RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, humanhuman

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-209ENST00000540747 PPP4R1LQ9P1A2 415 aa6.53□□□□□ -1.36
YBX3-209ENST00000540747 CPSF2Q9P2I0 782 aaKnown RBP6.53□□□□□ -1.36
YBX3-209ENST00000540747 MCM8Q9UJA3 840 aa6.53□□□□□ -1.36
YBX3-209ENST00000540747 UTS2RQ9UKP6 389 aa6.53□□□□□ -1.36
YBX3-209ENST00000540747 PSME2Q9UL46 239 aa6.53□□□□□ -1.36
YBX3-209ENST00000540747 SLC12A4Q9UP95 1085 aa6.53□□□□□ -1.36
YBX3-209ENST00000540747 LAMP3Q9UQV4 416 aa6.53□□□□□ -1.36
YBX3-209ENST00000540747 RRP15Q9Y3B9 282 aaKnown RBP6.53□□□□□ -1.36
YBX3-209ENST00000540747 ZNF780BQ9Y6R6 833 aa6.53□□□□□ -1.36
YBX3-209ENST00000540747 ALPK2Q86TB3 2170 aa6.52□□□□□ -1.36
YBX3-209ENST00000540747 MEGF8Q7Z7M0 2845 aa6.52□□□□□ -1.37
YBX3-209ENST00000540747 A0A087WV62 115 aa6.52□□□□□ -1.37
YBX3-209ENST00000540747 C7orf72A4D263 438 aa6.52□□□□□ -1.37
YBX3-209ENST00000540747 MYO1GB0I1T2 1018 aa6.52□□□□□ -1.37
YBX3-209ENST00000540747 SHISA8B8ZZ34 492 aa6.52□□□□□ -1.37
YBX3-209ENST00000540747 H3BML4 177 aa6.52□□□□□ -1.37
YBX3-209ENST00000540747 IL33O95760 270 aa6.52□□□□□ -1.37
YBX3-209ENST00000540747 CD8AP01732 235 aa6.52□□□□□ -1.37
YBX3-209ENST00000540747 IL3P08700 152 aa6.52□□□□□ -1.37
YBX3-209ENST00000540747 HSD3B1P14060 373 aa6.52□□□□□ -1.37
YBX3-209ENST00000540747 CHN1P15882 459 aa6.52□□□□□ -1.37
YBX3-209ENST00000540747 ZNF17P17021 662 aa6.52□□□□□ -1.37
YBX3-209ENST00000540747 HSD3B2P26439 372 aa6.52□□□□□ -1.37
YBX3-209ENST00000540747 MAP3K8P41279 467 aa6.52□□□□□ -1.37
YBX3-209ENST00000540747 MAGEA4P43358 317 aa6.52□□□□□ -1.37
YBX3-209ENST00000540747 SERPINB8P50452 374 aa6.52□□□□□ -1.37
YBX3-209ENST00000540747 IFFO1Q0D2I5 559 aa6.52□□□□□ -1.37
YBX3-209ENST00000540747 CALCOCO2Q13137 446 aa6.52□□□□□ -1.37
YBX3-209ENST00000540747 VEZF1Q14119 521 aa6.52□□□□□ -1.37
YBX3-209ENST00000540747 TRADDQ15628 312 aa6.52□□□□□ -1.37
YBX3-209ENST00000540747 EXOC3L2Q2M3D2 409 aa6.52□□□□□ -1.37
YBX3-209ENST00000540747 PGGHGQ32M88 737 aa6.52□□□□□ -1.37
YBX3-209ENST00000540747 CYP27C1Q4G0S4 372 aa6.52□□□□□ -1.37
YBX3-209ENST00000540747 TTMPQ5BVD1 217 aa6.52□□□□□ -1.37
YBX3-209ENST00000540747 SGO1Q5FBB7 561 aa6.52□□□□□ -1.37
YBX3-209ENST00000540747 NCMAPQ5T1S8 102 aa6.52□□□□□ -1.37
YBX3-209ENST00000540747 UBAP2Q5T6F2 1119 aaKnown RBP6.52□□□□□ -1.37
YBX3-209ENST00000540747 AGBL2Q5U5Z8 902 aa6.52□□□□□ -1.37
YBX3-209ENST00000540747 GALNT18Q6P9A2 607 aa6.52□□□□□ -1.37
YBX3-209ENST00000540747 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.52□□□□□ -1.37
YBX3-209ENST00000540747 CROCCP2Q86T23 111 aa6.52□□□□□ -1.37
YBX3-209ENST00000540747 DTX2Q86UW9 622 aa6.52□□□□□ -1.37
YBX3-209ENST00000540747 SAMD14Q8IZD0 417 aaPredicted RBP6.52□□□□□ -1.37
YBX3-209ENST00000540747 GABRG1Q8N1C3 465 aa6.52□□□□□ -1.37
YBX3-209ENST00000540747 OR2L13Q8N349 312 aa6.52□□□□□ -1.37
YBX3-209ENST00000540747 GTPBP8Q8N3Z3 284 aaPredicted RBP6.52□□□□□ -1.37
YBX3-209ENST00000540747 UHMK1Q8TAS1 419 aaKnown RBP6.52□□□□□ -1.37
YBX3-209ENST00000540747 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.52□□□□□ -1.37
YBX3-209ENST00000540747 FBXO25Q8TCJ0 367 aa6.52□□□□□ -1.37
YBX3-209ENST00000540747 UBLCP1Q8WVY7 318 aaPredicted RBP6.52□□□□□ -1.37
YBX3-209ENST00000540747 TMEM158Q8WZ71 300 aa6.52□□□□□ -1.37
YBX3-209ENST00000540747 GFM2Q969S9 779 aaKnown RBP6.52□□□□□ -1.37
YBX3-209ENST00000540747 MTBPQ96DY7 904 aa6.52□□□□□ -1.37
YBX3-209ENST00000540747 PHF21BQ96EK2 531 aa6.52□□□□□ -1.37
YBX3-209ENST00000540747 ATP6V1G3Q96LB4 118 aa6.52□□□□□ -1.37
YBX3-209ENST00000540747 HBEGFQ99075 208 aa6.52□□□□□ -1.37
YBX3-209ENST00000540747 NPAS1Q99742 590 aa6.52□□□□□ -1.37
YBX3-209ENST00000540747 SHCBP1LQ9BZQ2 653 aa6.52□□□□□ -1.37
YBX3-209ENST00000540747 GRIP2Q9C0E4 1043 aa6.52□□□□□ -1.37
YBX3-209ENST00000540747 STMN4Q9H169 189 aaPredicted RBP6.52□□□□□ -1.37
YBX3-209ENST00000540747 ELOVL6Q9H5J4 265 aa6.52□□□□□ -1.37
YBX3-209ENST00000540747 LRTM1Q9HBL6 345 aa6.52□□□□□ -1.37
YBX3-209ENST00000540747 TMBIM4Q9HC24 238 aa6.52□□□□□ -1.37
YBX3-209ENST00000540747 SLC35C2Q9NQQ7 365 aa6.52□□□□□ -1.37
YBX3-209ENST00000540747 SIRT5Q9NXA8 310 aa6.52□□□□□ -1.37
YBX3-209ENST00000540747 XPR1Q9UBH6 696 aa6.52□□□□□ -1.37
YBX3-209ENST00000540747 VPS29Q9UBQ0 182 aa6.52□□□□□ -1.37
YBX3-209ENST00000540747 TMCO1Q9UM00 188 aa6.52□□□□□ -1.37
YBX3-209ENST00000540747 CLEC4AQ9UMR7 237 aa6.52□□□□□ -1.37
YBX3-209ENST00000540747 C19orf53Q9UNZ5 99 aaPredicted RBP6.52□□□□□ -1.37
YBX3-209ENST00000540747 GPR52Q9Y2T5 361 aa6.52□□□□□ -1.37
YBX3-209ENST00000540747 EMC9Q9Y3B6 208 aa6.52□□□□□ -1.37
YBX3-209ENST00000540747 MAGED1Q9Y5V3 778 aaPredicted RBP6.52□□□□□ -1.37
YBX3-209ENST00000540747 FREM1Q5H8C1 2179 aa6.52□□□□□ -1.37
YBX3-209ENST00000540747 MGAM2Q2M2H8 2515 aa6.51□□□□□ -1.37
YBX3-209ENST00000540747 GOLGA8QA0A0J9YX86 632 aa6.51□□□□□ -1.37
YBX3-209ENST00000540747 GOLGA8OA6NCC3 632 aa6.51□□□□□ -1.37
YBX3-209ENST00000540747 GOLGA8NF8WBI6 632 aa6.51□□□□□ -1.37
YBX3-209ENST00000540747 GOLGA8RI6L899 631 aa6.51□□□□□ -1.37
YBX3-209ENST00000540747 MANBAO00462 879 aa6.51□□□□□ -1.37
YBX3-209ENST00000540747 PHF1O43189 567 aaPredicted RBP6.51□□□□□ -1.37
YBX3-209ENST00000540747 NDUFS7O75251 213 aa6.51□□□□□ -1.37
YBX3-209ENST00000540747 OTCP00480 354 aa6.51□□□□□ -1.37
YBX3-209ENST00000540747 IFNA2P01563 188 aa6.51□□□□□ -1.37
YBX3-209ENST00000540747 IGKV1D-16P01601 117 aa6.51□□□□□ -1.37
YBX3-209ENST00000540747 NGFRP08138 427 aa6.51□□□□□ -1.37
YBX3-209ENST00000540747 RBP1P09455 135 aa6.51□□□□□ -1.37
YBX3-209ENST00000540747 IFI6P09912 130 aa6.51□□□□□ -1.37
YBX3-209ENST00000540747 FAM157CP0CG43 387 aa6.51□□□□□ -1.37
YBX3-209ENST00000540747 AGTR1P30556 359 aa6.51□□□□□ -1.37
YBX3-209ENST00000540747 IDUAP35475 653 aa6.51□□□□□ -1.37
YBX3-209ENST00000540747 KRT20P35900 424 aa6.51□□□□□ -1.37
YBX3-209ENST00000540747 ACVR1BP36896 505 aa6.51□□□□□ -1.37
YBX3-209ENST00000540747 HSD17B3P37058 310 aa6.51□□□□□ -1.37
YBX3-209ENST00000540747 ALDH9A1P49189 494 aa6.51□□□□□ -1.37
YBX3-209ENST00000540747 RPS3AP61247 264 aaKnown RBP6.51□□□□□ -1.37
YBX3-209ENST00000540747 PRR5P85299 388 aa6.51□□□□□ -1.37
YBX3-209ENST00000540747 CSTF3Q12996 717 aaKnown RBP6.51□□□□□ -1.37
YBX3-209ENST00000540747 STX5Q13190 355 aa6.51□□□□□ -1.37
YBX3-209ENST00000540747 KRTAP24-1Q3LI83 254 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms