00000054666 RASEFQ8IZ41 740 aa9.92□□□□□ -0.82
VAMP3-201ENST00000054666 TTC14Q96N46 770 aa9.92□□□□□ -0.82
VAMP3-201ENST00000054666 TM6SF1Q9BZW5 370 aa9.92□□□□□ -0.82
VAMP3-201ENST00000054666 LIMCH1Q9UPQ0 1083 aa9.92□□□□□ -0.82
VAMP3-201ENST00000054666 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.92□□□□□ -0.82
VAMP3-201ENST00000054666 RBM8AQ9Y5S9 174 aaKnown RBP9.92□□□□□ -0.82
VAMP3-201ENST00000054666 CYP46A1Q9Y6A2 500 aa9.92□□□□□ -0.82
VAMP3-201ENST00000054666 ITGB4P16144 1822 aa9.92□□□□□ -0.82
VAMP3-201ENST00000054666 PSMA5P28066 241 aa9.92□□□□□ -0.82
VAMP3-201ENST00000054666 AK2P54819 239 aa9.92□□□□□ -0.82
VAMP3-201ENST00000054666 PIGBQ92521 554 aa9.92□□□□□ -0.82
VAMP3-201ENST00000054666 DNAJC2Q99543 621 aaKnown RBP9.92□□□□□ -0.82
VAMP3-201ENST00000054666 DBNDD2Q9BQY9 259 aa9.92□□□□□ -0.82
VAMP3-201ENST00000054666 SNRKQ9NRH2 765 aa9.92□□□□□ -0.82
VAMP3-201ENST00000054666 WNK3Q9BYP7 1800 aa9.92□□□□□ -0.82
VAMP3-201ENST00000054666 WDR33Q9C0J8 1336 aaKnown RBP9.91□□□□□ -0.82
VAMP3-201ENST00000054666 COL16A1Q07092 1604 aaPredicted RBP9.91□□□□□ -0.82
VAMP3-201ENST00000054666 A0A0D9SFI3 127 aa9.91□□□□□ -0.82
VAMP3-201ENST00000054666 BRD1O95696 1058 aa9.91□□□□□ -0.82
VAMP3-201ENST00000054666 VPS53Q5VIR6 699 aa9.91□□□□□ -0.82
VAMP3-201ENST00000054666 CREB3L3Q68CJ9 461 aa9.91□□□□□ -0.82
VAMP3-201ENST00000054666 DNAJC10Q8IXB1 793 aa9.91□□□□□ -0.82
VAMP3-201ENST00000054666 GPR108Q9NPR9 543 aa9.91□□□□□ -0.82
VAMP3-201ENST00000054666 PDRG1Q9NUG6 133 aa9.91□□□□□ -0.82
VAMP3-201ENST00000054666 HMG20BQ9P0W2 317 aa9.91□□□□□ -0.82
VAMP3-201ENST00000054666 ASAP1Q9ULH1 1129 aa9.91□□□□□ -0.82
VAMP3-201ENST00000054666 TCIRG1Q13488 830 aa9.91□□□□□ -0.82
VAMP3-201ENST00000054666 NECTIN1Q15223 517 aa9.91□□□□□ -0.82
VAMP3-201ENST00000054666 MAP4K1Q92918 833 aa9.91□□□□□ -0.82
VAMP3-201ENST00000054666 KCNB2Q92953 911 aa9.91□□□□□ -0.82
VAMP3-201ENST00000054666 ZSCAN31Q96LW9 406 aaPredicted RBP9.91□□□□□ -0.82
VAMP3-201ENST00000054666 ISCA1Q9BUE6 129 aa9.91□□□□□ -0.82
VAMP3-201ENST00000054666 SH2B1Q9NRF2 756 aaPredicted RBP9.91□□□□□ -0.82
VAMP3-201ENST00000054666 ATG3Q9NT62 314 aa9.91□□□□□ -0.82
VAMP3-201ENST00000054666 ZDHHC9Q9Y397 364 aa9.91□□□□□ -0.82
VAMP3-201ENST00000054666 ZNF609O15014 1411 aa9.91□□□□□ -0.82
VAMP3-201ENST00000054666 EYA2O00167 538 aa9.9□□□□□ -0.82
VAMP3-201ENST00000054666 EXOC5O00471 708 aa9.9□□□□□ -0.82
VAMP3-201ENST00000054666 CIAO1O76071 339 aa9.9□□□□□ -0.82
VAMP3-201ENST00000054666 NCLP19338 710 aaKnown RBP9.9□□□□□ -0.82
VAMP3-201ENST00000054666 CCDC57Q2TAC2 916 aa9.9□□□□□ -0.82
VAMP3-201ENST00000054666 HSP90AB3PQ58FF7 597 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms