RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 EIF1AXP47813 144 aaKnown RBP9.19□□□□□ -0.94
SF3B3-204ENST00000563739 MAPK12P53778 367 aa9.19□□□□□ -0.94
SF3B3-204ENST00000563739 SLC7A5Q01650 507 aa9.19□□□□□ -0.94
SF3B3-204ENST00000563739 P2RY6Q15077 328 aa9.19□□□□□ -0.94
SF3B3-204ENST00000563739 PFKFB4Q16877 469 aa9.19□□□□□ -0.94
SF3B3-204ENST00000563739 TECRLQ5HYJ1 363 aa9.19□□□□□ -0.94
SF3B3-204ENST00000563739 TCHHL1Q5QJ38 904 aaPredicted RBP9.19□□□□□ -0.94
SF3B3-204ENST00000563739 CCNYL2Q5T2Q4 361 aa9.19□□□□□ -0.94
SF3B3-204ENST00000563739 UBAP2Q5T6F2 1119 aaKnown RBP9.19□□□□□ -0.94
SF3B3-204ENST00000563739 LGSNQ5TDP6 509 aa9.19□□□□□ -0.94
SF3B3-204ENST00000563739 FRG2Q64ET8 278 aa9.19□□□□□ -0.94
SF3B3-204ENST00000563739 ZDHHC24Q6UX98 284 aa9.19□□□□□ -0.94
SF3B3-204ENST00000563739 BEND4Q6ZU67 534 aa9.19□□□□□ -0.94
SF3B3-204ENST00000563739 CHMP1BQ7LBR1 199 aa9.19□□□□□ -0.94
SF3B3-204ENST00000563739 SLC44A2Q8IWA5 706 aaPredicted RBP9.19□□□□□ -0.94
SF3B3-204ENST00000563739 ZBED8Q8IZ13 594 aa9.19□□□□□ -0.94
SF3B3-204ENST00000563739 RHEBL1Q8TAI7 183 aa9.19□□□□□ -0.94
SF3B3-204ENST00000563739 UHMK1Q8TAS1 419 aaKnown RBP9.19□□□□□ -0.94
SF3B3-204ENST00000563739 RNF128Q8TEB7 428 aa9.19□□□□□ -0.94
SF3B3-204ENST00000563739 C10orf105Q8TEF2 133 aa9.19□□□□□ -0.94
SF3B3-204ENST00000563739 ABHD3Q8WU67 409 aa9.19□□□□□ -0.94
SF3B3-204ENST00000563739 GTPBP3Q969Y2 492 aaKnown RBP9.19□□□□□ -0.94
SF3B3-204ENST00000563739 FRG2BQ96QU4 278 aa9.19□□□□□ -0.94
SF3B3-204ENST00000563739 KCNK17Q96T54 332 aa9.19□□□□□ -0.94
SF3B3-204ENST00000563739 SOX7Q9BT81 388 aa9.19□□□□□ -0.94
SF3B3-204ENST00000563739 SRXN1Q9BYN0 137 aa9.19□□□□□ -0.94
SF3B3-204ENST00000563739 NOL11Q9H8H0 719 aaKnown RBP9.19□□□□□ -0.94
SF3B3-204ENST00000563739 E7EQL1 145 aa9.18□□□□□ -0.94
SF3B3-204ENST00000563739 PLOD3O60568 738 aa9.18□□□□□ -0.94
SF3B3-204ENST00000563739 LY6HO94772 140 aa9.18□□□□□ -0.94
SF3B3-204ENST00000563739 IL3P08700 152 aa9.18□□□□□ -0.94
SF3B3-204ENST00000563739 COL6A2P12110 1019 aa9.18□□□□□ -0.94
SF3B3-204ENST00000563739 IL12BP29460 328 aa9.18□□□□□ -0.94
SF3B3-204ENST00000563739 ALDH18A1P54886 795 aaKnown RBP9.18□□□□□ -0.94
SF3B3-204ENST00000563739 EEFSECP57772 596 aaKnown RBP9.18□□□□□ -0.94
SF3B3-204ENST00000563739 GUCY2DQ02846 1103 aa9.18□□□□□ -0.94
SF3B3-204ENST00000563739 CAV1Q03135 178 aa9.18□□□□□ -0.94
SF3B3-204ENST00000563739 TRADDQ15628 312 aa9.18□□□□□ -0.94
SF3B3-204ENST00000563739 ZNF239Q16600 458 aaKnown RBP9.18□□□□□ -0.94
SF3B3-204ENST00000563739 GLYR1Q49A26 553 aaPredicted RBP9.18□□□□□ -0.94
SF3B3-204ENST00000563739 GGTA1PQ4G0N0 100 aa9.18□□□□□ -0.94
SF3B3-204ENST00000563739 SFRP5Q5T4F7 317 aa9.18□□□□□ -0.94
SF3B3-204ENST00000563739 C6orf163Q5TEZ5 329 aa9.18□□□□□ -0.94
SF3B3-204ENST00000563739 ALKBH2Q6NS38 261 aa9.18□□□□□ -0.94
SF3B3-204ENST00000563739 LETMD1Q6P1Q0 360 aa9.18□□□□□ -0.94
SF3B3-204ENST00000563739 ZAR1Q86SH2 424 aa9.18□□□□□ -0.94
SF3B3-204ENST00000563739 LSRQ86X29 649 aaPredicted RBP9.18□□□□□ -0.94
SF3B3-204ENST00000563739 MEX3DQ86XN8 651 aaKnown RBP9.18□□□□□ -0.94
SF3B3-204ENST00000563739 CCDC116Q8IYX3 515 aa9.18□□□□□ -0.94
SF3B3-204ENST00000563739 PLD6Q8N2A8 252 aaKnown RBP9.18□□□□□ -0.94
SF3B3-204ENST00000563739 FBXO25Q8TCJ0 367 aa9.18□□□□□ -0.94
SF3B3-204ENST00000563739 TRPC4APQ8TEL6 797 aa9.18□□□□□ -0.94
SF3B3-204ENST00000563739 DUSP19Q8WTR2 217 aa9.18□□□□□ -0.94
SF3B3-204ENST00000563739 HS6ST2Q96MM7 605 aa9.18□□□□□ -0.94
SF3B3-204ENST00000563739 PRR14Q9BWN1 585 aa9.18□□□□□ -0.94
SF3B3-204ENST00000563739 CACNG6Q9BXT2 260 aa9.18□□□□□ -0.94
SF3B3-204ENST00000563739 BEX2Q9BXY8 128 aa9.18□□□□□ -0.94
SF3B3-204ENST00000563739 AMBRA1Q9C0C7 1298 aa9.18□□□□□ -0.94
SF3B3-204ENST00000563739 STMN4Q9H169 189 aaPredicted RBP9.18□□□□□ -0.94
SF3B3-204ENST00000563739 COQ10BQ9H8M1 238 aa9.18□□□□□ -0.94
SF3B3-204ENST00000563739 NMRAL1Q9HBL8 299 aa9.18□□□□□ -0.94
SF3B3-204ENST00000563739 FBXO34Q9NWN3 711 aa9.18□□□□□ -0.94
SF3B3-204ENST00000563739 FAM120CQ9NX05 1096 aaKnown RBP9.18□□□□□ -0.94
SF3B3-204ENST00000563739 ABCG2Q9UNQ0 655 aa9.18□□□□□ -0.94
SF3B3-204ENST00000563739 GXYLT2A0PJZ3 443 aa9.17□□□□□ -0.94
SF3B3-204ENST00000563739 LINC01387J3KSC0 135 aa9.17□□□□□ -0.94
SF3B3-204ENST00000563739 TNFSF11O14788 317 aa9.17□□□□□ -0.94
SF3B3-204ENST00000563739 EIF3HO15372 352 aaKnown RBP eCLIP9.17□□□□□ -0.942e-8■■■■□ 23.1
SF3B3-204ENST00000563739 GMFGO60234 142 aa9.17□□□□□ -0.94
SF3B3-204ENST00000563739 CLDN9O95484 217 aa9.17□□□□□ -0.94
SF3B3-204ENST00000563739 PDYNP01213 254 aa9.17□□□□□ -0.94
SF3B3-204ENST00000563739 ALDOAP04075 364 aaKnown RBP9.17□□□□□ -0.94
SF3B3-204ENST00000563739 RPS17P08708 135 aaKnown RBP9.17□□□□□ -0.94
SF3B3-204ENST00000563739 SBK3P0C264 359 aa9.17□□□□□ -0.94
SF3B3-204ENST00000563739 ZNF17P17021 662 aa9.17□□□□□ -0.94
SF3B3-204ENST00000563739 MAP3K8P41279 467 aa9.17□□□□□ -0.94
SF3B3-204ENST00000563739 PLTPP55058 493 aa9.17□□□□□ -0.94
SF3B3-204ENST00000563739 CDH11P55287 796 aa9.17□□□□□ -0.94
SF3B3-204ENST00000563739 RPS3AP61247 264 aaKnown RBP9.17□□□□□ -0.94
SF3B3-204ENST00000563739 PHEXP78562 749 aa9.17□□□□□ -0.94
SF3B3-204ENST00000563739 SLMAPQ14BN4 828 aa9.17□□□□□ -0.94
SF3B3-204ENST00000563739 PLPPR5Q32ZL2 321 aa9.17□□□□□ -0.94
SF3B3-204ENST00000563739 GRAMD1BQ3KR37 738 aa9.17□□□□□ -0.94
SF3B3-204ENST00000563739 GLE1Q53GS7 698 aaKnown RBP9.17□□□□□ -0.94
SF3B3-204ENST00000563739 FAM120AOSQ5T036 256 aa9.17□□□□□ -0.94
SF3B3-204ENST00000563739 CYS1Q717R9 158 aa9.17□□□□□ -0.94
SF3B3-204ENST00000563739 GTPBP8Q8N3Z3 284 aaPredicted RBP9.17□□□□□ -0.94
SF3B3-204ENST00000563739 C1orf52Q8N6N3 182 aaKnown RBP9.17□□□□□ -0.94
SF3B3-204ENST00000563739 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.17□□□□□ -0.94
SF3B3-204ENST00000563739 STEAP2Q8NFT2 490 aa9.17□□□□□ -0.94
SF3B3-204ENST00000563739 OR4F6Q8NGB9 312 aa9.17□□□□□ -0.94
SF3B3-204ENST00000563739 OR2V1Q8NHB1 315 aa9.17□□□□□ -0.94
SF3B3-204ENST00000563739 HOXB13Q92826 284 aaPredicted RBP9.17□□□□□ -0.94
SF3B3-204ENST00000563739 GFM2Q969S9 779 aaKnown RBP9.17□□□□□ -0.94
SF3B3-204ENST00000563739 MSI2Q96DH6 328 aaKnown RBP9.17□□□□□ -0.94
SF3B3-204ENST00000563739 ERP27Q96DN0 273 aa9.17□□□□□ -0.94
SF3B3-204ENST00000563739 RHNO1Q9BSD3 238 aa9.17□□□□□ -0.94
SF3B3-204ENST00000563739 POTEKPQ9BYX7 375 aa9.17□□□□□ -0.94
SF3B3-204ENST00000563739 ADAM19Q9H013 955 aa9.17□□□□□ -0.94
SF3B3-204ENST00000563739 TMEM185BQ9H7F4 350 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms