RNA–Protein interactions for RNA: ENST00000556718.1

PRPF39-210, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 499 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-210ENST00000556718 ZNF841Q6ZN19 808 aa3.54□□□□□ -1.84
PRPF39-210ENST00000556718 TMUB2Q71RG4 321 aa3.54□□□□□ -1.84
PRPF39-210ENST00000556718 TMEM17Q86X19 198 aa3.54□□□□□ -1.84
PRPF39-210ENST00000556718 OTUD6BQ8N6M0 293 aa3.54□□□□□ -1.84
PRPF39-210ENST00000556718 ZSCAN4Q8NAM6 433 aaPredicted RBP3.54□□□□□ -1.84
PRPF39-210ENST00000556718 Q8NBF4 154 aa3.54□□□□□ -1.84
PRPF39-210ENST00000556718 ZNRF1Q8ND25 227 aa3.54□□□□□ -1.84
PRPF39-210ENST00000556718 ADIPOR1Q96A54 375 aa3.54□□□□□ -1.84
PRPF39-210ENST00000556718 LINC00479Q96M42 142 aa3.54□□□□□ -1.84
PRPF39-210ENST00000556718 PRICKLE1Q96MT3 831 aaPredicted RBP3.54□□□□□ -1.84
PRPF39-210ENST00000556718 OMDQ99983 421 aa3.54□□□□□ -1.84
PRPF39-210ENST00000556718 TRIM9Q9C026 710 aa3.54□□□□□ -1.84
PRPF39-210ENST00000556718 VCX2Q9H322 139 aa3.54□□□□□ -1.84
PRPF39-210ENST00000556718 CALHM2Q9HA72 323 aa3.54□□□□□ -1.84
PRPF39-210ENST00000556718 ADGRL4Q9HBW9 690 aa3.54□□□□□ -1.84
PRPF39-210ENST00000556718 SMPD3Q9NY59 655 aaPredicted RBP3.54□□□□□ -1.84
PRPF39-210ENST00000556718 CTNNA3Q9UI47 895 aa3.54□□□□□ -1.84
PRPF39-210ENST00000556718 MUTYHQ9UIF7 546 aa3.54□□□□□ -1.84
PRPF39-210ENST00000556718 ZNF346Q9UL40 294 aaKnown RBP3.54□□□□□ -1.84
PRPF39-210ENST00000556718 SPATA2Q9UM82 520 aa3.54□□□□□ -1.84
PRPF39-210ENST00000556718 RNF115Q9Y4L5 304 aa3.54□□□□□ -1.84
PRPF39-210ENST00000556718 MAD1L1Q9Y6D9 718 aa3.54□□□□□ -1.84
PRPF39-210ENST00000556718 ZMYM4Q5VZL5 1548 aa3.54□□□□□ -1.84
PRPF39-210ENST00000556718 UACAQ9BZF9 1416 aa3.53□□□□□ -1.84
PRPF39-210ENST00000556718 LRPPRCP42704 1394 aaKnown RBP3.53□□□□□ -1.84
PRPF39-210ENST00000556718 PLEKHH1Q9ULM0 1364 aa3.53□□□□□ -1.84
PRPF39-210ENST00000556718 ERICH4A6NGS2 130 aa3.53□□□□□ -1.84
PRPF39-210ENST00000556718 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP3.53□□□□□ -1.84
PRPF39-210ENST00000556718 CTAGE5O15320 804 aa3.53□□□□□ -1.84
PRPF39-210ENST00000556718 PPIHO43447 177 aaKnown RBP3.53□□□□□ -1.84
PRPF39-210ENST00000556718 DCXO43602 365 aa3.53□□□□□ -1.84
PRPF39-210ENST00000556718 OR1F1O43749 312 aa3.53□□□□□ -1.84
PRPF39-210ENST00000556718 NUDT21O43809 227 aaKnown RBP3.53□□□□□ -1.84
PRPF39-210ENST00000556718 NEMFO60524 1076 aa3.53□□□□□ -1.84
PRPF39-210ENST00000556718 BCKDHAP12694 445 aa3.53□□□□□ -1.84
PRPF39-210ENST00000556718 CAPN2P17655 700 aa3.53□□□□□ -1.84
PRPF39-210ENST00000556718 PAX7P23759 505 aa3.53□□□□□ -1.84
PRPF39-210ENST00000556718 RDXP35241 583 aaKnown RBP3.53□□□□□ -1.84
PRPF39-210ENST00000556718 IRX1P78414 480 aaPredicted RBP3.53□□□□□ -1.84
PRPF39-210ENST00000556718 ACY1Q03154 408 aa3.53□□□□□ -1.84
PRPF39-210ENST00000556718 ZNF85Q03923 595 aa3.53□□□□□ -1.84
PRPF39-210ENST00000556718 ZMYND11Q15326 602 aa3.53□□□□□ -1.84
PRPF39-210ENST00000556718 MAJINQ3KP22 176 aa3.53□□□□□ -1.84
PRPF39-210ENST00000556718 FILIP1LQ4L180 1135 aa3.53□□□□□ -1.84
PRPF39-210ENST00000556718 C2CD6Q53TS8 623 aa3.53□□□□□ -1.84
PRPF39-210ENST00000556718 DCST2Q5T1A1 773 aa3.53□□□□□ -1.84
PRPF39-210ENST00000556718 LCE3AQ5TA76 89 aa3.53□□□□□ -1.84
PRPF39-210ENST00000556718 TTC23Q5W5X9 447 aa3.53□□□□□ -1.84
PRPF39-210ENST00000556718 FAAP20Q6NZ36 180 aa3.53□□□□□ -1.84
PRPF39-210ENST00000556718 HACD2Q6Y1H2 254 aa3.53□□□□□ -1.84
PRPF39-210ENST00000556718 ZNF497Q6ZNH5 498 aa3.53□□□□□ -1.84
PRPF39-210ENST00000556718 ANKRD37Q7Z713 158 aa3.53□□□□□ -1.84
PRPF39-210ENST00000556718 LRRC49Q8IUZ0 686 aa3.53□□□□□ -1.84
PRPF39-210ENST00000556718 ZCCHC7Q8N3Z6 543 aaKnown RBP3.53□□□□□ -1.84
PRPF39-210ENST00000556718 EIF1ADQ8N9N8 165 aaKnown RBP3.53□□□□□ -1.84
PRPF39-210ENST00000556718 SYT14Q8NB59 555 aa3.53□□□□□ -1.84
PRPF39-210ENST00000556718 OR2T3Q8NH03 318 aa3.53□□□□□ -1.84
PRPF39-210ENST00000556718 OSTF1Q92882 214 aa3.53□□□□□ -1.84
PRPF39-210ENST00000556718 ITFG2Q969R8 447 aa3.53□□□□□ -1.84
PRPF39-210ENST00000556718 ZNF597Q96LX8 424 aa3.53□□□□□ -1.84
PRPF39-210ENST00000556718 CASD1Q96PB1 797 aa3.53□□□□□ -1.84
PRPF39-210ENST00000556718 PSMB7Q99436 277 aa3.53□□□□□ -1.84
PRPF39-210ENST00000556718 ZBTB18Q99592 522 aa3.53□□□□□ -1.84
PRPF39-210ENST00000556718 SLC25A51Q9H1U9 297 aa3.53□□□□□ -1.84
PRPF39-210ENST00000556718 JPT2Q9H910 190 aa3.53□□□□□ -1.84
PRPF39-210ENST00000556718 MRPL39Q9NYK5 338 aaKnown RBP3.53□□□□□ -1.84
PRPF39-210ENST00000556718 THAP10Q9P2Z0 257 aaPredicted RBP3.53□□□□□ -1.84
PRPF39-210ENST00000556718 CYTH4Q9UIA0 394 aa3.53□□□□□ -1.84
PRPF39-210ENST00000556718 CRLS1Q9UJA2 301 aa3.53□□□□□ -1.84
PRPF39-210ENST00000556718 RPH3ALQ9UNE2 315 aa3.53□□□□□ -1.84
PRPF39-210ENST00000556718 GSTK1Q9Y2Q3 226 aa3.53□□□□□ -1.84
PRPF39-210ENST00000556718 CCDC18Q5T9S5 1454 aa3.53□□□□□ -1.84
PRPF39-210ENST00000556718 PTCH1Q13635 1447 aa3.53□□□□□ -1.85
PRPF39-210ENST00000556718 MTUS2Q5JR59 1369 aa3.52□□□□□ -1.85
PRPF39-210ENST00000556718 SALL1Q9NSC2 1324 aa3.52□□□□□ -1.85
PRPF39-210ENST00000556718 ABCC8Q09428 1581 aa3.52□□□□□ -1.85
PRPF39-210ENST00000556718 MEX3AA1L020 520 aaKnown RBP3.52□□□□□ -1.85
PRPF39-210ENST00000556718 FAM74A7A6NL05 159 aa3.52□□□□□ -1.85
PRPF39-210ENST00000556718 TM9SF1O15321 606 aa3.52□□□□□ -1.85
PRPF39-210ENST00000556718 ZSCAN12O43309 604 aa3.52□□□□□ -1.85
PRPF39-210ENST00000556718 SCGNO76038 276 aa3.52□□□□□ -1.85
PRPF39-210ENST00000556718 CALB2P22676 271 aa3.52□□□□□ -1.85
PRPF39-210ENST00000556718 LMO2P25791 158 aa3.52□□□□□ -1.85
PRPF39-210ENST00000556718 MAGEA5P43359 124 aa3.52□□□□□ -1.85
PRPF39-210ENST00000556718 GNPDA1P46926 289 aa3.52□□□□□ -1.85
PRPF39-210ENST00000556718 ARHGDIAP52565 204 aa3.52□□□□□ -1.85
PRPF39-210ENST00000556718 PLA2G16P53816 162 aa3.52□□□□□ -1.85
PRPF39-210ENST00000556718 CSTF1Q05048 431 aaKnown RBP3.52□□□□□ -1.85
PRPF39-210ENST00000556718 NCBP1Q09161 790 aaKnown RBP3.52□□□□□ -1.85
PRPF39-210ENST00000556718 FCHO2Q0JRZ9 810 aa3.52□□□□□ -1.85
PRPF39-210ENST00000556718 ELAVL2Q12926 359 aaKnown RBP3.52□□□□□ -1.85
PRPF39-210ENST00000556718 ATXN7L3Q14CW9 347 aaPredicted RBP3.52□□□□□ -1.85
PRPF39-210ENST00000556718 SIX1Q15475 284 aaPredicted RBP3.52□□□□□ -1.85
PRPF39-210ENST00000556718 ZIC1Q15915 447 aa3.52□□□□□ -1.85
PRPF39-210ENST00000556718 CAMK4Q16566 473 aa3.52□□□□□ -1.85
PRPF39-210ENST00000556718 FAM74A3Q4VXF1 159 aa3.52□□□□□ -1.85
PRPF39-210ENST00000556718 VWA2Q5GFL6 755 aa3.52□□□□□ -1.85
PRPF39-210ENST00000556718 ATF7IP2Q5U623 682 aa3.52□□□□□ -1.85
PRPF39-210ENST00000556718 EMBQ6PCB8 327 aa3.52□□□□□ -1.85
PRPF39-210ENST00000556718 ADAMTSL5Q6ZMM2 481 aa3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms