RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 HOXB13Q92826 284 aaPredicted RBP16.61■□□□□ 0.25
CLN3-241ENST00000635861 PGM2Q96G03 612 aa16.61■□□□□ 0.25
CLN3-241ENST00000635861 TBL1XR1Q9BZK7 514 aa16.61■□□□□ 0.25
CLN3-241ENST00000635861 PAQR5Q9NXK6 330 aaPredicted RBP16.61■□□□□ 0.25
CLN3-241ENST00000635861 MED11Q9P086 117 aa16.61■□□□□ 0.25
CLN3-241ENST00000635861 ABCA2Q9BZC7 2435 aa16.6■□□□□ 0.25
CLN3-241ENST00000635861 SLC28A1O00337 649 aa16.6■□□□□ 0.25
CLN3-241ENST00000635861 NGFRP08138 427 aa16.6■□□□□ 0.25
CLN3-241ENST00000635861 PRPS2P11908 318 aa16.6■□□□□ 0.25
CLN3-241ENST00000635861 ZNF17P17021 662 aa16.6■□□□□ 0.25
CLN3-241ENST00000635861 HOXB4P17483 251 aaPredicted RBP16.6■□□□□ 0.25
CLN3-241ENST00000635861 CRYGSP22914 178 aa16.6■□□□□ 0.25
CLN3-241ENST00000635861 CRHR1P34998 444 aa16.6■□□□□ 0.25
CLN3-241ENST00000635861 KIR2DL2P43627 348 aaPredicted RBP16.6■□□□□ 0.25
CLN3-241ENST00000635861 CLDN15P56746 228 aa16.6■□□□□ 0.25
CLN3-241ENST00000635861 KIAA0040Q15053 153 aa16.6■□□□□ 0.25
CLN3-241ENST00000635861 POU4F3Q15319 338 aa16.6■□□□□ 0.25
CLN3-241ENST00000635861 VWA1Q6PCB0 445 aa16.6■□□□□ 0.25
CLN3-241ENST00000635861 SH2D5Q6ZV89 423 aa16.6■□□□□ 0.25
CLN3-241ENST00000635861 CEP70Q8NHQ1 597 aa16.6■□□□□ 0.25
CLN3-241ENST00000635861 DUSP19Q8WTR2 217 aa16.6■□□□□ 0.25
CLN3-241ENST00000635861 PIGTQ969N2 578 aa16.6■□□□□ 0.25
CLN3-241ENST00000635861 ZNF845Q96IR2 970 aaPredicted RBP16.6■□□□□ 0.25
CLN3-241ENST00000635861 C18orf12Q96KH6 178 aa16.6■□□□□ 0.25
CLN3-241ENST00000635861 FAM111AQ96PZ2 611 aa16.6■□□□□ 0.25
CLN3-241ENST00000635861 PINK1Q9BXM7 581 aa16.6■□□□□ 0.25
CLN3-241ENST00000635861 OXSMQ9NWU1 459 aa16.6■□□□□ 0.25
CLN3-241ENST00000635861 MID2Q9UJV3 735 aa16.6■□□□□ 0.25
CLN3-241ENST00000635861 CCL27Q9Y4X3 112 aa16.6■□□□□ 0.25
CLN3-241ENST00000635861 A0A1W2PPR1 153 aa16.59■□□□□ 0.25
CLN3-241ENST00000635861 PDPK1O15530 556 aa16.59■□□□□ 0.25
CLN3-241ENST00000635861 ARHGEF9O43307 516 aa16.59■□□□□ 0.25
CLN3-241ENST00000635861 RGS14O43566 566 aa16.59■□□□□ 0.25
CLN3-241ENST00000635861 PLIN3O60664 434 aa16.59■□□□□ 0.25
CLN3-241ENST00000635861 SEC22BO75396 215 aa16.59■□□□□ 0.25
CLN3-241ENST00000635861 ANGPTL1O95841 491 aa16.59■□□□□ 0.25
CLN3-241ENST00000635861 NEFHP12036 1026 aa16.59■□□□□ 0.25
CLN3-241ENST00000635861 POU2F1P14859 743 aa16.59■□□□□ 0.25
CLN3-241ENST00000635861 TCEA1P23193 301 aaKnown RBP16.59■□□□□ 0.25
CLN3-241ENST00000635861 LCN1P31025 176 aa16.59■□□□□ 0.25
CLN3-241ENST00000635861 UGT2B10P36537 528 aa16.59■□□□□ 0.25
CLN3-241ENST00000635861 MAP3K8P41279 467 aa16.59■□□□□ 0.25
CLN3-241ENST00000635861 SUCLG1P53597 346 aaKnown RBP16.59■□□□□ 0.25
CLN3-241ENST00000635861 FAM27E3Q08E93 113 aa16.59■□□□□ 0.25
CLN3-241ENST00000635861 STX5Q13190 355 aa16.59■□□□□ 0.25
CLN3-241ENST00000635861 GUSBP1Q15486 140 aa16.59■□□□□ 0.25
CLN3-241ENST00000635861 BTLAQ7Z6A9 289 aa16.59■□□□□ 0.25
CLN3-241ENST00000635861 TDRPQ86YL5 185 aa16.59■□□□□ 0.25
CLN3-241ENST00000635861 CDRT4Q8N9R6 151 aa16.59■□□□□ 0.25
CLN3-241ENST00000635861 WFDC11Q8NEX6 87 aa16.59■□□□□ 0.25
CLN3-241ENST00000635861 FIG4Q92562 907 aa16.59■□□□□ 0.25
CLN3-241ENST00000635861 FCRL1Q96LA6 429 aa16.59■□□□□ 0.25
CLN3-241ENST00000635861 CCT7Q99832 543 aa16.59■□□□□ 0.25
CLN3-241ENST00000635861 MED18Q9BUE0 208 aa16.59■□□□□ 0.25
CLN3-241ENST00000635861 C1orf109Q9NX04 203 aa16.59■□□□□ 0.25
CLN3-241ENST00000635861 ZKSCAN7Q9P0L1 754 aaPredicted RBP16.59■□□□□ 0.25
CLN3-241ENST00000635861 NTMQ9P121 344 aa16.59■□□□□ 0.25
CLN3-241ENST00000635861 NUP214P35658 2090 aaPredicted RBP16.58■□□□□ 0.24
CLN3-241ENST00000635861 A0A087WZY1 265 aa16.58■□□□□ 0.24
CLN3-241ENST00000635861 A0A1W2PPM1 405 aa16.58■□□□□ 0.24
CLN3-241ENST00000635861 C17orf51A8MQB3 221 aa16.58■□□□□ 0.24
CLN3-241ENST00000635861 FAM171A2A8MVW0 826 aa16.58■□□□□ 0.24
CLN3-241ENST00000635861 ALG1L2C9J202 215 aa16.58■□□□□ 0.24
CLN3-241ENST00000635861 H3BML4 177 aa16.58■□□□□ 0.24
CLN3-241ENST00000635861 C16orf97H3BN30 126 aa16.58■□□□□ 0.24
CLN3-241ENST00000635861 SEC14L5O43304 696 aa16.58■□□□□ 0.24
CLN3-241ENST00000635861 NKX2-2O95096 273 aa16.58■□□□□ 0.24
CLN3-241ENST00000635861 UTS2O95399 124 aa16.58■□□□□ 0.24
CLN3-241ENST00000635861 CGAP01215 116 aa16.58■□□□□ 0.24
CLN3-241ENST00000635861 DDX5P17844 614 aaKnown RBP16.58■□□□□ 0.24
CLN3-241ENST00000635861 FPR1P21462 350 aa16.58■□□□□ 0.24
CLN3-241ENST00000635861 GABRA3P34903 492 aa16.58■□□□□ 0.24
CLN3-241ENST00000635861 NKX6-1P78426 367 aaPredicted RBP16.58■□□□□ 0.24
CLN3-241ENST00000635861 PON3Q15166 354 aa16.58■□□□□ 0.24
CLN3-241ENST00000635861 TMEM44Q2T9K0 475 aa16.58■□□□□ 0.24
CLN3-241ENST00000635861 LIPMQ5VYY2 423 aa16.58■□□□□ 0.24
CLN3-241ENST00000635861 ZNF474Q6S9Z5 364 aaPredicted RBP16.58■□□□□ 0.24
CLN3-241ENST00000635861 MARCH3Q86UD3 253 aa16.58■□□□□ 0.24
CLN3-241ENST00000635861 CXorf67Q86X51 503 aaPredicted RBP16.58■□□□□ 0.24
CLN3-241ENST00000635861 MREGQ8N565 214 aa16.58■□□□□ 0.24
CLN3-241ENST00000635861 ZBED6CLQ96FA7 236 aaPredicted RBP16.58■□□□□ 0.24
CLN3-241ENST00000635861 WFIKKN1Q96NZ8 548 aa16.58■□□□□ 0.24
CLN3-241ENST00000635861 TRMOQ9BU70 441 aa16.58■□□□□ 0.24
CLN3-241ENST00000635861 RTN4RQ9BZR6 473 aa16.58■□□□□ 0.24
CLN3-241ENST00000635861 FLRT3Q9NZU0 649 aa16.58■□□□□ 0.24
CLN3-241ENST00000635861 PROCRQ9UNN8 238 aa16.58■□□□□ 0.24
CLN3-241ENST00000635861 TMED5Q9Y3A6 229 aa16.58■□□□□ 0.24
CLN3-241ENST00000635861 HSPA4LO95757 839 aa16.57■□□□□ 0.24
CLN3-241ENST00000635861 CPA3P15088 417 aa16.57■□□□□ 0.24
CLN3-241ENST00000635861 GPC1P35052 558 aa16.57■□□□□ 0.24
CLN3-241ENST00000635861 FRKP42685 505 aaPredicted RBP16.57■□□□□ 0.24
CLN3-241ENST00000635861 BEND6Q5SZJ8 279 aaPredicted RBP16.57■□□□□ 0.24
CLN3-241ENST00000635861 ZCCHC12Q6PEW1 402 aa16.57■□□□□ 0.24
CLN3-241ENST00000635861 FAM214BQ7L5A3 538 aa16.57■□□□□ 0.24
CLN3-241ENST00000635861 OR6Y1Q8NGX8 325 aa16.57■□□□□ 0.24
CLN3-241ENST00000635861 FNDC9Q8TBE3 224 aa16.57■□□□□ 0.24
CLN3-241ENST00000635861 GPR151Q8TDV0 419 aa16.57■□□□□ 0.24
CLN3-241ENST00000635861 MTERF3Q96E29 417 aa16.57■□□□□ 0.24
CLN3-241ENST00000635861 EGLN2Q96KS0 407 aa16.57■□□□□ 0.24
CLN3-241ENST00000635861 OPN3Q9H1Y3 402 aaPredicted RBP16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 82.4 ms