RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 FADS6Q8N9I5 356 aa13.65□□□□□ -0.22
VPS39-210ENST00000568357 OR2M3Q8NG83 312 aa13.65□□□□□ -0.22
VPS39-210ENST00000568357 OR8J2Q8NGG1 315 aa13.65□□□□□ -0.22
VPS39-210ENST00000568357 ASB5Q8WWX0 329 aa13.65□□□□□ -0.22
VPS39-210ENST00000568357 JADE3Q92613 823 aa13.65□□□□□ -0.22
VPS39-210ENST00000568357 TEX37Q96LM6 180 aa13.65□□□□□ -0.22
VPS39-210ENST00000568357 CHST11Q9NPF2 352 aa13.65□□□□□ -0.22
VPS39-210ENST00000568357 Q9UFV3 132 aa13.65□□□□□ -0.22
VPS39-210ENST00000568357 ITGB1BP2Q9UKP3 347 aa13.65□□□□□ -0.22
VPS39-210ENST00000568357 MRPS18CQ9Y3D5 142 aaKnown RBP13.65□□□□□ -0.22
VPS39-210ENST00000568357 KCNE3Q9Y6H6 103 aa13.65□□□□□ -0.22
VPS39-210ENST00000568357 DNAJC13O75165 2243 aa13.65□□□□□ -0.22
VPS39-210ENST00000568357 ZNF195O14628 629 aa13.64□□□□□ -0.23
VPS39-210ENST00000568357 KLF11O14901 512 aa13.64□□□□□ -0.23
VPS39-210ENST00000568357 EPPINO95925 133 aa13.64□□□□□ -0.23
VPS39-210ENST00000568357 TCEA1P23193 301 aaKnown RBP13.64□□□□□ -0.23
VPS39-210ENST00000568357 DPP4P27487 766 aa13.64□□□□□ -0.23
VPS39-210ENST00000568357 CHRNB4P30926 498 aa13.64□□□□□ -0.23
VPS39-210ENST00000568357 PTGER4P35408 488 aa13.64□□□□□ -0.23
VPS39-210ENST00000568357 STARP49675 285 aa13.64□□□□□ -0.23
VPS39-210ENST00000568357 CLK3P49761 638 aaKnown RBP13.64□□□□□ -0.23
VPS39-210ENST00000568357 GFRA1P56159 465 aa13.64□□□□□ -0.23
VPS39-210ENST00000568357 NME5P56597 212 aa13.64□□□□□ -0.23
VPS39-210ENST00000568357 UFM1P61960 85 aa13.64□□□□□ -0.23
VPS39-210ENST00000568357 CPEB4Q17RY0 729 aaKnown RBP eCLIP13.64□□□□□ -0.23
VPS39-210ENST00000568357 SPDYE7PQ495Y7 208 aa13.64□□□□□ -0.23
VPS39-210ENST00000568357 ACSF3Q4G176 576 aaPredicted RBP13.64□□□□□ -0.23
VPS39-210ENST00000568357 CCNJQ5T5M9 372 aa13.64□□□□□ -0.23
VPS39-210ENST00000568357 CDC73Q6P1J9 531 aa13.64□□□□□ -0.23
VPS39-210ENST00000568357 HDXQ7Z353 690 aa13.64□□□□□ -0.23
VPS39-210ENST00000568357 LIX1LQ8IVB5 337 aa13.64□□□□□ -0.23
VPS39-210ENST00000568357 COX18Q8N8Q8 333 aa13.64□□□□□ -0.23
VPS39-210ENST00000568357 OR4K17Q8NGC6 315 aa13.64□□□□□ -0.23
VPS39-210ENST00000568357 OR56A1Q8NGH5 318 aa13.64□□□□□ -0.23
VPS39-210ENST00000568357 OR5AK3PQ8NH89 298 aa13.64□□□□□ -0.23
VPS39-210ENST00000568357 CDS1Q92903 461 aa13.64□□□□□ -0.23
VPS39-210ENST00000568357 TESCQ96BS2 214 aa13.64□□□□□ -0.23
VPS39-210ENST00000568357 STACQ99469 402 aa13.64□□□□□ -0.23
VPS39-210ENST00000568357 SH3GL2Q99962 352 aa13.64□□□□□ -0.23
VPS39-210ENST00000568357 BTBD2Q9BX70 525 aa13.64□□□□□ -0.23
VPS39-210ENST00000568357 ACTRT3Q9BYD9 372 aa13.64□□□□□ -0.23
VPS39-210ENST00000568357 PIGUQ9H490 435 aa13.64□□□□□ -0.23
VPS39-210ENST00000568357 SDHAF3Q9NRP4 125 aa13.64□□□□□ -0.23
VPS39-210ENST00000568357 DUSP22Q9NRW4 184 aa13.64□□□□□ -0.23
VPS39-210ENST00000568357 GIN1Q9NXP7 522 aa13.64□□□□□ -0.23
VPS39-210ENST00000568357 CAMK2AQ9UQM7 478 aa13.64□□□□□ -0.23
VPS39-210ENST00000568357 RPH3AQ9Y2J0 694 aaPredicted RBP13.64□□□□□ -0.23
VPS39-210ENST00000568357 PCNX1Q96RV3 2341 aa13.64□□□□□ -0.23
VPS39-210ENST00000568357 PRSS51A0A1B0GVH4 220 aa13.63□□□□□ -0.23
VPS39-210ENST00000568357 NKX2-6A6NCS4 301 aa13.63□□□□□ -0.23
VPS39-210ENST00000568357 TRPC5OSA6NMA1 111 aa13.63□□□□□ -0.23
VPS39-210ENST00000568357 SLCO1B7G3V0H7 640 aa13.63□□□□□ -0.23
VPS39-210ENST00000568357 RNASET2O00584 256 aaKnown RBP13.63□□□□□ -0.23
VPS39-210ENST00000568357 ANGPTL1O95841 491 aa13.63□□□□□ -0.23
VPS39-210ENST00000568357 SNRPB2P08579 225 aaKnown RBP13.63□□□□□ -0.23
VPS39-210ENST00000568357 CPN1P15169 458 aa13.63□□□□□ -0.23
VPS39-210ENST00000568357 TBXA2RP21731 343 aa13.63□□□□□ -0.23
VPS39-210ENST00000568357 IL12AP29459 219 aa13.63□□□□□ -0.23
VPS39-210ENST00000568357 ZFP36L2P47974 494 aaKnown RBP13.63□□□□□ -0.23
VPS39-210ENST00000568357 DSCR4P56555 118 aaPredicted RBP13.63□□□□□ -0.23
VPS39-210ENST00000568357 B3GALT5-AS1P59052 145 aa13.63□□□□□ -0.23
VPS39-210ENST00000568357 POU6F2P78424 691 aaPredicted RBP13.63□□□□□ -0.23
VPS39-210ENST00000568357 SLC9B1Q4ZJI4 515 aa13.63□□□□□ -0.23
VPS39-210ENST00000568357 SPANXN4Q5MJ08 99 aa13.63□□□□□ -0.23
VPS39-210ENST00000568357 SPATA19Q7Z5L4 167 aa13.63□□□□□ -0.23
VPS39-210ENST00000568357 ANKRD46Q86W74 232 aa13.63□□□□□ -0.23
VPS39-210ENST00000568357 IFNEQ86WN2 208 aa13.63□□□□□ -0.23
VPS39-210ENST00000568357 PM20D2Q8IYS1 436 aa13.63□□□□□ -0.23
VPS39-210ENST00000568357 TNIP2Q8NFZ5 429 aa13.63□□□□□ -0.23
VPS39-210ENST00000568357 SFXN5Q8TD22 340 aa13.63□□□□□ -0.23
VPS39-210ENST00000568357 CHMP6Q96FZ7 201 aa13.63□□□□□ -0.23
VPS39-210ENST00000568357 TBL1XR1Q9BZK7 514 aa13.63□□□□□ -0.23
VPS39-210ENST00000568357 NEUROD4Q9HD90 331 aa13.63□□□□□ -0.23
VPS39-210ENST00000568357 AIG1Q9NVV5 245 aa13.63□□□□□ -0.23
VPS39-210ENST00000568357 DKKL1Q9UK85 242 aa13.63□□□□□ -0.23
VPS39-210ENST00000568357 FAF1Q9UNN5 650 aaPredicted RBP13.63□□□□□ -0.23
VPS39-210ENST00000568357 GPR45Q9Y5Y3 372 aa13.63□□□□□ -0.23
VPS39-210ENST00000568357 IGLV3-32A0A0A0MS00 114 aa13.62□□□□□ -0.23
VPS39-210ENST00000568357 FAM90A27PA6NNH2 459 aa13.62□□□□□ -0.23
VPS39-210ENST00000568357 ALG1L2C9J202 215 aa13.62□□□□□ -0.23
VPS39-210ENST00000568357 C9JVG2 144 aa13.62□□□□□ -0.23
VPS39-210ENST00000568357 DIAPH2O60879 1101 aa13.62□□□□□ -0.23
VPS39-210ENST00000568357 CPSF4O95639 269 aaKnown RBP13.62□□□□□ -0.23
VPS39-210ENST00000568357 OXSR1O95747 527 aaPredicted RBP13.62□□□□□ -0.23
VPS39-210ENST00000568357 NGFRP08138 427 aa13.62□□□□□ -0.23
VPS39-210ENST00000568357 LHX2P50458 406 aa13.62□□□□□ -0.23
VPS39-210ENST00000568357 RPS26P62854 115 aaKnown RBP13.62□□□□□ -0.23
VPS39-210ENST00000568357 SRYQ05066 204 aa13.62□□□□□ -0.23
VPS39-210ENST00000568357 TFF3Q07654 80 aa13.62□□□□□ -0.23
VPS39-210ENST00000568357 C17orf67Q0P5P2 114 aa13.62□□□□□ -0.23
VPS39-210ENST00000568357 FAM174BQ3ZCQ3 159 aa13.62□□□□□ -0.23
VPS39-210ENST00000568357 RIPPLY2Q5TAB7 128 aa13.62□□□□□ -0.23
VPS39-210ENST00000568357 ANXA8L1Q5VT79 327 aa13.62□□□□□ -0.23
VPS39-210ENST00000568357 C6orf120Q7Z4R8 191 aa13.62□□□□□ -0.23
VPS39-210ENST00000568357 NAXEQ8NCW5 288 aa13.62□□□□□ -0.23
VPS39-210ENST00000568357 OR5D16Q8NGK9 328 aa13.62□□□□□ -0.23
VPS39-210ENST00000568357 OR4A15Q8NGL6 344 aa13.62□□□□□ -0.23
VPS39-210ENST00000568357 PIWIL2Q8TC59 973 aaKnown RBP13.62□□□□□ -0.23
VPS39-210ENST00000568357 ZPLD1Q8TCW7 415 aa13.62□□□□□ -0.23
VPS39-210ENST00000568357 ADAMTS15Q8TE58 950 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms