RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 CPMP14384 443 aa13.56□□□□□ -0.24
CLSTN3-216ENST00000545663 APEX1P27695 318 aaKnown RBP13.56□□□□□ -0.24
CLSTN3-216ENST00000545663 BSGP35613 385 aa13.56□□□□□ -0.24
CLSTN3-216ENST00000545663 MAGEA4P43358 317 aa13.56□□□□□ -0.24
CLSTN3-216ENST00000545663 EMDP50402 254 aa13.56□□□□□ -0.24
CLSTN3-216ENST00000545663 ARFIP2P53365 341 aa13.56□□□□□ -0.24
CLSTN3-216ENST00000545663 CORO7P57737 925 aa13.56□□□□□ -0.24
CLSTN3-216ENST00000545663 LAPTM5Q13571 262 aa13.56□□□□□ -0.24
CLSTN3-216ENST00000545663 PDK4Q16654 411 aa13.56□□□□□ -0.24
CLSTN3-216ENST00000545663 ZSWIM7Q19AV6 140 aa13.56□□□□□ -0.24
CLSTN3-216ENST00000545663 PRICKLE4Q2TBC4 344 aa13.56□□□□□ -0.24
CLSTN3-216ENST00000545663 TRMT12Q53H54 448 aaKnown RBP13.56□□□□□ -0.24
CLSTN3-216ENST00000545663 STEAP4Q687X5 459 aa13.56□□□□□ -0.24
CLSTN3-216ENST00000545663 OR52E8Q6IFG1 317 aa13.56□□□□□ -0.24
CLSTN3-216ENST00000545663 LARP4Q71RC2 724 aaKnown RBP eCLIP13.56□□□□□ -0.24
CLSTN3-216ENST00000545663 EXOC3L1Q86VI1 746 aa13.56□□□□□ -0.24
CLSTN3-216ENST00000545663 LAS2Q8IYD9 372 aa13.56□□□□□ -0.24
CLSTN3-216ENST00000545663 SVOPLQ8N434 492 aa13.56□□□□□ -0.24
CLSTN3-216ENST00000545663 GBP7Q8N8V2 638 aaPredicted RBP13.56□□□□□ -0.24
CLSTN3-216ENST00000545663 FBXO36Q8NEA4 188 aa13.56□□□□□ -0.24
CLSTN3-216ENST00000545663 OR4K14Q8NGD5 310 aa13.56□□□□□ -0.24
CLSTN3-216ENST00000545663 OR52R1Q8NGF1 315 aa13.56□□□□□ -0.24
CLSTN3-216ENST00000545663 MRPL24Q96A35 216 aaKnown RBP13.56□□□□□ -0.24
CLSTN3-216ENST00000545663 EFHD2Q96C19 240 aaPredicted RBP13.56□□□□□ -0.24
CLSTN3-216ENST00000545663 RADILQ96JH8 1075 aa13.56□□□□□ -0.24
CLSTN3-216ENST00000545663 ADGRG7Q96K78 797 aa13.56□□□□□ -0.24
CLSTN3-216ENST00000545663 NPAS1Q99742 590 aa13.56□□□□□ -0.24
CLSTN3-216ENST00000545663 ANKRA2Q9H9E1 313 aa13.56□□□□□ -0.24
CLSTN3-216ENST00000545663 WDR41Q9HAD4 459 aa13.56□□□□□ -0.24
CLSTN3-216ENST00000545663 GLRX2Q9NS18 164 aa13.56□□□□□ -0.24
CLSTN3-216ENST00000545663 LYARQ9NX58 379 aaKnown RBP13.56□□□□□ -0.24
CLSTN3-216ENST00000545663 MAT2BQ9NZL9 334 aa13.56□□□□□ -0.24
CLSTN3-216ENST00000545663 FLRT3Q9NZU0 649 aa13.56□□□□□ -0.24
CLSTN3-216ENST00000545663 ZNF639Q9UID6 485 aa13.56□□□□□ -0.24
CLSTN3-216ENST00000545663 MCTS1Q9ULC4 181 aaKnown RBP13.56□□□□□ -0.24
CLSTN3-216ENST00000545663 CHMP2BQ9UQN3 213 aa13.56□□□□□ -0.24
CLSTN3-216ENST00000545663 GPR55Q9Y2T6 319 aaPredicted RBP13.56□□□□□ -0.24
CLSTN3-216ENST00000545663 NPIPA5A0A0B4J1W7 369 aa13.55□□□□□ -0.24
CLSTN3-216ENST00000545663 NPIPA7E9PJI5 369 aa13.55□□□□□ -0.24
CLSTN3-216ENST00000545663 SYNGR4O95473 234 aa13.55□□□□□ -0.24
CLSTN3-216ENST00000545663 NPIPA8P0DM63 369 aa13.55□□□□□ -0.24
CLSTN3-216ENST00000545663 ZNF37AP17032 561 aaPredicted RBP13.55□□□□□ -0.24
CLSTN3-216ENST00000545663 STX2P32856 288 aa13.55□□□□□ -0.24
CLSTN3-216ENST00000545663 RBMXP38159 391 aaKnown RBP13.55□□□□□ -0.24
CLSTN3-216ENST00000545663 ZNF83P51522 516 aa13.55□□□□□ -0.24
CLSTN3-216ENST00000545663 MST1LQ2TV78 715 aa13.55□□□□□ -0.24
CLSTN3-216ENST00000545663 MSS51Q4VC12 460 aa13.55□□□□□ -0.24
CLSTN3-216ENST00000545663 C6orf163Q5TEZ5 329 aa13.55□□□□□ -0.24
CLSTN3-216ENST00000545663 WDR93Q6P2C0 686 aa13.55□□□□□ -0.24
CLSTN3-216ENST00000545663 MED27Q6P2C8 311 aa13.55□□□□□ -0.24
CLSTN3-216ENST00000545663 CYP20A1Q6UW02 462 aa13.55□□□□□ -0.24
CLSTN3-216ENST00000545663 GALNT7Q86SF2 657 aa13.55□□□□□ -0.24
CLSTN3-216ENST00000545663 TUSC5Q8IXB3 177 aa13.55□□□□□ -0.24
CLSTN3-216ENST00000545663 HUS1BQ8NHY5 278 aa13.55□□□□□ -0.24
CLSTN3-216ENST00000545663 ABHD3Q8WU67 409 aa13.55□□□□□ -0.24
CLSTN3-216ENST00000545663 C1GALT1C1Q96EU7 318 aa13.55□□□□□ -0.24
CLSTN3-216ENST00000545663 CERS2Q96G23 380 aa13.55□□□□□ -0.24
CLSTN3-216ENST00000545663 SNX18Q96RF0 628 aa13.55□□□□□ -0.24
CLSTN3-216ENST00000545663 MTERF1Q99551 399 aaKnown RBP13.55□□□□□ -0.24
CLSTN3-216ENST00000545663 CTNNAL1Q9UBT7 734 aa13.55□□□□□ -0.24
CLSTN3-216ENST00000545663 NFU1Q9UMS0 254 aa13.55□□□□□ -0.24
CLSTN3-216ENST00000545663 PMF1-BGLAPU3KQ54 211 aa13.55□□□□□ -0.24
CLSTN3-216ENST00000545663 TNFSF11O14788 317 aa13.54□□□□□ -0.24
CLSTN3-216ENST00000545663 STK16O75716 305 aa13.54□□□□□ -0.24
CLSTN3-216ENST00000545663 PORP16435 677 aaPredicted RBP13.54□□□□□ -0.24
CLSTN3-216ENST00000545663 GGT5P36269 586 aa13.54□□□□□ -0.24
CLSTN3-216ENST00000545663 CDH15P55291 814 aa13.54□□□□□ -0.24
CLSTN3-216ENST00000545663 CHRNB3Q05901 458 aa13.54□□□□□ -0.24
CLSTN3-216ENST00000545663 DUSP2Q05923 314 aa13.54□□□□□ -0.24
CLSTN3-216ENST00000545663 MGAT5Q09328 741 aa13.54□□□□□ -0.24
CLSTN3-216ENST00000545663 MAP4K2Q12851 820 aa13.54□□□□□ -0.24
CLSTN3-216ENST00000545663 NAB1Q13506 487 aa13.54□□□□□ -0.24
CLSTN3-216ENST00000545663 TGFBIQ15582 683 aa13.54□□□□□ -0.24
CLSTN3-216ENST00000545663 TRADDQ15628 312 aa13.54□□□□□ -0.24
CLSTN3-216ENST00000545663 TBCCQ15814 346 aa13.54□□□□□ -0.24
CLSTN3-216ENST00000545663 TMEM44Q2T9K0 475 aa13.54□□□□□ -0.24
CLSTN3-216ENST00000545663 C3orf62Q6ZUJ4 267 aa13.54□□□□□ -0.24
CLSTN3-216ENST00000545663 TRMT10CQ7L0Y3 403 aaKnown RBP13.54□□□□□ -0.24
CLSTN3-216ENST00000545663 SPATA6LQ8N4H0 392 aa13.54□□□□□ -0.24
CLSTN3-216ENST00000545663 OR4N2Q8NGD1 307 aa13.54□□□□□ -0.24
CLSTN3-216ENST00000545663 DUSP19Q8WTR2 217 aa13.54□□□□□ -0.24
CLSTN3-216ENST00000545663 MUCL1Q96DR8 90 aa13.54□□□□□ -0.24
CLSTN3-216ENST00000545663 CFAP36Q96G28 342 aa13.54□□□□□ -0.24
CLSTN3-216ENST00000545663 PKP2Q99959 881 aa13.54□□□□□ -0.24
CLSTN3-216ENST00000545663 DDX31Q9H8H2 851 aaKnown RBP13.54□□□□□ -0.24
CLSTN3-216ENST00000545663 ESM1Q9NQ30 184 aa13.54□□□□□ -0.24
CLSTN3-216ENST00000545663 PPANQ9NQ55 473 aaKnown RBP13.54□□□□□ -0.24
CLSTN3-216ENST00000545663 CORO1CQ9ULV4 474 aaPredicted RBP13.54□□□□□ -0.24
CLSTN3-216ENST00000545663 CFL2Q9Y281 166 aa13.54□□□□□ -0.24
CLSTN3-216ENST00000545663 LILRA1O75019 489 aa13.53□□□□□ -0.24
CLSTN3-216ENST00000545663 CT45A8P0DMV1 189 aa13.53□□□□□ -0.24
CLSTN3-216ENST00000545663 CT45A9P0DMV2 189 aa13.53□□□□□ -0.24
CLSTN3-216ENST00000545663 PCSK2P16519 638 aa13.53□□□□□ -0.24
CLSTN3-216ENST00000545663 EDNRAP25101 427 aa13.53□□□□□ -0.24
CLSTN3-216ENST00000545663 FEN1P39748 380 aaKnown RBP13.53□□□□□ -0.24
CLSTN3-216ENST00000545663 MRPS35P82673 323 aaKnown RBP13.53□□□□□ -0.24
CLSTN3-216ENST00000545663 EFR3AQ14156 821 aa13.53□□□□□ -0.24
CLSTN3-216ENST00000545663 LTB4RQ15722 352 aa13.53□□□□□ -0.24
CLSTN3-216ENST00000545663 CT45A2Q5DJT8 189 aa13.53□□□□□ -0.24
CLSTN3-216ENST00000545663 TMEM201Q5SNT2 666 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms