RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 ADAM10O14672 748 aa11.6□□□□□ -0.55
PNKP-217ENST00000625216 ARPC2O15144 300 aa11.6□□□□□ -0.55
PNKP-217ENST00000625216 BCAS2O75934 225 aaPredicted RBP11.6□□□□□ -0.55
PNKP-217ENST00000625216 IGHG3P01860 377 aa11.6□□□□□ -0.55
PNKP-217ENST00000625216 FBXO45P0C2W1 286 aa11.6□□□□□ -0.55
PNKP-217ENST00000625216 CCL3P10147 92 aa11.6□□□□□ -0.55
PNKP-217ENST00000625216 PPIBP23284 216 aaKnown RBP11.6□□□□□ -0.55
PNKP-217ENST00000625216 GPC1P35052 558 aa11.6□□□□□ -0.55
PNKP-217ENST00000625216 MC3RP41968 323 aa11.6□□□□□ -0.55
PNKP-217ENST00000625216 CASP9P55211 416 aa11.6□□□□□ -0.55
PNKP-217ENST00000625216 ACTR3P61158 418 aa11.6□□□□□ -0.55
PNKP-217ENST00000625216 FOXO1Q12778 655 aa11.6□□□□□ -0.55
PNKP-217ENST00000625216 MAP4K2Q12851 820 aa11.6□□□□□ -0.55
PNKP-217ENST00000625216 BNIP2Q12982 314 aa11.6□□□□□ -0.55
PNKP-217ENST00000625216 FLOT2Q14254 428 aa11.6□□□□□ -0.55
PNKP-217ENST00000625216 TRIM25Q14258 630 aaKnown RBP11.6□□□□□ -0.55
PNKP-217ENST00000625216 SLC10A1Q14973 349 aa11.6□□□□□ -0.55
PNKP-217ENST00000625216 RGNQ15493 299 aa11.6□□□□□ -0.55
PNKP-217ENST00000625216 TBCELQ5QJ74 424 aa11.6□□□□□ -0.55
PNKP-217ENST00000625216 DDX59Q5T1V6 619 aaKnown RBP eCLIP11.6□□□□□ -0.55
PNKP-217ENST00000625216 HLA-DQA1Q5Y7H0 255 aa11.6□□□□□ -0.55
PNKP-217ENST00000625216 TMEM107Q6UX40 140 aa11.6□□□□□ -0.55
PNKP-217ENST00000625216 LYPD8Q6UX82 237 aa11.6□□□□□ -0.55
PNKP-217ENST00000625216 PTOV1Q86YD1 416 aa11.6□□□□□ -0.55
PNKP-217ENST00000625216 ZZZ3Q8IYH5 903 aa11.6□□□□□ -0.55
PNKP-217ENST00000625216 MICU2Q8IYU8 434 aa11.6□□□□□ -0.55
PNKP-217ENST00000625216 SAMD14Q8IZD0 417 aaPredicted RBP11.6□□□□□ -0.55
PNKP-217ENST00000625216 FAM109AQ8N4B1 249 aa11.6□□□□□ -0.55
PNKP-217ENST00000625216 TRIML2Q8N7C3 387 aa11.6□□□□□ -0.55
PNKP-217ENST00000625216 ZNF615Q8N8J6 731 aa11.6□□□□□ -0.55
PNKP-217ENST00000625216 ZNF441Q8N8Z8 693 aa11.6□□□□□ -0.55
PNKP-217ENST00000625216 C17orf47Q8NEP4 570 aa11.6□□□□□ -0.55
PNKP-217ENST00000625216 ADCY4Q8NFM4 1077 aa11.6□□□□□ -0.55
PNKP-217ENST00000625216 OR2T12Q8NG77 320 aa11.6□□□□□ -0.55
PNKP-217ENST00000625216 SFXN5Q8TD22 340 aa11.6□□□□□ -0.55
PNKP-217ENST00000625216 DOK4Q8TEW6 326 aa11.6□□□□□ -0.55
PNKP-217ENST00000625216 KAT2AQ92830 837 aa11.6□□□□□ -0.55
PNKP-217ENST00000625216 NEURL3Q96EH8 262 aa11.6□□□□□ -0.55
PNKP-217ENST00000625216 GAL3ST4Q96RP7 486 aa11.6□□□□□ -0.55
PNKP-217ENST00000625216 DMRTA2Q96SC8 542 aa11.6□□□□□ -0.55
PNKP-217ENST00000625216 SECISBP2Q96T21 854 aaKnown RBP11.6□□□□□ -0.55
PNKP-217ENST00000625216 ECSITQ9BQ95 431 aa11.6□□□□□ -0.55
PNKP-217ENST00000625216 DEFB127Q9H1M4 99 aa11.6□□□□□ -0.55
PNKP-217ENST00000625216 TP63Q9H3D4 680 aaPredicted RBP11.6□□□□□ -0.55
PNKP-217ENST00000625216 SERHL2Q9H4I8 314 aa11.6□□□□□ -0.55
PNKP-217ENST00000625216 ANKRA2Q9H9E1 313 aa11.6□□□□□ -0.55
PNKP-217ENST00000625216 AP3M1Q9Y2T2 418 aa11.6□□□□□ -0.55
PNKP-217ENST00000625216 CELSR2Q9HCU4 2923 aa11.59□□□□□ -0.55
PNKP-217ENST00000625216 A0A1B0GVC2 190 aa11.59□□□□□ -0.55
PNKP-217ENST00000625216 TP53I11O14683 189 aa11.59□□□□□ -0.55
PNKP-217ENST00000625216 BCKDKO14874 412 aa11.59□□□□□ -0.55
PNKP-217ENST00000625216 SUSD5O60279 629 aa11.59□□□□□ -0.55
PNKP-217ENST00000625216 MGRN1O60291 552 aa11.59□□□□□ -0.55
PNKP-217ENST00000625216 ENTPD5O75356 428 aa11.59□□□□□ -0.55
PNKP-217ENST00000625216 PDE9AO76083 593 aa11.59□□□□□ -0.55
PNKP-217ENST00000625216 CLDN14O95500 239 aa11.59□□□□□ -0.55
PNKP-217ENST00000625216 CLPSP04118 112 aa11.59□□□□□ -0.55
PNKP-217ENST00000625216 ATP1B1P05026 303 aa11.59□□□□□ -0.55
PNKP-217ENST00000625216 TPOP07202 933 aa11.59□□□□□ -0.55
PNKP-217ENST00000625216 NUDT7P0C024 238 aa11.59□□□□□ -0.55
PNKP-217ENST00000625216 CT62P0C5K7 136 aa11.59□□□□□ -0.55
PNKP-217ENST00000625216 ETFAP13804 333 aa11.59□□□□□ -0.55
PNKP-217ENST00000625216 NCK1P16333 377 aa11.59□□□□□ -0.55
PNKP-217ENST00000625216 NT5EP21589 574 aa11.59□□□□□ -0.55
PNKP-217ENST00000625216 SSTR4P31391 388 aa11.59□□□□□ -0.55
PNKP-217ENST00000625216 MPIP34949 423 aa11.59□□□□□ -0.55
PNKP-217ENST00000625216 CHI3L1P36222 383 aaPredicted RBP11.59□□□□□ -0.55
PNKP-217ENST00000625216 CCT3P49368 545 aaKnown RBP11.59□□□□□ -0.55
PNKP-217ENST00000625216 TMED10P49755 219 aaKnown RBP11.59□□□□□ -0.55
PNKP-217ENST00000625216 NRG3P56975 720 aa11.59□□□□□ -0.55
PNKP-217ENST00000625216 RPS26P62854 115 aaKnown RBP11.59□□□□□ -0.55
PNKP-217ENST00000625216 MRPS35P82673 323 aaKnown RBP11.59□□□□□ -0.55
PNKP-217ENST00000625216 TRAP1Q12931 704 aaKnown RBP11.59□□□□□ -0.55
PNKP-217ENST00000625216 NTRK2Q16620 822 aa11.59□□□□□ -0.55
PNKP-217ENST00000625216 SPDYE7PQ495Y7 208 aa11.59□□□□□ -0.55
PNKP-217ENST00000625216 ZNF628Q5EBL2 1059 aa11.59□□□□□ -0.55
PNKP-217ENST00000625216 FAM111BQ6SJ93 734 aa11.59□□□□□ -0.55
PNKP-217ENST00000625216 ANGPTL8Q6UXH0 198 aa11.59□□□□□ -0.55
PNKP-217ENST00000625216 RNF130Q86XS8 419 aa11.59□□□□□ -0.55
PNKP-217ENST00000625216 TMEM251Q8N6I4 163 aa11.59□□□□□ -0.55
PNKP-217ENST00000625216 HIPK4Q8NE63 616 aa11.59□□□□□ -0.55
PNKP-217ENST00000625216 BHLHE22Q8NFJ8 381 aaPredicted RBP11.59□□□□□ -0.55
PNKP-217ENST00000625216 OR7G2Q8NG99 324 aa11.59□□□□□ -0.55
PNKP-217ENST00000625216 REXO5Q96IC2 774 aaKnown RBP11.59□□□□□ -0.55
PNKP-217ENST00000625216 SLC35G5Q96KT7 338 aa11.59□□□□□ -0.55
PNKP-217ENST00000625216 OR10A5Q9H207 317 aa11.59□□□□□ -0.55
PNKP-217ENST00000625216 ZCCHC3Q9NUD5 404 aaKnown RBP11.59□□□□□ -0.55
PNKP-217ENST00000625216 QPCTLQ9NXS2 382 aa11.59□□□□□ -0.55
PNKP-217ENST00000625216 COQ3Q9NZJ6 369 aa11.59□□□□□ -0.55
PNKP-217ENST00000625216 MAT2BQ9NZL9 334 aa11.59□□□□□ -0.55
PNKP-217ENST00000625216 BOKQ9UMX3 212 aaPredicted RBP11.59□□□□□ -0.55
PNKP-217ENST00000625216 CORO2BQ9UQ03 480 aa11.59□□□□□ -0.55
PNKP-217ENST00000625216 SNX13Q9Y5W8 968 aa11.59□□□□□ -0.55
PNKP-217ENST00000625216 ITPR2Q14571 2701 aa11.58□□□□□ -0.56
PNKP-217ENST00000625216 GIMAP1-GIMAP5A0A087WTJ2 511 aa11.58□□□□□ -0.56
PNKP-217ENST00000625216 A0A0G2JMM0 328 aa11.58□□□□□ -0.56
PNKP-217ENST00000625216 A0A1W2PPB8 328 aa11.58□□□□□ -0.56
PNKP-217ENST00000625216 A0A1W2PRS3 328 aa11.58□□□□□ -0.56
PNKP-217ENST00000625216 ELOVL7A1L3X0 281 aa11.58□□□□□ -0.56
PNKP-217ENST00000625216 FAM166BA8MTA8 275 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms