RNA–Protein interactions for RNA: ENST00000558919.1

VPS13C-207, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 5

Gene VPS13C, Length 566 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-207ENST00000558919 BATF2Q8N1L9 274 aa2.34□□□□□ -2.03
VPS13C-207ENST00000558919 SPC24Q8NBT2 197 aa2.34□□□□□ -2.03
VPS13C-207ENST00000558919 NEK11Q8NG66 645 aa2.34□□□□□ -2.03
VPS13C-207ENST00000558919 ARNTL2Q8WYA1 636 aa2.34□□□□□ -2.03
VPS13C-207ENST00000558919 NEIL2Q969S2 332 aa2.34□□□□□ -2.03
VPS13C-207ENST00000558919 PSMG2Q969U7 264 aa2.34□□□□□ -2.03
VPS13C-207ENST00000558919 SLC25A36Q96CQ1 311 aa2.34□□□□□ -2.03
VPS13C-207ENST00000558919 HAVCR1Q96D42 359 aa2.34□□□□□ -2.03
VPS13C-207ENST00000558919 SLC35E1Q96K37 410 aa2.34□□□□□ -2.03
VPS13C-207ENST00000558919 SPATA13Q96N96 652 aa2.34□□□□□ -2.03
VPS13C-207ENST00000558919 ALDH8A1Q9H2A2 487 aaPredicted RBP2.34□□□□□ -2.03
VPS13C-207ENST00000558919 NANOGQ9H9S0 305 aa2.34□□□□□ -2.03
VPS13C-207ENST00000558919 SPRR3Q9UBC9 169 aa2.34□□□□□ -2.03
VPS13C-207ENST00000558919 SAMD4AQ9UPU9 718 aaKnown RBP2.34□□□□□ -2.03
VPS13C-207ENST00000558919 EIF3LQ9Y262 564 aaKnown RBP2.34□□□□□ -2.03
VPS13C-207ENST00000558919 PPIAL4AQ9Y536 164 aa2.34□□□□□ -2.03
VPS13C-207ENST00000558919 DYNC1LI1Q9Y6G9 523 aaKnown RBP2.34□□□□□ -2.03
VPS13C-207ENST00000558919 RLFQ13129 1914 aa2.34□□□□□ -2.04
VPS13C-207ENST00000558919 SAGE2PA6NJ88 616 aa2.33□□□□□ -2.04
VPS13C-207ENST00000558919 SCRG1O75711 98 aa2.33□□□□□ -2.04
VPS13C-207ENST00000558919 BBOX1O75936 387 aa2.33□□□□□ -2.04
VPS13C-207ENST00000558919 TIMP1P01033 207 aa2.33□□□□□ -2.04
VPS13C-207ENST00000558919 CCNA2P20248 432 aa2.33□□□□□ -2.04
VPS13C-207ENST00000558919 MRPS11P82912 194 aaKnown RBP2.33□□□□□ -2.04
VPS13C-207ENST00000558919 EGFEM1PQ0D2K5 195 aa2.33□□□□□ -2.04
VPS13C-207ENST00000558919 KARSQ15046 597 aaKnown RBP2.33□□□□□ -2.04
VPS13C-207ENST00000558919 LRRC36Q1X8D7 754 aa2.33□□□□□ -2.04
VPS13C-207ENST00000558919 CCDC184Q52MB2 194 aa2.33□□□□□ -2.04
VPS13C-207ENST00000558919 SERPINA9Q86WD7 417 aa2.33□□□□□ -2.04
VPS13C-207ENST00000558919 C17orf82Q86X59 251 aaPredicted RBP2.33□□□□□ -2.04
VPS13C-207ENST00000558919 ZNF100Q8IYN0 542 aa2.33□□□□□ -2.04
VPS13C-207ENST00000558919 CCNYQ8ND76 341 aa2.33□□□□□ -2.04
VPS13C-207ENST00000558919 URGCPQ8TCY9 931 aa2.33□□□□□ -2.04
VPS13C-207ENST00000558919 ADIPOR1Q96A54 375 aa2.33□□□□□ -2.04
VPS13C-207ENST00000558919 MARCH5Q9NX47 278 aa2.33□□□□□ -2.04
VPS13C-207ENST00000558919 ANKMY1Q9P2S6 941 aa2.33□□□□□ -2.04
VPS13C-207ENST00000558919 GMPPBQ9Y5P6 360 aa2.33□□□□□ -2.04
VPS13C-207ENST00000558919 LTBP1Q14766 1721 aa2.33□□□□□ -2.04
VPS13C-207ENST00000558919 IGHV7-81A0A0B4J1V7 117 aa2.32□□□□□ -2.04
VPS13C-207ENST00000558919 SLC9B1P1A6NJY1 282 aa2.32□□□□□ -2.04
VPS13C-207ENST00000558919 RSPH10B2B2RC85 870 aa2.32□□□□□ -2.04
VPS13C-207ENST00000558919 C19orf81C9J6K1 198 aa2.32□□□□□ -2.04
VPS13C-207ENST00000558919 H0YL77 283 aa2.32□□□□□ -2.04
VPS13C-207ENST00000558919 TRIM3O75382 744 aaPredicted RBP2.32□□□□□ -2.04
VPS13C-207ENST00000558919 CA11O75493 328 aa2.32□□□□□ -2.04
VPS13C-207ENST00000558919 RSPH10BP0C881 870 aa2.32□□□□□ -2.04
VPS13C-207ENST00000558919 BCKDHAP12694 445 aa2.32□□□□□ -2.04
VPS13C-207ENST00000558919 CCNE1P24864 410 aa2.32□□□□□ -2.04
VPS13C-207ENST00000558919 HTR5AP47898 357 aa2.32□□□□□ -2.04
VPS13C-207ENST00000558919 RPL29P47914 159 aaKnown RBP2.32□□□□□ -2.04
VPS13C-207ENST00000558919 DHPSP49366 369 aaPredicted RBP2.32□□□□□ -2.04
VPS13C-207ENST00000558919 CAV2P51636 162 aa2.32□□□□□ -2.04
VPS13C-207ENST00000558919 VLDLRP98155 873 aa2.32□□□□□ -2.04
VPS13C-207ENST00000558919 SNX1Q13596 522 aa2.32□□□□□ -2.04
VPS13C-207ENST00000558919 MPPED2Q15777 294 aa2.32□□□□□ -2.04
VPS13C-207ENST00000558919 TAF8Q7Z7C8 310 aa2.32□□□□□ -2.04
VPS13C-207ENST00000558919 NFAM1Q8NET5 270 aaPredicted RBP2.32□□□□□ -2.04
VPS13C-207ENST00000558919 OR2A12Q8NGT7 310 aa2.32□□□□□ -2.04
VPS13C-207ENST00000558919 OR9A4Q8NGU2 314 aa2.32□□□□□ -2.04
VPS13C-207ENST00000558919 TAF4BQ92750 862 aa2.32□□□□□ -2.04
VPS13C-207ENST00000558919 ATP6V0A1Q93050 837 aa2.32□□□□□ -2.04
VPS13C-207ENST00000558919 ELMO2Q96JJ3 720 aa2.32□□□□□ -2.04
VPS13C-207ENST00000558919 NOL4LQ96MY1 436 aaPredicted RBP2.32□□□□□ -2.04
VPS13C-207ENST00000558919 SLC25A39Q9BZJ4 359 aaPredicted RBP2.32□□□□□ -2.04
VPS13C-207ENST00000558919 OR51J1Q9H342 316 aa2.32□□□□□ -2.04
VPS13C-207ENST00000558919 GLIPR2Q9H4G4 154 aa2.32□□□□□ -2.04
VPS13C-207ENST00000558919 TRPV5Q9NQA5 729 aa2.32□□□□□ -2.04
VPS13C-207ENST00000558919 GDAP2Q9NXN4 497 aa2.32□□□□□ -2.04
VPS13C-207ENST00000558919 OR1A1Q9P1Q5 309 aa2.32□□□□□ -2.04
VPS13C-207ENST00000558919 MTRRQ9UBK8 725 aa2.32□□□□□ -2.04
VPS13C-207ENST00000558919 NEU3Q9UQ49 428 aa2.32□□□□□ -2.04
VPS13C-207ENST00000558919 SMC3Q9UQE7 1217 aa2.32□□□□□ -2.04
VPS13C-207ENST00000558919 STRAPQ9Y3F4 350 aaKnown RBP2.32□□□□□ -2.04
VPS13C-207ENST00000558919 ARHGAP21Q5T5U3 1957 aa2.31□□□□□ -2.04
VPS13C-207ENST00000558919 ZSCAN5BA6NJL1 495 aa2.31□□□□□ -2.04
VPS13C-207ENST00000558919 DDX39AO00148 427 aaKnown RBP2.31□□□□□ -2.04
VPS13C-207ENST00000558919 KERAO60938 352 aa2.31□□□□□ -2.04
VPS13C-207ENST00000558919 GPX5O75715 221 aa2.31□□□□□ -2.04
VPS13C-207ENST00000558919 RALAP11233 206 aa2.31□□□□□ -2.04
VPS13C-207ENST00000558919 PSG2P11465 335 aa2.31□□□□□ -2.04
VPS13C-207ENST00000558919 IGLL1P15814 213 aa2.31□□□□□ -2.04
VPS13C-207ENST00000558919 RPS2P15880 293 aaKnown RBP2.31□□□□□ -2.04
VPS13C-207ENST00000558919 H2AFXP16104 143 aaPredicted RBP2.31□□□□□ -2.04
VPS13C-207ENST00000558919 VDAC1P21796 283 aa2.31□□□□□ -2.04
VPS13C-207ENST00000558919 ADORA2BP29275 332 aa2.31□□□□□ -2.04
VPS13C-207ENST00000558919 PRDX2P32119 198 aa2.31□□□□□ -2.04
VPS13C-207ENST00000558919 STARP49675 285 aa2.31□□□□□ -2.04
VPS13C-207ENST00000558919 TLE4Q04727 773 aa2.31□□□□□ -2.04
VPS13C-207ENST00000558919 CBX3Q13185 183 aa2.31□□□□□ -2.04
VPS13C-207ENST00000558919 AANATQ16613 207 aa2.31□□□□□ -2.04
VPS13C-207ENST00000558919 FAM120AOSQ5T036 256 aa2.31□□□□□ -2.04
VPS13C-207ENST00000558919 IRGCQ6NXR0 463 aa2.31□□□□□ -2.04
VPS13C-207ENST00000558919 DNM1P46Q6ZS02 220 aa2.31□□□□□ -2.04
VPS13C-207ENST00000558919 Q7L0L9 218 aa2.31□□□□□ -2.04
VPS13C-207ENST00000558919 MIER3Q7Z3K6 550 aa2.31□□□□□ -2.04
VPS13C-207ENST00000558919 ZNF589Q86UQ0 364 aaPredicted RBP2.31□□□□□ -2.04
VPS13C-207ENST00000558919 ALLCQ8N6M5 410 aa2.31□□□□□ -2.04
VPS13C-207ENST00000558919 OR52E1Q8NGJ3 308 aa2.31□□□□□ -2.04
VPS13C-207ENST00000558919 FBXO30Q8TB52 745 aa2.31□□□□□ -2.04
VPS13C-207ENST00000558919 IL1F10Q8WWZ1 152 aa2.31□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms