RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 RAD21L1Q9H4I0 556 aa16.53■□□□□ 0.24
CLN3-239ENST00000628023 PPP4R1LQ9P1A2 415 aa16.53■□□□□ 0.24
CLN3-239ENST00000628023 NIPSNAP3AQ9UFN0 247 aaPredicted RBP16.53■□□□□ 0.24
CLN3-239ENST00000628023 PCDHB14Q9Y5E9 798 aa16.53■□□□□ 0.24
CLN3-239ENST00000628023 MYO9AB2RTY4 2548 aa16.53■□□□□ 0.24
CLN3-239ENST00000628023 NINQ8N4C6 2090 aa16.52■□□□□ 0.24
CLN3-239ENST00000628023 NBPF19A0A087WUL8 3843 aa16.52■□□□□ 0.24
CLN3-239ENST00000628023 LRRC3CA6NJW4 275 aa16.52■□□□□ 0.24
CLN3-239ENST00000628023 SCDO00767 359 aa16.52■□□□□ 0.24
CLN3-239ENST00000628023 SNPHO15079 494 aa16.52■□□□□ 0.24
CLN3-239ENST00000628023 SNX3O60493 162 aa16.52■□□□□ 0.24
CLN3-239ENST00000628023 UNC5CO95185 931 aa16.52■□□□□ 0.24
CLN3-239ENST00000628023 CD1EP15812 388 aa16.52■□□□□ 0.24
CLN3-239ENST00000628023 ELAVL4P26378 380 aaKnown RBP16.52■□□□□ 0.24
CLN3-239ENST00000628023 GDF1P27539 372 aa16.52■□□□□ 0.24
CLN3-239ENST00000628023 LCN1P31025 176 aa16.52■□□□□ 0.24
CLN3-239ENST00000628023 PTGDSP41222 190 aa16.52■□□□□ 0.24
CLN3-239ENST00000628023 CRATP43155 626 aa16.52■□□□□ 0.24
CLN3-239ENST00000628023 MAGEA5P43359 124 aa16.52■□□□□ 0.24
CLN3-239ENST00000628023 TDGF1P3P51864 188 aa16.52■□□□□ 0.24
CLN3-239ENST00000628023 RBPJQ06330 500 aa16.52■□□□□ 0.24
CLN3-239ENST00000628023 TOMM20Q15388 145 aa16.52■□□□□ 0.24
CLN3-239ENST00000628023 FLYWCH1Q4VC44 716 aa16.52■□□□□ 0.24
CLN3-239ENST00000628023 KRTCAP3Q53RY4 240 aa16.52■□□□□ 0.24
CLN3-239ENST00000628023 DDX59Q5T1V6 619 aaKnown RBP eCLIP16.52■□□□□ 0.24
CLN3-239ENST00000628023 SIAH3Q8IW03 269 aa16.52■□□□□ 0.24
CLN3-239ENST00000628023 FAM110BQ8TC76 370 aa16.52■□□□□ 0.24
CLN3-239ENST00000628023 TSPEARQ8WU66 669 aa16.52■□□□□ 0.24
CLN3-239ENST00000628023 PHF12Q96QT6 1004 aa16.52■□□□□ 0.24
CLN3-239ENST00000628023 DEFB127Q9H1M4 99 aa16.52■□□□□ 0.24
CLN3-239ENST00000628023 ZNF703Q9H7S9 590 aaPredicted RBP16.52■□□□□ 0.24
CLN3-239ENST00000628023 SLC52A3Q9NQ40 469 aa16.52■□□□□ 0.24
CLN3-239ENST00000628023 SDHAF3Q9NRP4 125 aa16.52■□□□□ 0.24
CLN3-239ENST00000628023 FBXO34Q9NWN3 711 aa16.52■□□□□ 0.24
CLN3-239ENST00000628023 FAM53CQ9NYF3 392 aa16.52■□□□□ 0.24
CLN3-239ENST00000628023 ARMCX1Q9P291 453 aa16.52■□□□□ 0.24
CLN3-239ENST00000628023 CLIC1O00299 241 aa16.51■□□□□ 0.23
CLN3-239ENST00000628023 TRAPPC6AO75865 159 aa16.51■□□□□ 0.23
CLN3-239ENST00000628023 C1QCP02747 245 aa16.51■□□□□ 0.23
CLN3-239ENST00000628023 STSP08842 583 aa16.51■□□□□ 0.23
CLN3-239ENST00000628023 PTPN6P29350 595 aa16.51■□□□□ 0.23
CLN3-239ENST00000628023 ADSLP30566 484 aaPredicted RBP16.51■□□□□ 0.23
CLN3-239ENST00000628023 NFYCQ13952 458 aa16.51■□□□□ 0.23
CLN3-239ENST00000628023 MMEL1Q495T6 779 aa16.51■□□□□ 0.23
CLN3-239ENST00000628023 GPAT3Q53EU6 434 aa16.51■□□□□ 0.23
CLN3-239ENST00000628023 COX20Q5RI15 118 aa16.51■□□□□ 0.23
CLN3-239ENST00000628023 LRIF1Q5T3J3 769 aa16.51■□□□□ 0.23
CLN3-239ENST00000628023 TIGD3Q6B0B8 471 aa16.51■□□□□ 0.23
CLN3-239ENST00000628023 BNC2Q6ZN30 1099 aaPredicted RBP16.51■□□□□ 0.23
CLN3-239ENST00000628023 ZAR1Q86SH2 424 aa16.51■□□□□ 0.23
CLN3-239ENST00000628023 DHDDSQ86SQ9 333 aa16.51■□□□□ 0.23
CLN3-239ENST00000628023 GHDCQ8N2G8 530 aa16.51■□□□□ 0.23
CLN3-239ENST00000628023 ZNF614Q8N883 585 aa16.51■□□□□ 0.23
CLN3-239ENST00000628023 ZNF527Q8NB42 609 aa16.51■□□□□ 0.23
CLN3-239ENST00000628023 CHDHQ8NE62 594 aaPredicted RBP16.51■□□□□ 0.23
CLN3-239ENST00000628023 OR52N2Q8NGI0 321 aa16.51■□□□□ 0.23
CLN3-239ENST00000628023 DTNBP1Q96EV8 351 aa16.51■□□□□ 0.23
CLN3-239ENST00000628023 GNRHR2Q96P88 292 aa16.51■□□□□ 0.23
CLN3-239ENST00000628023 SDF2Q99470 211 aa16.51■□□□□ 0.23
CLN3-239ENST00000628023 LDAHQ9H6V9 325 aa16.51■□□□□ 0.23
CLN3-239ENST00000628023 EXO5Q9H790 373 aa16.51■□□□□ 0.23
CLN3-239ENST00000628023 UBQLN4Q9NRR5 601 aa16.51■□□□□ 0.23
CLN3-239ENST00000628023 C15orf41Q9Y2V0 281 aa16.51■□□□□ 0.23
CLN3-239ENST00000628023 NPIPA5A0A0B4J1W7 369 aa16.5■□□□□ 0.23
CLN3-239ENST00000628023 TMEM247A6NEH6 219 aa16.5■□□□□ 0.23
CLN3-239ENST00000628023 ENO4A6NNW6 628 aa16.5■□□□□ 0.23
CLN3-239ENST00000628023 NPIPA7E9PJI5 369 aa16.5■□□□□ 0.23
CLN3-239ENST00000628023 HMGN4O00479 90 aa16.5■□□□□ 0.23
CLN3-239ENST00000628023 SLC22A2O15244 555 aa16.5■□□□□ 0.23
CLN3-239ENST00000628023 FADS1O60427 444 aa16.5■□□□□ 0.23
CLN3-239ENST00000628023 STX11O75558 287 aa16.5■□□□□ 0.23
CLN3-239ENST00000628023 OXSR1O95747 527 aaPredicted RBP16.5■□□□□ 0.23
CLN3-239ENST00000628023 RFPL3SP0C7P2 107 aa16.5■□□□□ 0.23
CLN3-239ENST00000628023 NPIPA8P0DM63 369 aa16.5■□□□□ 0.23
CLN3-239ENST00000628023 TBXA2RP21731 343 aa16.5■□□□□ 0.23
CLN3-239ENST00000628023 PPIBP23284 216 aaKnown RBP16.5■□□□□ 0.23
CLN3-239ENST00000628023 MAGEA8P43361 318 aa16.5■□□□□ 0.23
CLN3-239ENST00000628023 SLC10A1Q14973 349 aa16.5■□□□□ 0.23
CLN3-239ENST00000628023 GPR68Q15743 365 aa16.5■□□□□ 0.23
CLN3-239ENST00000628023 HYAL4Q2M3T9 481 aa16.5■□□□□ 0.23
CLN3-239ENST00000628023 ARHGAP11BQ3KRB8 267 aa16.5■□□□□ 0.23
CLN3-239ENST00000628023 CMPK2Q5EBM0 449 aa16.5■□□□□ 0.23
CLN3-239ENST00000628023 OR5M10Q6IEU7 315 aa16.5■□□□□ 0.23
CLN3-239ENST00000628023 MARCH3Q86UD3 253 aa16.5■□□□□ 0.23
CLN3-239ENST00000628023 MTDHQ86UE4 582 aaKnown RBP16.5■□□□□ 0.23
CLN3-239ENST00000628023 SNX32Q86XE0 403 aa16.5■□□□□ 0.23
CLN3-239ENST00000628023 OR4K17Q8NGC6 315 aa16.5■□□□□ 0.23
CLN3-239ENST00000628023 OR4C3Q8NH37 302 aa16.5■□□□□ 0.23
CLN3-239ENST00000628023 RNF138Q8WVD3 245 aa16.5■□□□□ 0.23
CLN3-239ENST00000628023 ROPN1LQ96C74 230 aa16.5■□□□□ 0.23
CLN3-239ENST00000628023 HOXD1Q9GZZ0 328 aa16.5■□□□□ 0.23
CLN3-239ENST00000628023 ZDHHC11Q9H8X9 412 aa16.5■□□□□ 0.23
CLN3-239ENST00000628023 SLC25A37Q9NYZ2 338 aa16.5■□□□□ 0.23
CLN3-239ENST00000628023 SLAMF8Q9P0V8 285 aa16.5■□□□□ 0.23
CLN3-239ENST00000628023 P2RX2Q9UBL9 471 aa16.5■□□□□ 0.23
CLN3-239ENST00000628023 CRYBG3Q68DQ2 2970 aa16.5■□□□□ 0.23
CLN3-239ENST00000628023 CELSR2Q9HCU4 2923 aa16.49■□□□□ 0.23
CLN3-239ENST00000628023 BBIP1A8MTZ0 92 aa16.49■□□□□ 0.23
CLN3-239ENST00000628023 EVPLLA8MZ36 301 aa16.49■□□□□ 0.23
CLN3-239ENST00000628023 ALG1L2C9J202 215 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms