RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 FOXD4Q12950 439 aaPredicted RBP11.75□□□□□ -0.53
USP3-213ENST00000559711 MAD2L1BPQ15013 274 aaPredicted RBP11.75□□□□□ -0.53
USP3-213ENST00000559711 TRAM2Q15035 370 aa11.75□□□□□ -0.53
USP3-213ENST00000559711 ZNF141Q15928 474 aa11.75□□□□□ -0.53
USP3-213ENST00000559711 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.75□□□□□ -0.53
USP3-213ENST00000559711 ZSWIM7Q19AV6 140 aa11.75□□□□□ -0.53
USP3-213ENST00000559711 NKAIN1Q4KMZ8 207 aa11.75□□□□□ -0.53
USP3-213ENST00000559711 ENTPD8Q5MY95 495 aa11.75□□□□□ -0.53
USP3-213ENST00000559711 MRPL2Q5T653 305 aaKnown RBP11.75□□□□□ -0.53
USP3-213ENST00000559711 PHF19Q5T6S3 580 aa11.75□□□□□ -0.53
USP3-213ENST00000559711 ZNF385CQ66K41 422 aaPredicted RBP11.75□□□□□ -0.53
USP3-213ENST00000559711 PPP1R3BQ86XI6 285 aa11.75□□□□□ -0.53
USP3-213ENST00000559711 GRAMD2AQ8IUY3 354 aa11.75□□□□□ -0.53
USP3-213ENST00000559711 OR4K5Q8NGD3 323 aa11.75□□□□□ -0.53
USP3-213ENST00000559711 OR14A16Q8NHC5 309 aa11.75□□□□□ -0.53
USP3-213ENST00000559711 STT3BQ8TCJ2 826 aa11.75□□□□□ -0.53
USP3-213ENST00000559711 ZNF721Q8TF20 911 aa11.75□□□□□ -0.53
USP3-213ENST00000559711 SLC38A4Q969I6 547 aa11.75□□□□□ -0.53
USP3-213ENST00000559711 ITPAQ9BY32 194 aa11.75□□□□□ -0.53
USP3-213ENST00000559711 ADNPQ9H2P0 1102 aa11.75□□□□□ -0.53
USP3-213ENST00000559711 SEMA4GQ9NTN9 838 aa11.75□□□□□ -0.53
USP3-213ENST00000559711 CTSFQ9UBX1 484 aa11.75□□□□□ -0.53
USP3-213ENST00000559711 MKL2Q9ULH7 1088 aa11.75□□□□□ -0.53
USP3-213ENST00000559711 CBLCQ9ULV8 474 aa11.75□□□□□ -0.53
USP3-213ENST00000559711 MYO15AQ9UKN7 3530 aa11.74□□□□□ -0.53
USP3-213ENST00000559711 A0A087WUU8 490 aa11.74□□□□□ -0.53
USP3-213ENST00000559711 CPSF4LA6NMK7 179 aaKnown RBP11.74□□□□□ -0.53
USP3-213ENST00000559711 A8MUA0 341 aa11.74□□□□□ -0.53
USP3-213ENST00000559711 THY1P04216 161 aa11.74□□□□□ -0.53
USP3-213ENST00000559711 OSMP13725 252 aa11.74□□□□□ -0.53
USP3-213ENST00000559711 AGXTP21549 392 aa11.74□□□□□ -0.53
USP3-213ENST00000559711 CSTF2P33240 577 aaKnown RBP eCLIP11.74□□□□□ -0.53
USP3-213ENST00000559711 CRISP1P54107 249 aa11.74□□□□□ -0.53
USP3-213ENST00000559711 UGT2B15P54855 530 aa11.74□□□□□ -0.53
USP3-213ENST00000559711 PSMD4P55036 377 aaKnown RBP11.74□□□□□ -0.53
USP3-213ENST00000559711 GABARAPL2P60520 117 aa11.74□□□□□ -0.53
USP3-213ENST00000559711 DCDP81605 110 aaKnown RBP11.74□□□□□ -0.53
USP3-213ENST00000559711 HOXC5Q00444 222 aa11.74□□□□□ -0.53
USP3-213ENST00000559711 PLAURQ03405 335 aa11.74□□□□□ -0.53
USP3-213ENST00000559711 TARDBPQ13148 414 aaKnown RBP eCLIP11.74□□□□□ -0.53
USP3-213ENST00000559711 ILKQ13418 452 aa11.74□□□□□ -0.53
USP3-213ENST00000559711 IL11RAQ14626 422 aa11.74□□□□□ -0.53
USP3-213ENST00000559711 NADK2Q4G0N4 442 aa11.74□□□□□ -0.53
USP3-213ENST00000559711 C1orf94Q6P1W5 598 aa11.74□□□□□ -0.53
USP3-213ENST00000559711 Q6ZPB1 254 aaPredicted RBP11.74□□□□□ -0.53
USP3-213ENST00000559711 ZER1Q7Z7L7 766 aa11.74□□□□□ -0.53
USP3-213ENST00000559711 SATL1Q86VE3 508 aa11.74□□□□□ -0.53
USP3-213ENST00000559711 BCORP1Q8N888 145 aa11.74□□□□□ -0.53
USP3-213ENST00000559711 ZNF321PQ8N8H1 164 aa11.74□□□□□ -0.53
USP3-213ENST00000559711 SLC2A12Q8TD20 617 aa11.74□□□□□ -0.53
USP3-213ENST00000559711 DAZLQ92904 295 aaKnown RBP11.74□□□□□ -0.53
USP3-213ENST00000559711 SLC35B4Q969S0 331 aa11.74□□□□□ -0.53
USP3-213ENST00000559711 ART5Q96L15 291 aa11.74□□□□□ -0.53
USP3-213ENST00000559711 CTPS2Q9NRF8 586 aa11.74□□□□□ -0.53
USP3-213ENST00000559711 OCIAD1Q9NX40 245 aa11.74□□□□□ -0.53
USP3-213ENST00000559711 FTSJ1Q9UET6 329 aa11.74□□□□□ -0.53
USP3-213ENST00000559711 BLOC1S6Q9UL45 172 aa11.74□□□□□ -0.53
USP3-213ENST00000559711 SEC16AO15027 2179 aa11.74□□□□□ -0.53
USP3-213ENST00000559711 SCN2AQ99250 2005 aa11.73□□□□□ -0.53
USP3-213ENST00000559711 LNP1A1A4G5 178 aa11.73□□□□□ -0.53
USP3-213ENST00000559711 ZAR1LA6NP61 321 aa11.73□□□□□ -0.53
USP3-213ENST00000559711 SLC1A7O00341 560 aa11.73□□□□□ -0.53
USP3-213ENST00000559711 FLRT2O43155 660 aa11.73□□□□□ -0.53
USP3-213ENST00000559711 ANGPTL1O95841 491 aa11.73□□□□□ -0.53
USP3-213ENST00000559711 ZGLP1P0C6A0 271 aa11.73□□□□□ -0.53
USP3-213ENST00000559711 PRG2P13727 222 aa11.73□□□□□ -0.53
USP3-213ENST00000559711 MMP11P24347 488 aa11.73□□□□□ -0.53
USP3-213ENST00000559711 CHMP24386 653 aa11.73□□□□□ -0.53
USP3-213ENST00000559711 ATP12AP54707 1039 aa11.73□□□□□ -0.53
USP3-213ENST00000559711 ALDH6A1Q02252 535 aaKnown RBP11.73□□□□□ -0.53
USP3-213ENST00000559711 OCA2Q04671 838 aa11.73□□□□□ -0.53
USP3-213ENST00000559711 PTGES3Q15185 160 aaKnown RBP11.73□□□□□ -0.53
USP3-213ENST00000559711 DECR1Q16698 335 aa11.73□□□□□ -0.53
USP3-213ENST00000559711 PDZK1Q5T2W1 519 aa11.73□□□□□ -0.53
USP3-213ENST00000559711 ZNF773Q6PK81 442 aa11.73□□□□□ -0.53
USP3-213ENST00000559711 PRR23CQ6ZRP0 262 aa11.73□□□□□ -0.53
USP3-213ENST00000559711 PLEKHM3Q6ZWE6 761 aa11.73□□□□□ -0.53
USP3-213ENST00000559711 OVCH1Q7RTY7 1134 aa11.73□□□□□ -0.53
USP3-213ENST00000559711 B3GNT8Q7Z7M8 397 aa11.73□□□□□ -0.53
USP3-213ENST00000559711 RANBP3LQ86VV4 465 aaPredicted RBP11.73□□□□□ -0.53
USP3-213ENST00000559711 PRSS58Q8IYP2 241 aa11.73□□□□□ -0.53
USP3-213ENST00000559711 ENTHD1Q8IYW4 607 aa11.73□□□□□ -0.53
USP3-213ENST00000559711 BMPERQ8N8U9 685 aa11.73□□□□□ -0.53
USP3-213ENST00000559711 AGBL5Q8NDL9 886 aa11.73□□□□□ -0.53
USP3-213ENST00000559711 RHOXF1Q8NHV9 184 aa11.73□□□□□ -0.53
USP3-213ENST00000559711 CNIH3Q8TBE1 160 aa11.73□□□□□ -0.53
USP3-213ENST00000559711 OIT3Q8WWZ8 545 aa11.73□□□□□ -0.53
USP3-213ENST00000559711 ADIPOR1Q96A54 375 aa11.73□□□□□ -0.53
USP3-213ENST00000559711 CLIP3Q96DZ5 547 aa11.73□□□□□ -0.53
USP3-213ENST00000559711 SLC41A3Q96GZ6 507 aa11.73□□□□□ -0.53
USP3-213ENST00000559711 OR8D2Q9GZM6 311 aa11.73□□□□□ -0.53
USP3-213ENST00000559711 APMAPQ9HDC9 416 aa11.73□□□□□ -0.53
USP3-213ENST00000559711 ST6GALNAC1Q9NSC7 600 aaPredicted RBP11.73□□□□□ -0.53
USP3-213ENST00000559711 C14orf105Q9NVL8 296 aa11.73□□□□□ -0.53
USP3-213ENST00000559711 RNF6Q9Y252 685 aa11.73□□□□□ -0.53
USP3-213ENST00000559711 NTNG1Q9Y2I2 539 aa11.73□□□□□ -0.53
USP3-213ENST00000559711 OR10H1Q9Y4A9 318 aa11.73□□□□□ -0.53
USP3-213ENST00000559711 GPR179Q6PRD1 2367 aa11.73□□□□□ -0.53
USP3-213ENST00000559711 WDR87Q6ZQQ6 2873 aa11.73□□□□□ -0.53
USP3-213ENST00000559711 DMDP11532 3685 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms