RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 ATAD3BQ5T9A4 648 aa13.69□□□□□ -0.22
UPF1-202ENST00000594243 OR5M10Q6IEU7 315 aa13.69□□□□□ -0.22
UPF1-202ENST00000594243 MARCH3Q86UD3 253 aa13.69□□□□□ -0.22
UPF1-202ENST00000594243 CD163Q86VB7 1156 aa13.69□□□□□ -0.22
UPF1-202ENST00000594243 MISPQ8IVT2 679 aa13.69□□□□□ -0.22
UPF1-202ENST00000594243 ZNF527Q8NB42 609 aa13.69□□□□□ -0.22
UPF1-202ENST00000594243 CHDHQ8NE62 594 aaPredicted RBP13.69□□□□□ -0.22
UPF1-202ENST00000594243 FAM83FQ8NEG4 500 aaPredicted RBP13.69□□□□□ -0.22
UPF1-202ENST00000594243 OR4K17Q8NGC6 315 aa13.69□□□□□ -0.22
UPF1-202ENST00000594243 OR9I1Q8NGQ6 314 aa13.69□□□□□ -0.22
UPF1-202ENST00000594243 RFWD2Q8NHY2 731 aa13.69□□□□□ -0.22
UPF1-202ENST00000594243 DUSP19Q8WTR2 217 aa13.69□□□□□ -0.22
UPF1-202ENST00000594243 VKORC1Q9BQB6 163 aa13.69□□□□□ -0.22
UPF1-202ENST00000594243 INPP5KQ9BT40 448 aa13.69□□□□□ -0.22
UPF1-202ENST00000594243 SLC6A15Q9H2J7 730 aa13.69□□□□□ -0.22
UPF1-202ENST00000594243 OR51I1Q9H343 314 aa13.69□□□□□ -0.22
UPF1-202ENST00000594243 PTGES2Q9H7Z7 377 aa13.69□□□□□ -0.22
UPF1-202ENST00000594243 FBXO34Q9NWN3 711 aa13.69□□□□□ -0.22
UPF1-202ENST00000594243 CCDC167Q9P0B6 97 aa13.69□□□□□ -0.22
UPF1-202ENST00000594243 MEMO1Q9Y316 297 aa13.69□□□□□ -0.22
UPF1-202ENST00000594243 KCNE3Q9Y6H6 103 aa13.69□□□□□ -0.22
UPF1-202ENST00000594243 RELNP78509 3460 aa13.68□□□□□ -0.22
UPF1-202ENST00000594243 C15orf38-AP3S2A0A0A6YYH1 394 aa13.68□□□□□ -0.22
UPF1-202ENST00000594243 A0A1W2PQD3 144 aa13.68□□□□□ -0.22
UPF1-202ENST00000594243 KRT75O95678 551 aa13.68□□□□□ -0.22
UPF1-202ENST00000594243 GSNP06396 782 aa13.68□□□□□ -0.22
UPF1-202ENST00000594243 ZCCHC18P0CG32 403 aa13.68□□□□□ -0.22
UPF1-202ENST00000594243 OR12D1P0DN82 309 aa13.68□□□□□ -0.22
UPF1-202ENST00000594243 SRD5A2P31213 254 aa13.68□□□□□ -0.22
UPF1-202ENST00000594243 CDKN2CP42773 168 aa13.68□□□□□ -0.22
UPF1-202ENST00000594243 DSCR4P56555 118 aaPredicted RBP13.68□□□□□ -0.22
UPF1-202ENST00000594243 RPS26P62854 115 aaKnown RBP13.68□□□□□ -0.22
UPF1-202ENST00000594243 FLYWCH1Q4VC44 716 aa13.68□□□□□ -0.22
UPF1-202ENST00000594243 TIGD2Q4W5G0 525 aa13.68□□□□□ -0.22
UPF1-202ENST00000594243 EIPR1Q53HC9 387 aa13.68□□□□□ -0.22
UPF1-202ENST00000594243 NHSL2Q5HYW2 709 aa13.68□□□□□ -0.22
UPF1-202ENST00000594243 WIPI1Q5MNZ9 446 aaPredicted RBP13.68□□□□□ -0.22
UPF1-202ENST00000594243 TMEM211Q6ICI0 200 aa13.68□□□□□ -0.22
UPF1-202ENST00000594243 BLOC1S3Q6QNY0 202 aa13.68□□□□□ -0.22
UPF1-202ENST00000594243 C16orf62Q7Z3J2 963 aa13.68□□□□□ -0.22
UPF1-202ENST00000594243 FADS6Q8N9I5 356 aa13.68□□□□□ -0.22
UPF1-202ENST00000594243 OR14L1PQ8NHC6 308 aa13.68□□□□□ -0.22
UPF1-202ENST00000594243 XAGE5Q8WWM1 108 aa13.68□□□□□ -0.22
UPF1-202ENST00000594243 VPS33AQ96AX1 596 aa13.68□□□□□ -0.22
UPF1-202ENST00000594243 PHF12Q96QT6 1004 aa13.68□□□□□ -0.22
UPF1-202ENST00000594243 SDF2Q99470 211 aa13.68□□□□□ -0.22
UPF1-202ENST00000594243 DSN1Q9H410 356 aa13.68□□□□□ -0.22
UPF1-202ENST00000594243 SERHL2Q9H4I8 314 aa13.68□□□□□ -0.22
UPF1-202ENST00000594243 FGFR1OP2Q9NVK5 253 aa13.68□□□□□ -0.22
UPF1-202ENST00000594243 SPRR3Q9UBC9 169 aa13.68□□□□□ -0.22
UPF1-202ENST00000594243 FBXL2Q9UKC9 423 aa13.68□□□□□ -0.22
UPF1-202ENST00000594243 FIGNL2A6NMB9 653 aa13.67□□□□□ -0.22
UPF1-202ENST00000594243 H3BNH8 94 aa13.67□□□□□ -0.22
UPF1-202ENST00000594243 WDR1O75083 606 aa13.67□□□□□ -0.22
UPF1-202ENST00000594243 STX11O75558 287 aa13.67□□□□□ -0.22
UPF1-202ENST00000594243 ACTL6AO96019 429 aa13.67□□□□□ -0.22
UPF1-202ENST00000594243 GUSBP08236 651 aa13.67□□□□□ -0.22
UPF1-202ENST00000594243 HOXD4P09016 255 aaPredicted RBP13.67□□□□□ -0.22
UPF1-202ENST00000594243 GABRA1P14867 456 aa13.67□□□□□ -0.22
UPF1-202ENST00000594243 ENDOUP21128 410 aaKnown RBP13.67□□□□□ -0.22
UPF1-202ENST00000594243 DPP4P27487 766 aa13.67□□□□□ -0.22
UPF1-202ENST00000594243 MSX1P28360 303 aa13.67□□□□□ -0.22
UPF1-202ENST00000594243 MAGEA8P43361 318 aa13.67□□□□□ -0.22
UPF1-202ENST00000594243 KHKP50053 298 aa13.67□□□□□ -0.22
UPF1-202ENST00000594243 ATP12AP54707 1039 aa13.67□□□□□ -0.22
UPF1-202ENST00000594243 CASP9P55211 416 aa13.67□□□□□ -0.22
UPF1-202ENST00000594243 STX5Q13190 355 aa13.67□□□□□ -0.22
UPF1-202ENST00000594243 RCAN2Q14206 197 aa13.67□□□□□ -0.22
UPF1-202ENST00000594243 GANABQ14697 944 aaKnown RBP13.67□□□□□ -0.22
UPF1-202ENST00000594243 AGKQ53H12 422 aa13.67□□□□□ -0.22
UPF1-202ENST00000594243 C6orf10Q5SRN2 563 aa13.67□□□□□ -0.22
UPF1-202ENST00000594243 HEPHL1Q6MZM0 1159 aa13.67□□□□□ -0.22
UPF1-202ENST00000594243 ZNF585AQ6P3V2 769 aa13.67□□□□□ -0.22
UPF1-202ENST00000594243 APOOLQ6UXV4 268 aa13.67□□□□□ -0.22
UPF1-202ENST00000594243 MTERF4Q7Z6M4 381 aaKnown RBP13.67□□□□□ -0.22
UPF1-202ENST00000594243 ZAR1Q86SH2 424 aa13.67□□□□□ -0.22
UPF1-202ENST00000594243 YRDCQ86U90 279 aaKnown RBP13.67□□□□□ -0.22
UPF1-202ENST00000594243 FUNDC1Q8IVP5 155 aa13.67□□□□□ -0.22
UPF1-202ENST00000594243 PM20D2Q8IYS1 436 aa13.67□□□□□ -0.22
UPF1-202ENST00000594243 OR2M3Q8NG83 312 aa13.67□□□□□ -0.22
UPF1-202ENST00000594243 OR5M9Q8NGP3 310 aa13.67□□□□□ -0.22
UPF1-202ENST00000594243 PHF10Q8WUB8 498 aaKnown RBP13.67□□□□□ -0.22
UPF1-202ENST00000594243 CCDC120Q96HB5 630 aa13.67□□□□□ -0.22
UPF1-202ENST00000594243 TIMP4Q99727 224 aa13.67□□□□□ -0.22
UPF1-202ENST00000594243 RTN4RQ9BZR6 473 aa13.67□□□□□ -0.22
UPF1-202ENST00000594243 OR2B2Q9GZK3 357 aa13.67□□□□□ -0.22
UPF1-202ENST00000594243 PNPLA3Q9NST1 481 aa13.67□□□□□ -0.22
UPF1-202ENST00000594243 MRGBPQ9NV56 204 aa13.67□□□□□ -0.22
UPF1-202ENST00000594243 TAS2R10Q9NYW0 307 aa13.67□□□□□ -0.22
UPF1-202ENST00000594243 MED11Q9P086 117 aa13.67□□□□□ -0.22
UPF1-202ENST00000594243 DKKL1Q9UK85 242 aa13.67□□□□□ -0.22
UPF1-202ENST00000594243 DOPEY2Q9Y3R5 2298 aa13.67□□□□□ -0.22
UPF1-202ENST00000594243 IGLV3-32A0A0A0MS00 114 aa13.66□□□□□ -0.22
UPF1-202ENST00000594243 DYNC1I1O14576 645 aa13.66□□□□□ -0.22
UPF1-202ENST00000594243 ADAM10O14672 748 aa13.66□□□□□ -0.22
UPF1-202ENST00000594243 BMP7P18075 431 aa13.66□□□□□ -0.22
UPF1-202ENST00000594243 DCTP40126 519 aa13.66□□□□□ -0.22
UPF1-202ENST00000594243 SMSP52788 366 aa13.66□□□□□ -0.22
UPF1-202ENST00000594243 ARFIP2P53365 341 aa13.66□□□□□ -0.22
UPF1-202ENST00000594243 SF3B4Q15427 424 aaKnown RBP eCLIP13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms