RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 TSTD1Q8NFU3 115 aa9.89□□□□□ -0.83
CUX1-221ENST00000622516 CDADC1Q9BWV3 514 aa9.89□□□□□ -0.83
CUX1-221ENST00000622516 ATP13A2Q9NQ11 1180 aa9.89□□□□□ -0.83
CUX1-221ENST00000622516 C20orf141Q9NUB4 165 aa9.89□□□□□ -0.83
CUX1-221ENST00000622516 MAT2BQ9NZL9 334 aa9.89□□□□□ -0.83
CUX1-221ENST00000622516 DAPK2Q9UIK4 370 aa9.89□□□□□ -0.83
CUX1-221ENST00000622516 C19orf53Q9UNZ5 99 aaPredicted RBP9.89□□□□□ -0.83
CUX1-221ENST00000622516 YARS2Q9Y2Z4 477 aaKnown RBP9.89□□□□□ -0.83
CUX1-221ENST00000622516 CCRL2O00421 344 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 CHST10O43529 356 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 OR10H2O60403 315 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 SULT1C4O75897 302 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 SLITRK5O94991 958 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 PRKAR1BP31321 381 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 SEPHS1P49903 392 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 BTG2P78543 158 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 COX10Q12887 443 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 UBXN2BQ14CS0 331 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 PRICKLE4Q2TBC4 344 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 ARHGAP11BQ3KRB8 267 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 FHL5Q5TD97 284 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 NKAIN2Q5VXU1 208 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 THOC7Q6I9Y2 204 aaKnown RBP9.88□□□□□ -0.83
CUX1-221ENST00000622516 SLC27A4Q6P1M0 643 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 ZNF367Q7RTV3 350 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 SLC7A5P1Q8MH63 180 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 ZFP41Q8N8Y5 198 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 BBS1Q8NFJ9 593 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 OR52R1Q8NGF1 315 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 OR52I1Q8NGK6 324 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 OR4Q3Q8NH05 313 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 PFN4Q8NHR9 129 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 GATAD2BQ8WXI9 593 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 ANKRD9Q96BM1 317 aaPredicted RBP9.88□□□□□ -0.83
CUX1-221ENST00000622516 CRELD1Q96HD1 420 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 ORAI3Q9BRQ5 295 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 FOXQ1Q9C009 403 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 ENKD1Q9H0I2 346 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 ABCB10Q9NRK6 738 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 CALML5Q9NZT1 146 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 CAB39Q9Y376 341 aaPredicted RBP9.88□□□□□ -0.83
CUX1-221ENST00000622516 CSNK1G3Q9Y6M4 447 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 KIR2DS5A0A0G2JLQ3 304 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 A0A0G2JNG1 304 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 AGAP5A6NIR3 686 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 KIR2DS3K7RE56 304 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 SYT5O00445 386 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 ALOX5P09917 674 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 HTR2AP28223 471 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 SSTR4P31391 388 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 CSTF2P33240 577 aaKnown RBP eCLIP9.88□□□□□ -0.832e-6■■■□□ 18.4
CUX1-221ENST00000622516 SMSP52788 366 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 MADCAM1Q13477 382 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 KIR2DS5Q14953 304 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 LARS2Q15031 903 aaKnown RBP9.88□□□□□ -0.83
CUX1-221ENST00000622516 SLC35F1Q5T1Q4 408 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 USP43Q70EL4 1123 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 LHFPL3Q86UP9 236 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 LMX1AQ8TE12 382 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 GRHL3Q8TE85 626 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 COX4I2Q96KJ9 171 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 BCL7BQ9BQE9 202 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 DPH1Q9BZG8 443 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 NDOR1Q9UHB4 597 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 DTX4Q9Y2E6 619 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 PCDHGA3Q9Y5H0 932 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 ENTPD2Q9Y5L3 495 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 SPACA6W5XKT8 324 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 RP1P56715 2156 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 COL4A2P08572 1712 aa9.88□□□□□ -0.83
CUX1-221ENST00000622516 THADAQ6YHU6 1953 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 TGFBR3LH3BV60 316 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 GNB5O14775 395 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 ZNF136P52737 540 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 GFERP55789 205 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 TEKQ02763 1124 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 CSTF1Q05048 431 aaKnown RBP9.87□□□□□ -0.83
CUX1-221ENST00000622516 MGAT2Q10469 447 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 DUSP8Q13202 625 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 FLYWCH1Q4VC44 716 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 FCRLBQ6BAA4 426 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 RNF44Q7L0R7 432 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 MCATQ8IVS2 390 aaKnown RBP9.87□□□□□ -0.83
CUX1-221ENST00000622516 OR4F15Q8NGB8 312 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 PIGXQ8TBF5 258 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 GNPDA2Q8TDQ7 276 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 RNFT2Q96EX2 444 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 DACH2Q96NX9 599 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 POLDIP3Q9BY77 421 aaKnown RBP9.87□□□□□ -0.83
CUX1-221ENST00000622516 PIGUQ9H490 435 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 FAIMQ9NVQ4 179 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 PTGFRNQ9P2B2 879 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 ZC3H12DA2A288 527 aaKnown RBP9.87□□□□□ -0.83
CUX1-221ENST00000622516 METTL15A6NJ78 407 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 CTDSP2O14595 271 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 MYL12BO14950 172 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 STX11O75558 287 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 UBXN7O94888 489 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 ATP1B1P05026 303 aa9.87□□□□□ -0.83
CUX1-221ENST00000622516 MYF5P13349 255 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 96.5 ms