RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 KIR2DS5Q14953 304 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 OPCMLQ14982 345 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 NECTIN1Q15223 517 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 ZNF630Q2M218 657 aaPredicted RBP3.4□□□□□ -1.87
LIMA1-208ENST00000551691 WSCD2Q2TBF2 565 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 HNRNPA1L2Q32P51 320 aaKnown RBP3.4□□□□□ -1.87
LIMA1-208ENST00000551691 PHLDA2Q53GA4 152 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 RAB6CQ53S08 254 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 FGD3Q5JSP0 725 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 C10orf120Q5SQS8 335 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 LDLRAP1Q5SW96 308 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 RIPPLY2Q5TAB7 128 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 PRAMEF7Q5VXH5 474 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 NKAIN2Q5VXU1 208 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 C8orf82Q6P1X6 216 aaPredicted RBP3.4□□□□□ -1.87
LIMA1-208ENST00000551691 DLEU7Q6UYE1 221 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 PTAR1Q7Z6K3 402 aaPredicted RBP3.4□□□□□ -1.87
LIMA1-208ENST00000551691 RTN4RL2Q86UN3 420 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 CLIP4Q8N3C7 705 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 PRSS35Q8N3Z0 413 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 BMPERQ8N8U9 685 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 AMER3Q8N944 861 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 IPMKQ8NFU5 416 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 OR1J1Q8NGS3 322 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 TMED6Q8WW62 240 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 ITLN2Q8WWU7 325 aaPredicted RBP3.4□□□□□ -1.87
LIMA1-208ENST00000551691 SELENOMQ8WWX9 145 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 IGFBPL1Q8WX77 278 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 COQ8BQ96D53 544 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 LGALS12Q96DT0 336 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 RASL10BQ96S79 203 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 TSPAN18Q96SJ8 248 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 SPAG8Q99932 426 aaPredicted RBP3.4□□□□□ -1.87
LIMA1-208ENST00000551691 NTPCRQ9BSD7 190 aaKnown RBP3.4□□□□□ -1.87
LIMA1-208ENST00000551691 TPPP3Q9BW30 176 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 MTMR12Q9C0I1 747 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 RAB6CQ9H0N0 254 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 UBQLN3Q9H347 655 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 LIME1Q9H400 295 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 DCLRE1BQ9H816 532 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 C10orf88Q9H8K7 445 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 FKRPQ9H9S5 495 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 UPF2Q9HAU5 1272 aaKnown RBP3.4□□□□□ -1.87
LIMA1-208ENST00000551691 APOBEC3GQ9HC16 384 aaKnown RBP3.4□□□□□ -1.87
LIMA1-208ENST00000551691 APMAPQ9HDC9 416 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 MRPL40Q9NQ50 206 aaKnown RBP3.4□□□□□ -1.87
LIMA1-208ENST00000551691 PNPLA3Q9NST1 481 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 SOHLH2Q9NX45 425 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 SLC39A1Q9NY26 324 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 IL37Q9NZH6 218 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 ZNF624Q9P2J8 865 aaPredicted RBP3.4□□□□□ -1.87
LIMA1-208ENST00000551691 MALT1Q9UDY8 824 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 FAM153AQ9UHL3 310 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 ZDHHC2Q9UIJ5 367 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 GGA2Q9UJY4 613 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 LSM7Q9UK45 103 aaKnown RBP3.4□□□□□ -1.87
LIMA1-208ENST00000551691 DNPEPQ9ULA0 475 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 CDH9Q9ULB4 789 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 SMC3Q9UQE7 1217 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 WDR37Q9Y2I8 494 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 CSNK1G3Q9Y6M4 447 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 U3KQV3 271 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 TLN2Q9Y4G6 2542 aa3.4□□□□□ -1.87
LIMA1-208ENST00000551691 AKAP6Q13023 2319 aa3.39□□□□□ -1.87
LIMA1-208ENST00000551691 IGHV5-10-1A0A0J9YXX1 117 aa3.39□□□□□ -1.87
LIMA1-208ENST00000551691 SPTY2D1-AS1A0A0U1RR47 76 aa3.39□□□□□ -1.87
LIMA1-208ENST00000551691 A8MU76 341 aa3.39□□□□□ -1.87
LIMA1-208ENST00000551691 C17orf105B2RV13 164 aa3.39□□□□□ -1.87
LIMA1-208ENST00000551691 O00370 1275 aa3.39□□□□□ -1.87
LIMA1-208ENST00000551691 E2F3O00716 465 aa3.39□□□□□ -1.87
LIMA1-208ENST00000551691 CHUKO15111 745 aa3.39□□□□□ -1.87
LIMA1-208ENST00000551691 LDB3O75112 727 aa3.39□□□□□ -1.87
LIMA1-208ENST00000551691 CLN5O75503 358 aa3.39□□□□□ -1.87
LIMA1-208ENST00000551691 PTBP3O95758 552 aaKnown RBP3.39□□□□□ -1.87
LIMA1-208ENST00000551691 LY6G6DO95868 133 aa3.39□□□□□ -1.87
LIMA1-208ENST00000551691 CHRNGP07510 517 aa3.39□□□□□ -1.87
LIMA1-208ENST00000551691 CALCBP10092 127 aa3.39□□□□□ -1.87
LIMA1-208ENST00000551691 PSG1P11464 419 aa3.39□□□□□ -1.87
LIMA1-208ENST00000551691 GM2AP17900 193 aa3.39□□□□□ -1.87
LIMA1-208ENST00000551691 TNNI3P19429 210 aa3.39□□□□□ -1.87
LIMA1-208ENST00000551691 CSKP41240 450 aa3.39□□□□□ -1.87
LIMA1-208ENST00000551691 SLC1A3P43003 542 aa3.39□□□□□ -1.87
LIMA1-208ENST00000551691 PITPNBP48739 271 aa3.39□□□□□ -1.87
LIMA1-208ENST00000551691 STK19P49842 368 aaPredicted RBP3.39□□□□□ -1.87
LIMA1-208ENST00000551691 CNN1P51911 297 aaKnown RBP3.39□□□□□ -1.87
LIMA1-208ENST00000551691 DVL1P1P54792 670 aaPredicted RBP3.39□□□□□ -1.87
LIMA1-208ENST00000551691 GEMP55040 296 aa3.39□□□□□ -1.87
LIMA1-208ENST00000551691 RPP38P78345 283 aaKnown RBP3.39□□□□□ -1.87
LIMA1-208ENST00000551691 Q0VFX4 171 aa3.39□□□□□ -1.87
LIMA1-208ENST00000551691 ZNF155Q12901 538 aaPredicted RBP3.39□□□□□ -1.87
LIMA1-208ENST00000551691 ART3Q13508 389 aa3.39□□□□□ -1.87
LIMA1-208ENST00000551691 RAPSNQ13702 412 aa3.39□□□□□ -1.87
LIMA1-208ENST00000551691 KLF9Q13886 244 aaPredicted RBP3.39□□□□□ -1.87
LIMA1-208ENST00000551691 CEBPEQ15744 281 aa3.39□□□□□ -1.87
LIMA1-208ENST00000551691 ETFDHQ16134 617 aa3.39□□□□□ -1.87
LIMA1-208ENST00000551691 VWA2Q5GFL6 755 aa3.39□□□□□ -1.87
LIMA1-208ENST00000551691 PDSS1Q5T2R2 415 aa3.39□□□□□ -1.87
LIMA1-208ENST00000551691 KCTD16Q68DU8 428 aa3.39□□□□□ -1.87
LIMA1-208ENST00000551691 ZNF626Q68DY1 528 aa3.39□□□□□ -1.87
LIMA1-208ENST00000551691 RFWD3Q6PCD5 774 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms