RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 S100A1P23297 94 aa14.05□□□□□ -0.16
USP28-214ENST00000545540 EFNB1P98172 346 aa14.05□□□□□ -0.16
USP28-214ENST00000545540 KHDRBS1Q07666 443 aaKnown RBP eCLIP14.05□□□□□ -0.16
USP28-214ENST00000545540 FAM109BQ6ICB4 259 aaPredicted RBP14.05□□□□□ -0.16
USP28-214ENST00000545540 ESPNLQ6ZVH7 1005 aa14.05□□□□□ -0.16
USP28-214ENST00000545540 KRT74Q7RTS7 529 aa14.05□□□□□ -0.16
USP28-214ENST00000545540 GRHL3Q8TE85 626 aa14.05□□□□□ -0.16
USP28-214ENST00000545540 FGF11Q92914 225 aa14.05□□□□□ -0.16
USP28-214ENST00000545540 RPP25Q9BUL9 199 aaKnown RBP14.05□□□□□ -0.16
USP28-214ENST00000545540 OR2B2Q9GZK3 357 aa14.05□□□□□ -0.16
USP28-214ENST00000545540 KIF26AQ9ULI4 1882 aaPredicted RBP14.05□□□□□ -0.16
USP28-214ENST00000545540 OR2W5A6NFC9 320 aa14.05□□□□□ -0.16
USP28-214ENST00000545540 H3BSH0 61 aa14.05□□□□□ -0.16
USP28-214ENST00000545540 SERPINI2O75830 405 aa14.05□□□□□ -0.16
USP28-214ENST00000545540 DDX6P26196 483 aaKnown RBP eCLIP14.05□□□□□ -0.16
USP28-214ENST00000545540 COX10Q12887 443 aa14.05□□□□□ -0.16
USP28-214ENST00000545540 CDK10Q15131 360 aa14.05□□□□□ -0.16
USP28-214ENST00000545540 WDR88Q6ZMY6 472 aa14.05□□□□□ -0.16
USP28-214ENST00000545540 QSOX2Q6ZRP7 698 aa14.05□□□□□ -0.16
USP28-214ENST00000545540 ZNF761Q86XN6 746 aaPredicted RBP14.05□□□□□ -0.16
USP28-214ENST00000545540 VWA5B2Q8N398 1253 aa14.05□□□□□ -0.16
USP28-214ENST00000545540 OR2L3Q8NG85 312 aa14.05□□□□□ -0.16
USP28-214ENST00000545540 DNAJA3Q96EY1 480 aa14.05□□□□□ -0.16
USP28-214ENST00000545540 ATF6BQ99941 703 aa14.05□□□□□ -0.16
USP28-214ENST00000545540 RBCK1Q9BYM8 510 aa14.05□□□□□ -0.16
USP28-214ENST00000545540 RNF32Q9H0A6 362 aa14.05□□□□□ -0.16
USP28-214ENST00000545540 MCUBQ9NWR8 336 aa14.05□□□□□ -0.16
USP28-214ENST00000545540 TRAV27A0A087WT01 109 aa14.04□□□□□ -0.16
USP28-214ENST00000545540 C1QTNF3-AMACRE9PGA6 284 aa14.04□□□□□ -0.16
USP28-214ENST00000545540 ELK1P19419 428 aa14.04□□□□□ -0.16
USP28-214ENST00000545540 CPN2P22792 545 aa14.04□□□□□ -0.16
USP28-214ENST00000545540 NOS3P29474 1203 aa14.04□□□□□ -0.16
USP28-214ENST00000545540 AGBL4Q5VU57 503 aa14.04□□□□□ -0.16
USP28-214ENST00000545540 NOXA1Q86UR1 476 aa14.04□□□□□ -0.16
USP28-214ENST00000545540 TIGD4Q8IY51 512 aa14.04□□□□□ -0.16
USP28-214ENST00000545540 ARL14Q8N4G2 192 aa14.04□□□□□ -0.16
USP28-214ENST00000545540 PIGXQ8TBF5 258 aa14.04□□□□□ -0.16
USP28-214ENST00000545540 DIO2Q92813 273 aa14.04□□□□□ -0.16
USP28-214ENST00000545540 SLC41A3Q96GZ6 507 aa14.04□□□□□ -0.16
USP28-214ENST00000545540 MSLNLQ96KJ4 702 aa14.04□□□□□ -0.16
USP28-214ENST00000545540 MKRN2Q9H000 416 aaKnown RBP14.04□□□□□ -0.16
USP28-214ENST00000545540 RPRD1BQ9NQG5 326 aaKnown RBP14.04□□□□□ -0.16
USP28-214ENST00000545540 MAFFQ9ULX9 164 aa14.04□□□□□ -0.16
USP28-214ENST00000545540 LIPT1Q9Y234 373 aa14.04□□□□□ -0.16
USP28-214ENST00000545540 RPN2P04844 631 aa14.04□□□□□ -0.16
USP28-214ENST00000545540 ACADMP11310 421 aa14.04□□□□□ -0.16
USP28-214ENST00000545540 PVRP15151 417 aa14.04□□□□□ -0.16
USP28-214ENST00000545540 MPIP34949 423 aa14.04□□□□□ -0.16
USP28-214ENST00000545540 RAB40BQ12829 278 aa14.04□□□□□ -0.16
USP28-214ENST00000545540 TRAM2Q15035 370 aa14.04□□□□□ -0.16
USP28-214ENST00000545540 ZNF628Q5EBL2 1059 aa14.04□□□□□ -0.16
USP28-214ENST00000545540 C3orf38Q5JPI3 329 aa14.04□□□□□ -0.16
USP28-214ENST00000545540 LCN1P1Q5VSP4 162 aa14.04□□□□□ -0.16
USP28-214ENST00000545540 TMEM91Q6ZNR0 172 aa14.04□□□□□ -0.16
USP28-214ENST00000545540 GDPGP1Q6ZNW5 385 aa14.04□□□□□ -0.16
USP28-214ENST00000545540 ZNF780BQ9Y6R6 833 aa14.04□□□□□ -0.16
USP28-214ENST00000545540 POM121BA6NF01 834 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 HMX3A6NHT5 357 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 PSMD9O00233 223 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 GNRH1P01148 92 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 MAP2K3P46734 347 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 E2F1Q01094 437 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 BNC1Q01954 994 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 TFF2Q03403 129 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 CST6Q15828 149 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 DUSP5Q16690 384 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 VASNQ6EMK4 673 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 OR5T3Q8NGG3 340 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 PATE1Q8WXA2 126 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 TSACCQ96A04 125 aaPredicted RBP14.03□□□□□ -0.16
USP28-214ENST00000545540 OTUB2Q96DC9 234 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 KXD1Q9BQD3 176 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 TNFRSF10DQ9UBN6 386 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 EXTL2Q9UBQ6 330 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 KIAA1549LQ6ZVL6 1849 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 TBC1D3DA0A087WVF3 549 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 TBC1D3IA0A087WXS9 549 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 TBC1D3EA0A087X179 549 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 TBC1D3KA0A087X1G2 549 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 TBC1D3FA6NER0 549 aaPredicted RBP14.03□□□□□ -0.16
USP28-214ENST00000545540 LRRC72A6NJI9 287 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 TBC1D3LB9A6J9 549 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 SURF4O15260 269 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 CLEC3AO75596 197 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 KAT7O95251 611 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 TBC1D3HP0C7X1 549 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 F3P13726 295 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 EVI2BP34910 448 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 AGFG1P52594 562 aaKnown RBP14.03□□□□□ -0.16
USP28-214ENST00000545540 ST3GAL3Q11203 375 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 TSPAN31Q12999 210 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 EXOSC7Q15024 291 aaKnown RBP14.03□□□□□ -0.16
USP28-214ENST00000545540 MINDY4Q4G0A6 757 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 GXYLT1Q4G148 440 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 TMEM52BQ4KMG9 183 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 TBC1D3GQ6DHY5 549 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 TBC1D3CQ6IPX1 549 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 MTSS1LQ765P7 747 aa14.03□□□□□ -0.16
USP28-214ENST00000545540 TBC1D3Q8IZP1 549 aaPredicted RBP14.03□□□□□ -0.16
USP28-214ENST00000545540 RFLNBQ8N5W9 214 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms