RNA–Protein interactions for RNA: ENST00000568239.1

SMG1-215, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 1 (best)

Gene SMG1, Length 2,978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-215ENST00000568239 FAM86C2PA6NEL3 165 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 EFCAB7A8K855 629 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 SLC1A7O00341 560 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 BCAS1O75363 584 aaPredicted RBP6.54□□□□□ -1.36
SMG1-215ENST00000568239 ADAP00813 363 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 IGKV1D-16P01601 117 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 THBS1P07996 1170 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 IGFBP1P08833 259 aaPredicted RBP6.54□□□□□ -1.36
SMG1-215ENST00000568239 CT45A8P0DMV1 189 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 CT45A9P0DMV2 189 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 HPGDP15428 266 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 MAP3K8P41279 467 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 ESRRGP62508 458 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 EEF1A1P68104 462 aaKnown RBP6.54□□□□□ -1.36
SMG1-215ENST00000568239 PROX2Q3B8N5 592 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 CT45A2Q5DJT8 189 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 RBM48Q5RL73 367 aaKnown RBP6.54□□□□□ -1.36
SMG1-215ENST00000568239 RHBDD2Q6NTF9 364 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 PGBD2Q6P3X8 592 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 LANCL3Q6ZV70 420 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 KCTD8Q6ZWB6 473 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 RANBP3LQ86VV4 465 aaPredicted RBP6.54□□□□□ -1.36
SMG1-215ENST00000568239 CCDC71Q8IV32 467 aaPredicted RBP6.54□□□□□ -1.36
SMG1-215ENST00000568239 NKAIN4Q8IVV8 208 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 AMER2Q8N7J2 671 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 SLC2A12Q8TD20 617 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 HDAC2Q92769 488 aaKnown RBP6.54□□□□□ -1.36
SMG1-215ENST00000568239 POM121Q96HA1 1249 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 HRASLS5Q96KN8 279 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 ZNF578Q96N58 590 aaPredicted RBP6.54□□□□□ -1.36
SMG1-215ENST00000568239 LMF2Q9BU23 707 aaKnown RBP6.54□□□□□ -1.36
SMG1-215ENST00000568239 GABARAPL3Q9BY60 117 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 NRSN2Q9GZP1 204 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 VN1R1Q9GZP7 353 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 FAM192AQ9GZU8 254 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 MKKSQ9NPJ1 570 aaPredicted RBP6.54□□□□□ -1.36
SMG1-215ENST00000568239 MAN2C1Q9NTJ4 1040 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 SLC7A7Q9UM01 511 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 MGAT4BQ9UQ53 548 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 PCDHGA6Q9Y5G7 932 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 A0A087WUU8 490 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 LOC105378220A0A1B0GUY1 285 aaPredicted RBP6.54□□□□□ -1.36
SMG1-215ENST00000568239 POLR1CO15160 346 aaPredicted RBP6.54□□□□□ -1.36
SMG1-215ENST00000568239 FAM20BO75063 409 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 OXSR1O95747 527 aaPredicted RBP6.54□□□□□ -1.36
SMG1-215ENST00000568239 LDOC1O95751 146 aaPredicted RBP6.54□□□□□ -1.36
SMG1-215ENST00000568239 ANKRD34CP0C6C1 535 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 MSL3P1P0C860 447 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 MMP11P24347 488 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 CHMP24386 653 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 RORAP35398 523 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 HLCSP50747 726 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 RPS6KA3P51812 740 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 EFNA3P52797 238 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 CRISP1P54107 249 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 TUBA4AP68366 448 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 SQSTM1Q13501 440 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 MAD2L1BPQ15013 274 aaPredicted RBP6.54□□□□□ -1.36
SMG1-215ENST00000568239 TRAM2Q15035 370 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 NKAIN1Q4KMZ8 207 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 YOD1Q5VVQ6 348 aaPredicted RBP6.54□□□□□ -1.36
SMG1-215ENST00000568239 BROXQ5VW32 411 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 HLA-DQA1Q5Y7H0 255 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 ZNF770Q6IQ21 691 aaPredicted RBP6.54□□□□□ -1.36
SMG1-215ENST00000568239 ZER1Q7Z7L7 766 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 ENTHD1Q8IYW4 607 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 PRR22Q8IZ63 422 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 ZNF615Q8N8J6 731 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 GATSQ8NAP1 163 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 ZNF540Q8NDQ6 660 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 GRHL3Q8TE85 626 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 SLC41A3Q96GZ6 507 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 YTHDF1Q9BYJ9 559 aaKnown RBP6.54□□□□□ -1.36
SMG1-215ENST00000568239 POLR1BQ9H9Y6 1135 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 SCN3BQ9NY72 215 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 CNIH4Q9P003 139 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 ENOPH1Q9UHY7 261 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 SNX5Q9Y5X3 404 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 HEATR5AQ86XA9 2040 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 LNP1A1A4G5 178 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 CDHR4A6H8M9 788 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 D6RAR5 112 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 KPNA4O00629 521 aaPredicted RBP6.54□□□□□ -1.36
SMG1-215ENST00000568239 HEXBP07686 556 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 ZGLP1P0C6A0 271 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 OSMP13725 252 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 GGT2P36268 569 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 GRK6P43250 576 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 SLC37A1P57057 533 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 CDC42P60953 191 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 DCDP81605 110 aaKnown RBP6.54□□□□□ -1.36
SMG1-215ENST00000568239 RHAGQ02094 409 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 BIKQ13323 160 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 ELAVL1Q15717 326 aaKnown RBP6.54□□□□□ -1.36
SMG1-215ENST00000568239 ZNF528Q3MIS6 628 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 EXOSC6Q5RKV6 272 aaKnown RBP6.54□□□□□ -1.36
SMG1-215ENST00000568239 LAIR2Q6ISS4 152 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 MED25Q71SY5 747 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 GDF7Q7Z4P5 450 aa6.54□□□□□ -1.36
SMG1-215ENST00000568239 BCORP1Q8N888 145 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms