RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 OR6C2Q9NZP2 312 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 DAPP1Q9UN19 280 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 MGAT4BQ9UQ53 548 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 ZBTB32Q9Y2Y4 487 aaPredicted RBP5.22□□□□□ -1.57
LIMA1-215ENST00000552823 N6AMT1Q9Y5N5 214 aa5.22□□□□□ -1.57
LIMA1-215ENST00000552823 HEATR5AQ86XA9 2040 aa5.21□□□□□ -1.57
LIMA1-215ENST00000552823 IGHV3-20A0A0C4DH32 117 aa5.21□□□□□ -1.57
LIMA1-215ENST00000552823 A0A1B0GVT2 93 aa5.21□□□□□ -1.57
LIMA1-215ENST00000552823 SERTM1A2A2V5 107 aa5.21□□□□□ -1.57
LIMA1-215ENST00000552823 TRIM64A6NGJ6 449 aa5.21□□□□□ -1.57
LIMA1-215ENST00000552823 ZAR1LA6NP61 321 aa5.21□□□□□ -1.57
LIMA1-215ENST00000552823 CDC42EP2O14613 210 aa5.21□□□□□ -1.57
LIMA1-215ENST00000552823 CASKO14936 926 aa5.21□□□□□ -1.57
LIMA1-215ENST00000552823 DSCR3O14972 297 aa5.21□□□□□ -1.57
LIMA1-215ENST00000552823 LGI1O95970 557 aa5.21□□□□□ -1.57
LIMA1-215ENST00000552823 HBQ1P09105 142 aa5.21□□□□□ -1.57
LIMA1-215ENST00000552823 ALOX5P09917 674 aa5.21□□□□□ -1.57
LIMA1-215ENST00000552823 PSMA1P25786 263 aaKnown RBP5.21□□□□□ -1.57
LIMA1-215ENST00000552823 SERPINB1P30740 379 aa5.21□□□□□ -1.57
LIMA1-215ENST00000552823 SDC2P34741 201 aa5.21□□□□□ -1.57
LIMA1-215ENST00000552823 RPL4P36578 427 aaKnown RBP5.21□□□□□ -1.57
LIMA1-215ENST00000552823 RPS27P42677 84 aaKnown RBP5.21□□□□□ -1.57
LIMA1-215ENST00000552823 RUNX1T1Q06455 604 aa5.21□□□□□ -1.57
LIMA1-215ENST00000552823 LARS2Q15031 903 aaKnown RBP5.21□□□□□ -1.57
LIMA1-215ENST00000552823 SSX1Q16384 188 aa5.21□□□□□ -1.57
LIMA1-215ENST00000552823 FLYWCH1Q4VC44 716 aa5.21□□□□□ -1.57
LIMA1-215ENST00000552823 TMEM35AQ53FP2 167 aa5.21□□□□□ -1.57
LIMA1-215ENST00000552823 SPANXN2Q5MJ10 180 aa5.21□□□□□ -1.57
LIMA1-215ENST00000552823 FAM27D1Q5T7N8 215 aa5.21□□□□□ -1.57
LIMA1-215ENST00000552823 LYPD4Q6UWN0 246 aa5.21□□□□□ -1.57
LIMA1-215ENST00000552823 RPTNQ6XPR3 784 aa5.21□□□□□ -1.57
LIMA1-215ENST00000552823 ZNF836Q6ZNA1 936 aa5.21□□□□□ -1.57
LIMA1-215ENST00000552823 C16orf47Q6ZP98 133 aaPredicted RBP5.21□□□□□ -1.57
LIMA1-215ENST00000552823 SLC46A3Q7Z3Q1 461 aa5.21□□□□□ -1.57
LIMA1-215ENST00000552823 GDF7Q7Z4P5 450 aa5.21□□□□□ -1.57
LIMA1-215ENST00000552823 UBE2Q1Q7Z7E8 422 aa5.21□□□□□ -1.57
LIMA1-215ENST00000552823 CAMKVQ8NCB2 501 aa5.21□□□□□ -1.57
LIMA1-215ENST00000552823 ANKK1Q8NFD2 765 aa5.21□□□□□ -1.57
LIMA1-215ENST00000552823 OR4K13Q8NH42 304 aa5.21□□□□□ -1.57
LIMA1-215ENST00000552823 DACT3Q96B18 629 aaPredicted RBP5.21□□□□□ -1.57
LIMA1-215ENST00000552823 METTL2AQ96IZ6 378 aaKnown RBP5.21□□□□□ -1.57
LIMA1-215ENST00000552823 GAL3ST1Q99999 423 aa5.21□□□□□ -1.57
LIMA1-215ENST00000552823 SPATA5L1Q9BVQ7 753 aa5.21□□□□□ -1.57
LIMA1-215ENST00000552823 ACTRT3Q9BYD9 372 aa5.21□□□□□ -1.57
LIMA1-215ENST00000552823 ANKHQ9HCJ1 492 aa5.21□□□□□ -1.57
LIMA1-215ENST00000552823 A4GALTQ9NPC4 353 aa5.21□□□□□ -1.57
LIMA1-215ENST00000552823 PTGFRNQ9P2B2 879 aa5.21□□□□□ -1.57
LIMA1-215ENST00000552823 REV1Q9UBZ9 1251 aa5.21□□□□□ -1.57
LIMA1-215ENST00000552823 FTSJ1Q9UET6 329 aa5.21□□□□□ -1.57
LIMA1-215ENST00000552823 ERVK-19Q9WJR5 959 aa5.21□□□□□ -1.57
LIMA1-215ENST00000552823 DTX4Q9Y2E6 619 aa5.21□□□□□ -1.57
LIMA1-215ENST00000552823 GPC6Q9Y625 555 aaPredicted RBP5.21□□□□□ -1.57
LIMA1-215ENST00000552823 SPACA6W5XKT8 324 aa5.21□□□□□ -1.57
LIMA1-215ENST00000552823 ANKRD61A6NGH8 418 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 C4orf47A7E2U8 309 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 CCRL2O00421 344 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 DOK2O60496 412 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 ADAP00813 363 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 DCNP07585 359 aaKnown RBP5.21□□□□□ -1.58
LIMA1-215ENST00000552823 HPGDP15428 266 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 BMP7P18075 431 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 MAGEB1P43366 347 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 TNFRSF4P43489 277 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 RPS15AP62244 130 aaKnown RBP5.21□□□□□ -1.58
LIMA1-215ENST00000552823 ABATP80404 500 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 CRYZQ08257 329 aaKnown RBP5.21□□□□□ -1.58
LIMA1-215ENST00000552823 C1DQ13901 141 aaKnown RBP5.21□□□□□ -1.58
LIMA1-215ENST00000552823 TRAM2Q15035 370 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 RAB30Q15771 203 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 SYT14P1Q58G82 188 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 FAM69BQ5VUD6 431 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 MFSD12Q6NUT3 480 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 SLC27A4Q6P1M0 643 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 RTL10Q7L3V2 364 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 ZNF554Q86TJ5 538 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 LAPTM4BQ86VI4 370 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 MARCH9Q86YJ5 346 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 CROCCP3Q8IVE0 287 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 LRRC17Q8N6Y2 441 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 DENND6BQ8NEG7 585 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 OR4Q3Q8NH05 313 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 AHCYL2Q96HN2 611 aaKnown RBP5.21□□□□□ -1.58
LIMA1-215ENST00000552823 DIRAS2Q96HU8 199 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 PITX2Q99697 317 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 DOK1Q99704 481 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 NKX3-1Q99801 234 aaPredicted RBP5.21□□□□□ -1.58
LIMA1-215ENST00000552823 MESP1Q9BRJ9 268 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 CDADC1Q9BWV3 514 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 RAB11FIP5Q9BXF6 653 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 GABARAPL3Q9BY60 117 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 SLC7A5P2Q9GIP4 190 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 SPRTNQ9H040 489 aaPredicted RBP5.21□□□□□ -1.58
LIMA1-215ENST00000552823 S1PR5Q9H228 398 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 THSD1Q9NS62 852 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 MAN2C1Q9NTJ4 1040 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 ACSS1Q9NUB1 689 aaPredicted RBP5.21□□□□□ -1.58
LIMA1-215ENST00000552823 DDX28Q9NUL7 540 aaKnown RBP5.21□□□□□ -1.58
LIMA1-215ENST00000552823 LRIT1Q9P2V4 623 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 GTF2A1LQ9UNN4 478 aa5.21□□□□□ -1.58
LIMA1-215ENST00000552823 GRIP1Q9Y3R0 1128 aa5.21□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms