RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 SKA2Q8WVK7 121 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-216ENST00000637968 RTP4Q96DX8 246 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 KLRG1Q96E93 195 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 WFIKKN1Q96NZ8 548 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 SMAD5Q99717 465 aaKnown RBP5.42□□□□□ -1.54
SCN1A-216ENST00000637968 AIF1LQ9BQI0 150 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 DUSP16Q9BY84 665 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 TMPRSS13Q9BYE2 586 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 NIF3L1Q9GZT8 377 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 HRH4Q9H3N8 390 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 FN3KRPQ9HA64 309 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 HMX1Q9NP08 348 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-216ENST00000637968 TUBG2Q9NRH3 451 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 HECAQ9UBI9 543 aaPredicted RBP5.42□□□□□ -1.54
SCN1A-216ENST00000637968 DKKL1Q9UK85 242 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 FZD4Q9ULV1 537 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 ECM29Q5VYK3 1845 aa5.42□□□□□ -1.54
SCN1A-216ENST00000637968 LOC100509620A0A075B734 347 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 GPR89AB7ZAQ6 455 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 BHLHE40O14503 412 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 CXCL11O14625 94 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 JCHAINP01591 159 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 GPR89BP0CG08 455 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 SLC35E2BP0CK96 405 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 UROSP10746 265 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 RNH1P13489 461 aaKnown RBP5.41□□□□□ -1.54
SCN1A-216ENST00000637968 TYMPP19971 482 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 NFYBP25208 207 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 CD82P27701 267 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 DLSTP36957 453 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 LHX1P48742 406 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 SELENOPP49908 381 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 FKBP1BP68106 108 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 RPL19P84098 196 aaKnown RBP5.41□□□□□ -1.54
SCN1A-216ENST00000637968 PTSQ03393 145 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 ABHD18Q0P651 414 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 DPYSL2Q16555 572 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 SLC39A12Q504Y0 691 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 ZNF628Q5EBL2 1059 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 TSTD2Q5T7W7 516 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 ZDHHC20Q5W0Z9 365 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 DLEU7Q6UYE1 221 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 WDR88Q6ZMY6 472 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 ZFAND4Q86XD8 727 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 BPIFB2Q8N4F0 458 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 ZNF610Q8N9Z0 462 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 OR1S2Q8NGQ3 325 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 IL31RAQ8NI17 732 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 CLEC4DQ8WXI8 215 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 TFAP2BQ92481 460 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 PITX2Q99697 317 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 INPP5KQ9BT40 448 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 ACPTQ9BZG2 426 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 DNAJC27Q9NZQ0 273 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 A6NLC8 198 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 ZNF705FA8MVS1 300 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-216ENST00000637968 GTPBP1O00178 669 aaKnown RBP5.41□□□□□ -1.54
SCN1A-216ENST00000637968 YY2O15391 372 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 F7P08709 466 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-216ENST00000637968 ZNF705DP0CH99 300 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-216ENST00000637968 ZNF705BP0CI00 300 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-216ENST00000637968 EPCAMP16422 314 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 TLX1P31314 330 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-216ENST00000637968 RPL4P36578 427 aaKnown RBP5.41□□□□□ -1.54
SCN1A-216ENST00000637968 HEPACAMQ14CZ8 416 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 PLA1AQ53H76 456 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 OR4C5Q8NGB2 326 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 GNPDA2Q8TDQ7 276 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 NT5C3BQ969T7 300 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 HIST1H2BAQ96A08 127 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 NUDT11Q96G61 164 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 GPR78Q96P69 363 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 ZIC5Q96T25 663 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 MICU1Q9BPX6 476 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 TMEM208Q9BTX3 173 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 TSSK6Q9BXA6 273 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 ATG5Q9H1Y0 275 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 NOX3Q9HBY0 568 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 RASL12Q9NYN1 266 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 NWD2Q9ULI1 1742 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 A0A1B0GUH1 482 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 SMIM22K7EJ46 135 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 ZNF593O00488 134 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-216ENST00000637968 SCN2BO60939 215 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 SEMA7AO75326 666 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 ARSAP15289 507 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 MUC1P15941 1255 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-216ENST00000637968 KLRK1P26718 216 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 RPL3P39023 403 aaKnown RBP5.41□□□□□ -1.54
SCN1A-216ENST00000637968 OR3A1P47881 315 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 RPL29P47914 159 aaKnown RBP5.41□□□□□ -1.54
SCN1A-216ENST00000637968 GIPRP48546 466 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 ACTA2P62736 377 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 RAB1AP62820 205 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 ACTG2P63267 376 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 ACTC1P68032 377 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 ACTA1P68133 377 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 SURF1Q15526 300 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 TMEM95Q3KNT9 176 aa5.41□□□□□ -1.54
SCN1A-216ENST00000637968 SV2CQ496J9 727 aa5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms