RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 CNPPD1Q9BV87 410 aa13.17□□□□□ -0.3
LIG3-205ENST00000585941 OR10A5Q9H207 317 aa13.17□□□□□ -0.3
LIG3-205ENST00000585941 ZNF304Q9HCX3 659 aa13.17□□□□□ -0.3
LIG3-205ENST00000585941 FKBP14Q9NWM8 211 aa13.17□□□□□ -0.3
LIG3-205ENST00000585941 CNOT2Q9NZN8 540 aaKnown RBP13.17□□□□□ -0.3
LIG3-205ENST00000585941 SRPK3Q9UPE1 567 aa13.17□□□□□ -0.3
LIG3-205ENST00000585941 CFL2Q9Y281 166 aa13.17□□□□□ -0.3
LIG3-205ENST00000585941 TMEM184BQ9Y519 407 aaPredicted RBP13.17□□□□□ -0.3
LIG3-205ENST00000585941 RP1P56715 2156 aa13.17□□□□□ -0.3
LIG3-205ENST00000585941 A0A1B0GX78 115 aa13.16□□□□□ -0.3
LIG3-205ENST00000585941 EFCAB10A6NFE3 127 aa13.16□□□□□ -0.3
LIG3-205ENST00000585941 TNNI3P19429 210 aa13.16□□□□□ -0.3
LIG3-205ENST00000585941 DRD5P21918 477 aa13.16□□□□□ -0.3
LIG3-205ENST00000585941 FBLP22087 321 aaKnown RBP13.16□□□□□ -0.3
LIG3-205ENST00000585941 SSTR4P31391 388 aa13.16□□□□□ -0.3
LIG3-205ENST00000585941 ZNF136P52737 540 aa13.16□□□□□ -0.3
LIG3-205ENST00000585941 ACY1Q03154 408 aa13.16□□□□□ -0.3
LIG3-205ENST00000585941 MAPK14Q16539 360 aa13.16□□□□□ -0.3
LIG3-205ENST00000585941 HLA-BQ31612 363 aa13.16□□□□□ -0.3
LIG3-205ENST00000585941 TMEM201Q5SNT2 666 aa13.16□□□□□ -0.3
LIG3-205ENST00000585941 GDF7Q7Z4P5 450 aa13.16□□□□□ -0.3
LIG3-205ENST00000585941 CCDC103Q8IW40 242 aa13.16□□□□□ -0.3
LIG3-205ENST00000585941 CMIPQ8IY22 773 aa13.16□□□□□ -0.3
LIG3-205ENST00000585941 METTL27Q8N6F8 245 aaPredicted RBP13.16□□□□□ -0.3
LIG3-205ENST00000585941 OR8J1Q8NGP2 316 aa13.16□□□□□ -0.3
LIG3-205ENST00000585941 FAR1Q8WVX9 515 aa13.16□□□□□ -0.3
LIG3-205ENST00000585941 C12orf43Q96C57 262 aaKnown RBP13.16□□□□□ -0.3
LIG3-205ENST00000585941 ZNF501Q96CX3 271 aaPredicted RBP13.16□□□□□ -0.3
LIG3-205ENST00000585941 MPP4Q96JB8 637 aa13.16□□□□□ -0.3
LIG3-205ENST00000585941 PTCHD1Q96NR3 888 aa13.16□□□□□ -0.3
LIG3-205ENST00000585941 ZNF559Q9BR84 538 aa13.16□□□□□ -0.3
LIG3-205ENST00000585941 YIPF2Q9BWQ6 316 aa13.16□□□□□ -0.3
LIG3-205ENST00000585941 PRRG3Q9BZD7 231 aa13.16□□□□□ -0.3
LIG3-205ENST00000585941 NECTIN3Q9NQS3 549 aa13.16□□□□□ -0.3
LIG3-205ENST00000585941 CTPS2Q9NRF8 586 aa13.16□□□□□ -0.3
LIG3-205ENST00000585941 FGF21Q9NSA1 209 aa13.16□□□□□ -0.3
LIG3-205ENST00000585941 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.16□□□□□ -0.3
LIG3-205ENST00000585941 AASSQ9UDR5 926 aa13.16□□□□□ -0.3
LIG3-205ENST00000585941 ERVK-19Q9WJR5 959 aa13.16□□□□□ -0.3
LIG3-205ENST00000585941 FOLR1P15328 257 aa13.15□□□□□ -0.3
LIG3-205ENST00000585941 FPR3P25089 353 aa13.15□□□□□ -0.3
LIG3-205ENST00000585941 SMSP52788 366 aa13.15□□□□□ -0.3
LIG3-205ENST00000585941 PIGFQ07326 219 aa13.15□□□□□ -0.3
LIG3-205ENST00000585941 SRSF5Q13243 272 aaKnown RBP13.15□□□□□ -0.3
LIG3-205ENST00000585941 COL9A2Q14055 689 aaPredicted RBP13.15□□□□□ -0.3
LIG3-205ENST00000585941 CLPPQ16740 277 aaPredicted RBP13.15□□□□□ -0.3
LIG3-205ENST00000585941 SYT6Q5T7P8 510 aaPredicted RBP13.15□□□□□ -0.3
LIG3-205ENST00000585941 RASSF6Q6ZTQ3 369 aa13.15□□□□□ -0.3
LIG3-205ENST00000585941 MBOAT2Q6ZWT7 520 aa13.15□□□□□ -0.3
LIG3-205ENST00000585941 AHSA2Q719I0 299 aa13.15□□□□□ -0.3
LIG3-205ENST00000585941 GATAD2AQ86YP4 633 aa13.15□□□□□ -0.3
LIG3-205ENST00000585941 RNF113BQ8IZP6 322 aaKnown RBP13.15□□□□□ -0.3
LIG3-205ENST00000585941 ZNF615Q8N8J6 731 aa13.15□□□□□ -0.3
LIG3-205ENST00000585941 TEX12Q9BXU0 123 aa13.15□□□□□ -0.3
LIG3-205ENST00000585941 SLC25A19Q9HC21 320 aa13.15□□□□□ -0.3
LIG3-205ENST00000585941 FBXO34Q9NWN3 711 aa13.15□□□□□ -0.3
LIG3-205ENST00000585941 WARS2Q9UGM6 360 aaKnown RBP13.15□□□□□ -0.3
LIG3-205ENST00000585941 KCNE5Q9UJ90 142 aa13.15□□□□□ -0.3
LIG3-205ENST00000585941 FBXO4Q9UKT5 387 aa13.15□□□□□ -0.3
LIG3-205ENST00000585941 MAU2Q9Y6X3 613 aa13.15□□□□□ -0.3
LIG3-205ENST00000585941 ADAMTS20P59510 1910 aa13.15□□□□□ -0.3
LIG3-205ENST00000585941 IGKV3D-11A0A0A0MRZ8 115 aa13.15□□□□□ -0.31
LIG3-205ENST00000585941 TRIM64BA6NI03 449 aa13.15□□□□□ -0.31
LIG3-205ENST00000585941 A8MU76 341 aa13.15□□□□□ -0.31
LIG3-205ENST00000585941 C17orf105B2RV13 164 aa13.15□□□□□ -0.31
LIG3-205ENST00000585941 H3BMQ9 156 aa13.15□□□□□ -0.31
LIG3-205ENST00000585941 PEX12O00623 359 aa13.15□□□□□ -0.31
LIG3-205ENST00000585941 SOX14O95416 240 aa13.15□□□□□ -0.31
LIG3-205ENST00000585941 MT-ND2P03891 347 aa13.15□□□□□ -0.31
LIG3-205ENST00000585941 TP53P04637 393 aaPredicted RBP13.15□□□□□ -0.31
LIG3-205ENST00000585941 CDK1P06493 297 aa13.15□□□□□ -0.31
LIG3-205ENST00000585941 PIPP12273 146 aaPredicted RBP13.15□□□□□ -0.31
LIG3-205ENST00000585941 STAT5AP42229 794 aa13.15□□□□□ -0.31
LIG3-205ENST00000585941 OR1D4P47884 311 aa13.15□□□□□ -0.31
LIG3-205ENST00000585941 GIPRP48546 466 aa13.15□□□□□ -0.31
LIG3-205ENST00000585941 ST13P50502 369 aaKnown RBP13.15□□□□□ -0.31
LIG3-205ENST00000585941 PGDP52209 483 aa13.15□□□□□ -0.31
LIG3-205ENST00000585941 TBCEQ15813 527 aaPredicted RBP13.15□□□□□ -0.31
LIG3-205ENST00000585941 ZNF141Q15928 474 aa13.15□□□□□ -0.31
LIG3-205ENST00000585941 SLC25A30Q5SVS4 291 aa13.15□□□□□ -0.31
LIG3-205ENST00000585941 TMEM236Q5W0B7 351 aa13.15□□□□□ -0.31
LIG3-205ENST00000585941 ZNF613Q6PF04 617 aa13.15□□□□□ -0.31
LIG3-205ENST00000585941 OR4D9Q8NGE8 314 aa13.15□□□□□ -0.31
LIG3-205ENST00000585941 C16orf52Q8NHV5 167 aa13.15□□□□□ -0.31
LIG3-205ENST00000585941 C9orf43Q8TAL5 461 aaPredicted RBP13.15□□□□□ -0.31
LIG3-205ENST00000585941 TEX47Q8TBZ9 253 aa13.15□□□□□ -0.31
LIG3-205ENST00000585941 GGHQ92820 318 aa13.15□□□□□ -0.31
LIG3-205ENST00000585941 ART5Q96L15 291 aa13.15□□□□□ -0.31
LIG3-205ENST00000585941 COG8Q96MW5 612 aa13.15□□□□□ -0.31
LIG3-205ENST00000585941 SLC46A1Q96NT5 459 aa13.15□□□□□ -0.31
LIG3-205ENST00000585941 NUDT22Q9BRQ3 303 aa13.15□□□□□ -0.31
LIG3-205ENST00000585941 POLDIP3Q9BY77 421 aaKnown RBP13.15□□□□□ -0.31
LIG3-205ENST00000585941 CAPN10Q9HC96 672 aa13.15□□□□□ -0.31
LIG3-205ENST00000585941 MKKSQ9NPJ1 570 aaPredicted RBP13.15□□□□□ -0.31
LIG3-205ENST00000585941 ACOT13Q9NPJ3 140 aa13.15□□□□□ -0.31
LIG3-205ENST00000585941 C11orf16Q9NQ32 467 aa13.15□□□□□ -0.31
LIG3-205ENST00000585941 OR10H1Q9Y4A9 318 aa13.15□□□□□ -0.31
LIG3-205ENST00000585941 SEC16AO15027 2179 aa13.14□□□□□ -0.31
LIG3-205ENST00000585941 CENPVL1A0A0U1RR11 272 aa13.14□□□□□ -0.31
LIG3-205ENST00000585941 CPED1A4D0V7 1026 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms