RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 LARP4Q71RC2 724 aaKnown RBP eCLIP9.88□□□□□ -0.83
VPS53-207ENST00000570510 DTX2Q86UW9 622 aa9.88□□□□□ -0.83
VPS53-207ENST00000570510 EXOC3L1Q86VI1 746 aa9.88□□□□□ -0.83
VPS53-207ENST00000570510 NUDT13Q86X67 352 aa9.88□□□□□ -0.83
VPS53-207ENST00000570510 FBXL14Q8N1E6 418 aa9.88□□□□□ -0.83
VPS53-207ENST00000570510 RNF175Q8N4F7 328 aa9.88□□□□□ -0.83
VPS53-207ENST00000570510 BANPQ8N9N5 519 aa9.88□□□□□ -0.83
VPS53-207ENST00000570510 DCAKDQ8WVC6 231 aa9.88□□□□□ -0.83
VPS53-207ENST00000570510 GCDHQ92947 438 aaPredicted RBP9.88□□□□□ -0.83
VPS53-207ENST00000570510 KISS1RQ969F8 398 aaPredicted RBP9.88□□□□□ -0.83
VPS53-207ENST00000570510 MUCL1Q96DR8 90 aa9.88□□□□□ -0.83
VPS53-207ENST00000570510 C1orf159Q96HA4 380 aa9.88□□□□□ -0.83
VPS53-207ENST00000570510 REXO5Q96IC2 774 aaKnown RBP9.88□□□□□ -0.83
VPS53-207ENST00000570510 GPR78Q96P69 363 aa9.88□□□□□ -0.83
VPS53-207ENST00000570510 USB1Q9BQ65 265 aaKnown RBP9.88□□□□□ -0.83
VPS53-207ENST00000570510 MRPL57Q9BQC6 102 aaKnown RBP9.88□□□□□ -0.83
VPS53-207ENST00000570510 FBXO34Q9NWN3 711 aa9.88□□□□□ -0.83
VPS53-207ENST00000570510 PAQR5Q9NXK6 330 aaPredicted RBP9.88□□□□□ -0.83
VPS53-207ENST00000570510 ANGPTL3Q9Y5C1 460 aa9.88□□□□□ -0.83
VPS53-207ENST00000570510 AP4B1Q9Y6B7 739 aa9.88□□□□□ -0.83
VPS53-207ENST00000570510 FREM1Q5H8C1 2179 aa9.87□□□□□ -0.83
VPS53-207ENST00000570510 A0A0A6YYD5 115 aa9.87□□□□□ -0.83
VPS53-207ENST00000570510 OR2M5A3KFT3 312 aa9.87□□□□□ -0.83
VPS53-207ENST00000570510 H3BQF6 201 aa9.87□□□□□ -0.83
VPS53-207ENST00000570510 TMPRSS11DO60235 418 aa9.87□□□□□ -0.83
VPS53-207ENST00000570510 RAMP1O60894 148 aa9.87□□□□□ -0.83
VPS53-207ENST00000570510 SS18L1O75177 396 aaPredicted RBP9.87□□□□□ -0.83
VPS53-207ENST00000570510 ERAL1O75616 437 aaKnown RBP9.87□□□□□ -0.83
VPS53-207ENST00000570510 MTHFD2P13995 350 aa9.87□□□□□ -0.83
VPS53-207ENST00000570510 CLK3P49761 638 aaKnown RBP9.87□□□□□ -0.83
VPS53-207ENST00000570510 STX5Q13190 355 aa9.87□□□□□ -0.83
VPS53-207ENST00000570510 OR4D1Q15615 310 aa9.87□□□□□ -0.83
VPS53-207ENST00000570510 TSC22D1Q15714 1073 aa9.87□□□□□ -0.83
VPS53-207ENST00000570510 STK11Q15831 433 aa9.87□□□□□ -0.83
VPS53-207ENST00000570510 CARTPTQ16568 116 aa9.87□□□□□ -0.83
VPS53-207ENST00000570510 CR1LQ2VPA4 569 aa9.87□□□□□ -0.83
VPS53-207ENST00000570510 TMEM201Q5SNT2 666 aa9.87□□□□□ -0.83
VPS53-207ENST00000570510 MRM1Q6IN84 353 aaKnown RBP9.87□□□□□ -0.83
VPS53-207ENST00000570510 EMBQ6PCB8 327 aa9.87□□□□□ -0.83
VPS53-207ENST00000570510 FAM111BQ6SJ93 734 aa9.87□□□□□ -0.83
VPS53-207ENST00000570510 CMC1Q7Z7K0 106 aa9.87□□□□□ -0.83
VPS53-207ENST00000570510 RIBC1Q8N443 379 aaPredicted RBP9.87□□□□□ -0.83
VPS53-207ENST00000570510 SPATA6LQ8N4H0 392 aa9.87□□□□□ -0.83
VPS53-207ENST00000570510 METTL25Q8N6Q8 603 aa9.87□□□□□ -0.83
VPS53-207ENST00000570510 OR52R1Q8NGF1 315 aa9.87□□□□□ -0.83
VPS53-207ENST00000570510 OR2W6PQ8NHA6 318 aa9.87□□□□□ -0.83
VPS53-207ENST00000570510 PIWIL2Q8TC59 973 aaKnown RBP9.87□□□□□ -0.83
VPS53-207ENST00000570510 C10orf105Q8TEF2 133 aa9.87□□□□□ -0.83
VPS53-207ENST00000570510 NXNL1Q96CM4 212 aa9.87□□□□□ -0.83
VPS53-207ENST00000570510 MSI2Q96DH6 328 aaKnown RBP9.87□□□□□ -0.83
VPS53-207ENST00000570510 C1QTNF3Q9BXJ4 246 aa9.87□□□□□ -0.83
VPS53-207ENST00000570510 ALG9Q9H6U8 611 aa9.87□□□□□ -0.83
VPS53-207ENST00000570510 DDX31Q9H8H2 851 aaKnown RBP9.87□□□□□ -0.83
VPS53-207ENST00000570510 CBLN4Q9NTU7 201 aa9.87□□□□□ -0.83
VPS53-207ENST00000570510 MED11Q9P086 117 aa9.87□□□□□ -0.83
VPS53-207ENST00000570510 PSMC3IPQ9P2W1 217 aaPredicted RBP9.87□□□□□ -0.83
VPS53-207ENST00000570510 OPTCQ9UBM4 332 aa9.87□□□□□ -0.83
VPS53-207ENST00000570510 PSME2Q9UL46 239 aa9.87□□□□□ -0.83
VPS53-207ENST00000570510 STK38LQ9Y2H1 464 aa9.87□□□□□ -0.83
VPS53-207ENST00000570510 PLLPQ9Y342 182 aa9.87□□□□□ -0.83
VPS53-207ENST00000570510 OR10H1Q9Y4A9 318 aa9.87□□□□□ -0.83
VPS53-207ENST00000570510 PCDHGA11Q9Y5H2 935 aa9.87□□□□□ -0.83
VPS53-207ENST00000570510 ESPNB1AK53 854 aa9.86□□□□□ -0.83
VPS53-207ENST00000570510 ABCD4O14678 606 aa9.86□□□□□ -0.83
VPS53-207ENST00000570510 GUCY1B2O75343 617 aa9.86□□□□□ -0.83
VPS53-207ENST00000570510 PIAS1O75925 651 aa9.86□□□□□ -0.83
VPS53-207ENST00000570510 PABPC4LP0CB38 370 aaKnown RBP9.86□□□□□ -0.83
VPS53-207ENST00000570510 S1PR1P21453 382 aa9.86□□□□□ -0.83
VPS53-207ENST00000570510 BSGP35613 385 aa9.86□□□□□ -0.83
VPS53-207ENST00000570510 FEN1P39748 380 aaKnown RBP9.86□□□□□ -0.83
VPS53-207ENST00000570510 SLC6A8P48029 635 aa9.86□□□□□ -0.83
VPS53-207ENST00000570510 MAP4K2Q12851 820 aa9.86□□□□□ -0.83
VPS53-207ENST00000570510 SLC29A2Q14542 456 aa9.86□□□□□ -0.83
VPS53-207ENST00000570510 TECRLQ5HYJ1 363 aa9.86□□□□□ -0.83
VPS53-207ENST00000570510 PDSS1Q5T2R2 415 aa9.86□□□□□ -0.83
VPS53-207ENST00000570510 SFRP5Q5T4F7 317 aa9.86□□□□□ -0.83
VPS53-207ENST00000570510 GRHL2Q6ISB3 625 aa9.86□□□□□ -0.83
VPS53-207ENST00000570510 SLC22A25Q6T423 547 aa9.86□□□□□ -0.83
VPS53-207ENST00000570510 ATG4DQ86TL0 474 aaPredicted RBP9.86□□□□□ -0.83
VPS53-207ENST00000570510 DEPDC4Q8N2C3 294 aa9.86□□□□□ -0.83
VPS53-207ENST00000570510 MUC15Q8N387 334 aa9.86□□□□□ -0.83
VPS53-207ENST00000570510 KCTD4Q8WVF5 259 aa9.86□□□□□ -0.83
VPS53-207ENST00000570510 CCDC126Q96EE4 140 aa9.86□□□□□ -0.83
VPS53-207ENST00000570510 RADILQ96JH8 1075 aa9.86□□□□□ -0.83
VPS53-207ENST00000570510 PKNOX2Q96KN3 472 aa9.86□□□□□ -0.83
VPS53-207ENST00000570510 RHOXF2Q9BQY4 288 aa9.86□□□□□ -0.83
VPS53-207ENST00000570510 PIMREGQ9BSJ6 248 aa9.86□□□□□ -0.83
VPS53-207ENST00000570510 MRPL46Q9H2W6 279 aaKnown RBP9.86□□□□□ -0.83
VPS53-207ENST00000570510 PFDN4Q9NQP4 134 aa9.86□□□□□ -0.83
VPS53-207ENST00000570510 DCDC2Q9UHG0 476 aa9.86□□□□□ -0.83
VPS53-207ENST00000570510 ALPK2Q86TB3 2170 aa9.85□□□□□ -0.83
VPS53-207ENST00000570510 DPRXA6NFQ7 191 aa9.85□□□□□ -0.83
VPS53-207ENST00000570510 SUPT3HB4E1H0 165 aa9.85□□□□□ -0.83
VPS53-207ENST00000570510 TRIM49D1C9J1S8 452 aa9.85□□□□□ -0.83
VPS53-207ENST00000570510 H0YIV9 168 aa9.85□□□□□ -0.83
VPS53-207ENST00000570510 FOXE1O00358 373 aaPredicted RBP9.85□□□□□ -0.83
VPS53-207ENST00000570510 TO15178 435 aa9.85□□□□□ -0.83
VPS53-207ENST00000570510 GMFGO60234 142 aa9.85□□□□□ -0.83
VPS53-207ENST00000570510 SMIM24O75264 130 aa9.85□□□□□ -0.83
VPS53-207ENST00000570510 SUPT3HO75486 399 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms