RNA–Protein interactions for RNA: ENST00000572043.5

CTDNEP1-207, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 3 BASIC

Gene CTDNEP1, Length 857 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-207ENST00000572043 MBD3L3A6NE82 208 aaPredicted RBP16.1■□□□□ 0.17
CTDNEP1-207ENST00000572043 MBD3L5A6NJ08 208 aaPredicted RBP16.1■□□□□ 0.17
CTDNEP1-207ENST00000572043 SHISA8B8ZZ34 492 aa16.1■□□□□ 0.17
CTDNEP1-207ENST00000572043 OXSR1O95747 527 aaPredicted RBP16.1■□□□□ 0.17
CTDNEP1-207ENST00000572043 POU3F2P20265 443 aaPredicted RBP16.1■□□□□ 0.17
CTDNEP1-207ENST00000572043 DLX5P56178 289 aa16.1■□□□□ 0.17
CTDNEP1-207ENST00000572043 CLDN8P56748 225 aa16.1■□□□□ 0.17
CTDNEP1-207ENST00000572043 WDR4P57081 412 aaKnown RBP16.1■□□□□ 0.17
CTDNEP1-207ENST00000572043 B3GALT5-AS1P59052 145 aa16.1■□□□□ 0.17
CTDNEP1-207ENST00000572043 MYBPHQ13203 477 aa16.1■□□□□ 0.17
CTDNEP1-207ENST00000572043 LSM12Q3MHD2 195 aaKnown RBP16.1■□□□□ 0.17
CTDNEP1-207ENST00000572043 BEND6Q5SZJ8 279 aaPredicted RBP16.1■□□□□ 0.17
CTDNEP1-207ENST00000572043 OR4F3Q6IEY1 312 aa16.1■□□□□ 0.17
CTDNEP1-207ENST00000572043 ZCCHC12Q6PEW1 402 aa16.1■□□□□ 0.17
CTDNEP1-207ENST00000572043 LURAP1LQ8IV03 231 aa16.1■□□□□ 0.17
CTDNEP1-207ENST00000572043 RIMKLAQ8IXN7 391 aa16.1■□□□□ 0.17
CTDNEP1-207ENST00000572043 CLECL1Q8IZS7 167 aa16.1■□□□□ 0.17
CTDNEP1-207ENST00000572043 CLEC4FQ8N1N0 589 aa16.1■□□□□ 0.17
CTDNEP1-207ENST00000572043 MBD3L2Q8NHZ7 208 aaPredicted RBP16.1■□□□□ 0.17
CTDNEP1-207ENST00000572043 SMPDL3BQ92485 455 aa16.1■□□□□ 0.17
CTDNEP1-207ENST00000572043 C1GALT1C1Q96EU7 318 aa16.1■□□□□ 0.17
CTDNEP1-207ENST00000572043 TREX2Q9BQ50 279 aaPredicted RBP16.1■□□□□ 0.17
CTDNEP1-207ENST00000572043 G6PC3Q9BUM1 346 aa16.1■□□□□ 0.17
CTDNEP1-207ENST00000572043 BHLHE41Q9C0J9 482 aaPredicted RBP16.1■□□□□ 0.17
CTDNEP1-207ENST00000572043 PTGES2Q9H7Z7 377 aa16.1■□□□□ 0.17
CTDNEP1-207ENST00000572043 CALHM2Q9HA72 323 aa16.1■□□□□ 0.17
CTDNEP1-207ENST00000572043 MARCOQ9UEW3 520 aaPredicted RBP16.1■□□□□ 0.17
CTDNEP1-207ENST00000572043 FAF1Q9UNN5 650 aaPredicted RBP16.1■□□□□ 0.17
CTDNEP1-207ENST00000572043 UNC79Q9P2D8 2635 aa16.09■□□□□ 0.17
CTDNEP1-207ENST00000572043 EEF1E1-BLOC1S5C9J1V9 151 aa16.09■□□□□ 0.17
CTDNEP1-207ENST00000572043 H0YC42 278 aa16.09■□□□□ 0.17
CTDNEP1-207ENST00000572043 H3BML4 177 aa16.09■□□□□ 0.17
CTDNEP1-207ENST00000572043 SEC14L5O43304 696 aa16.09■□□□□ 0.17
CTDNEP1-207ENST00000572043 EEF1E1O43324 174 aaKnown RBP16.09■□□□□ 0.17
CTDNEP1-207ENST00000572043 NDUFB5O43674 189 aa16.09■□□□□ 0.17
CTDNEP1-207ENST00000572043 TMIGD3P0DMS9 266 aaPredicted RBP16.09■□□□□ 0.17
CTDNEP1-207ENST00000572043 HPGDP15428 266 aa16.09■□□□□ 0.17
CTDNEP1-207ENST00000572043 CHMP24386 653 aa16.09■□□□□ 0.17
CTDNEP1-207ENST00000572043 TPD52P55327 224 aaPredicted RBP16.09■□□□□ 0.17
CTDNEP1-207ENST00000572043 NME5P56597 212 aa16.09■□□□□ 0.17
CTDNEP1-207ENST00000572043 CLDN18P56856 261 aa16.09■□□□□ 0.17
CTDNEP1-207ENST00000572043 HBA1P69905 142 aa16.09■□□□□ 0.17
CTDNEP1-207ENST00000572043 POU6F2P78424 691 aaPredicted RBP16.09■□□□□ 0.17
CTDNEP1-207ENST00000572043 C17orf67Q0P5P2 114 aa16.09■□□□□ 0.17
CTDNEP1-207ENST00000572043 FOXF2Q12947 444 aa16.09■□□□□ 0.17
CTDNEP1-207ENST00000572043 CPEB4Q17RY0 729 aaKnown RBP eCLIP16.09■□□□□ 0.17
CTDNEP1-207ENST00000572043 ARSKQ6UWY0 536 aa16.09■□□□□ 0.17
CTDNEP1-207ENST00000572043 OR56A1Q8NGH5 318 aa16.09■□□□□ 0.17
CTDNEP1-207ENST00000572043 FAM110BQ8TC76 370 aa16.09■□□□□ 0.17
CTDNEP1-207ENST00000572043 C14orf79Q96F83 325 aa16.09■□□□□ 0.17
CTDNEP1-207ENST00000572043 SH3YL1Q96HL8 342 aaPredicted RBP16.09■□□□□ 0.17
CTDNEP1-207ENST00000572043 DPY30Q9C005 99 aa16.09■□□□□ 0.17
CTDNEP1-207ENST00000572043 ASIC5Q9NY37 505 aa16.09■□□□□ 0.17
CTDNEP1-207ENST00000572043 VDAC3Q9Y277 283 aa16.09■□□□□ 0.17
CTDNEP1-207ENST00000572043 MRPS18CQ9Y3D5 142 aaKnown RBP16.09■□□□□ 0.17
CTDNEP1-207ENST00000572043 KCNE3Q9Y6H6 103 aa16.09■□□□□ 0.17
CTDNEP1-207ENST00000572043 NPIPA5A0A0B4J1W7 369 aa16.08■□□□□ 0.16
CTDNEP1-207ENST00000572043 NPIPA7E9PJI5 369 aa16.08■□□□□ 0.16
CTDNEP1-207ENST00000572043 SNUPNO95149 360 aaKnown RBP16.08■□□□□ 0.16
CTDNEP1-207ENST00000572043 NPIPA8P0DM63 369 aa16.08■□□□□ 0.16
CTDNEP1-207ENST00000572043 KITP10721 976 aa16.08■□□□□ 0.16
CTDNEP1-207ENST00000572043 ZNF708P17019 499 aa16.08■□□□□ 0.16
CTDNEP1-207ENST00000572043 LBPP18428 481 aa16.08■□□□□ 0.16
CTDNEP1-207ENST00000572043 CTSSP25774 331 aa16.08■□□□□ 0.16
CTDNEP1-207ENST00000572043 RPS26P62854 115 aaKnown RBP16.08■□□□□ 0.16
CTDNEP1-207ENST00000572043 EXOSC6Q5RKV6 272 aaKnown RBP16.08■□□□□ 0.16
CTDNEP1-207ENST00000572043 CDC73Q6P1J9 531 aa16.08■□□□□ 0.16
CTDNEP1-207ENST00000572043 POMZP3Q6PJE2 187 aa16.08■□□□□ 0.16
CTDNEP1-207ENST00000572043 CHMP1BQ7LBR1 199 aa16.08■□□□□ 0.16
CTDNEP1-207ENST00000572043 ANKRD46Q86W74 232 aa16.08■□□□□ 0.16
CTDNEP1-207ENST00000572043 GRAMD2AQ8IUY3 354 aa16.08■□□□□ 0.16
CTDNEP1-207ENST00000572043 GCNT2Q8N0V5 402 aa16.08■□□□□ 0.16
CTDNEP1-207ENST00000572043 NATD1Q8N6N6 113 aa16.08■□□□□ 0.16
CTDNEP1-207ENST00000572043 ADAMTS15Q8TE58 950 aa16.08■□□□□ 0.16
CTDNEP1-207ENST00000572043 INTS12Q96CB8 462 aaKnown RBP16.08■□□□□ 0.16
CTDNEP1-207ENST00000572043 ZNF559Q9BR84 538 aa16.08■□□□□ 0.16
CTDNEP1-207ENST00000572043 BTBD2Q9BX70 525 aa16.08■□□□□ 0.16
CTDNEP1-207ENST00000572043 ACTRT3Q9BYD9 372 aa16.08■□□□□ 0.16
CTDNEP1-207ENST00000572043 PIGUQ9H490 435 aa16.08■□□□□ 0.16
CTDNEP1-207ENST00000572043 TMBIM4Q9HC24 238 aa16.08■□□□□ 0.16
CTDNEP1-207ENST00000572043 NEUROD4Q9HD90 331 aa16.08■□□□□ 0.16
CTDNEP1-207ENST00000572043 GPATCH2Q9NW75 528 aa16.08■□□□□ 0.16
CTDNEP1-207ENST00000572043 NKIRAS1Q9NYS0 192 aa16.08■□□□□ 0.16
CTDNEP1-207ENST00000572043 ZNF629Q9UEG4 869 aaPredicted RBP16.08■□□□□ 0.16
CTDNEP1-207ENST00000572043 HAO1Q9UJM8 370 aa16.08■□□□□ 0.16
CTDNEP1-207ENST00000572043 ZNF337Q9Y3M9 751 aa16.08■□□□□ 0.16
CTDNEP1-207ENST00000572043 OR2M5A3KFT3 312 aa16.07■□□□□ 0.16
CTDNEP1-207ENST00000572043 ALG1L2C9J202 215 aa16.07■□□□□ 0.16
CTDNEP1-207ENST00000572043 SCDO00767 359 aa16.07■□□□□ 0.16
CTDNEP1-207ENST00000572043 PEPDP12955 493 aa16.07■□□□□ 0.16
CTDNEP1-207ENST00000572043 ATP6V1C1P21283 382 aa16.07■□□□□ 0.16
CTDNEP1-207ENST00000572043 TBXA2RP21731 343 aa16.07■□□□□ 0.16
CTDNEP1-207ENST00000572043 ASCL1P50553 236 aa16.07■□□□□ 0.16
CTDNEP1-207ENST00000572043 CASP9P55211 416 aa16.07■□□□□ 0.16
CTDNEP1-207ENST00000572043 GANABQ14697 944 aaKnown RBP16.07■□□□□ 0.16
CTDNEP1-207ENST00000572043 SMU1Q2TAY7 513 aa16.07■□□□□ 0.16
CTDNEP1-207ENST00000572043 P4HA3Q7Z4N8 544 aa16.07■□□□□ 0.16
CTDNEP1-207ENST00000572043 OR5D16Q8NGK9 328 aa16.07■□□□□ 0.16
CTDNEP1-207ENST00000572043 OR4A15Q8NGL6 344 aa16.07■□□□□ 0.16
CTDNEP1-207ENST00000572043 PSMA8Q8TAA3 256 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms