RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 RPL13AP40429 203 aaKnown RBP4.73□□□□□ -1.65
SCN1A-218ENST00000640036 MAGEA3P43357 314 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 TXNL4AP83876 142 aaKnown RBP4.73□□□□□ -1.65
SCN1A-218ENST00000640036 FBXO48Q5FWF7 155 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 NHSL2Q5HYW2 709 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 NCBP2-AS2Q69YL0 99 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 ADNP2Q6IQ32 1131 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 PGBD2Q6P3X8 592 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 MEX3BQ6ZN04 569 aaKnown RBP4.73□□□□□ -1.65
SCN1A-218ENST00000640036 CMC1Q7Z7K0 106 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 STOML3Q8TAV4 291 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 STT3BQ8TCJ2 826 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 FKBP10Q96AY3 582 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 AKR1E2Q96JD6 320 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 F2RL3Q96RI0 385 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 ERVMER34-1Q9H9K5 563 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 MYNNQ9NPC7 610 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 KCNN3Q9UGI6 736 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 LAMP5Q9UJQ1 280 aa4.73□□□□□ -1.65
SCN1A-218ENST00000640036 PRR19A6NJB7 356 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 LOC730098B7Z3J9 87 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 TPST2O60704 377 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 SLC16A8O95907 504 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 LGI1O95970 557 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 RAC2P15153 192 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 HIST1H1TP22492 207 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-218ENST00000640036 PRDX6P30041 224 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 OPRM1P35372 400 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 AHRP35869 848 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 JAM2P57087 298 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 TBC1D28Q2M2D7 210 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 IFI44LQ53G44 452 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 CRB2Q5IJ48 1285 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 TMEM108Q6UXF1 575 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 SSX8Q7RTT4 187 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 GDF7Q7Z4P5 450 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 SCD5Q86SK9 330 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 OR5M9Q8NGP3 310 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 ZNF382Q96SR6 550 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 FOLH1BQ9HBA9 442 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 NDRG4Q9ULP0 352 aaKnown RBP4.72□□□□□ -1.65
SCN1A-218ENST00000640036 CAPN6Q9Y6Q1 641 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 ACACBO00763 2458 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 ANKRD33BA6NCL7 494 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 NPIPB15A6NHN6 443 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-218ENST00000640036 PRRT4C9JH25 899 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 DNAJB5O75953 348 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 GBAP04062 536 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 CD48P09326 243 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 CHRNB1P11230 501 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 RFC3P40938 356 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 AFF1P51825 1210 aaKnown RBP4.72□□□□□ -1.65
SCN1A-218ENST00000640036 ZNF169Q14929 603 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-218ENST00000640036 ACSBG2Q5FVE4 666 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 NDUFAF5Q5TEU4 345 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 BTNL3Q6UXE8 466 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 LAS2Q8IYD9 372 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 CPSF7Q8N684 471 aaKnown RBP4.72□□□□□ -1.65
SCN1A-218ENST00000640036 BBS1Q8NFJ9 593 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 OR2T12Q8NG77 320 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 MAFIPQ8WZ33 124 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 ZNF566Q969W8 418 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 AGAP2Q99490 1192 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 PRELID3BQ9Y3B1 194 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 SPO11Q9Y5K1 396 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 ALG5Q9Y673 324 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 ROS1P08922 2347 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 TEX51A0A1B0GUA7 166 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 PATE3B3GLJ2 98 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 H7C1Q1 480 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 RNF225M0QZC1 329 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-218ENST00000640036 ARPC2O15144 300 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 FMO6PO60774 539 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 ELAVL4P26378 380 aaKnown RBP4.72□□□□□ -1.65
SCN1A-218ENST00000640036 GBX2P52951 348 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-218ENST00000640036 VWA5B1Q5TIE3 1220 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 SLITRK4Q8IW52 837 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 CDRT4Q8N9R6 151 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 BRIX1Q8TDN6 353 aaKnown RBP4.72□□□□□ -1.65
SCN1A-218ENST00000640036 RSC1A1Q92681 617 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 CRISPLD1Q9H336 500 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 REEP4Q9H6H4 257 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 TCF7L1Q9HCS4 588 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 UBQLN4Q9NRR5 601 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 ZNF358Q9NW07 568 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 PLEK2Q9NYT0 353 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 IL37Q9NZH6 218 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 LINC01387J3KSC0 135 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 ATXN1LP0C7T5 689 aaKnown RBP4.72□□□□□ -1.65
SCN1A-218ENST00000640036 AKR1D1P51857 326 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 PRDX1Q06830 199 aaKnown RBP4.72□□□□□ -1.65
SCN1A-218ENST00000640036 WIPI1Q5MNZ9 446 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-218ENST00000640036 DHDDSQ86SQ9 333 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 ZBTB8BQ8NAP8 495 aaPredicted RBP4.72□□□□□ -1.65
SCN1A-218ENST00000640036 OR4F15Q8NGB8 312 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 OR2L8Q8NGY9 312 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 TNFRSF25Q93038 417 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 SLC46A1Q96NT5 459 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 ZNF347Q96SE7 839 aa4.72□□□□□ -1.65
SCN1A-218ENST00000640036 BARX1Q9HBU1 254 aaPredicted RBP4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms