RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 KAT2AQ92830 837 aa11.44□□□□□ -0.58
CLSTN3-208ENST00000538933 DAZLQ92904 295 aaKnown RBP11.44□□□□□ -0.58
CLSTN3-208ENST00000538933 PPWD1Q96BP3 646 aaKnown RBP11.44□□□□□ -0.58
CLSTN3-208ENST00000538933 ROPN1LQ96C74 230 aa11.44□□□□□ -0.58
CLSTN3-208ENST00000538933 LRRC58Q96CX6 371 aa11.44□□□□□ -0.58
CLSTN3-208ENST00000538933 ZNF681Q96N22 645 aa11.44□□□□□ -0.58
CLSTN3-208ENST00000538933 SLC35A5Q9BS91 424 aa11.44□□□□□ -0.58
CLSTN3-208ENST00000538933 ZCCHC3Q9NUD5 404 aaKnown RBP11.44□□□□□ -0.58
CLSTN3-208ENST00000538933 BCAP29Q9UHQ4 241 aa11.44□□□□□ -0.58
CLSTN3-208ENST00000538933 KIAA1549Q9HCM3 1950 aa11.43□□□□□ -0.58
CLSTN3-208ENST00000538933 C15orf38-AP3S2A0A0A6YYH1 394 aa11.43□□□□□ -0.58
CLSTN3-208ENST00000538933 RNF103-CHMP3A0A140T963 221 aa11.43□□□□□ -0.58
CLSTN3-208ENST00000538933 A0A1B0GVC2 190 aa11.43□□□□□ -0.58
CLSTN3-208ENST00000538933 OR14I1A6ND48 311 aa11.43□□□□□ -0.58
CLSTN3-208ENST00000538933 EVPLLA8MZ36 301 aa11.43□□□□□ -0.58
CLSTN3-208ENST00000538933 C17orf105B2RV13 164 aa11.43□□□□□ -0.58
CLSTN3-208ENST00000538933 GYG2O15488 501 aa11.43□□□□□ -0.58
CLSTN3-208ENST00000538933 EMC8O43402 210 aa11.43□□□□□ -0.58
CLSTN3-208ENST00000538933 COQ9O75208 318 aa11.43□□□□□ -0.58
CLSTN3-208ENST00000538933 KRT75O95678 551 aa11.43□□□□□ -0.58
CLSTN3-208ENST00000538933 NPPAP01160 153 aa11.43□□□□□ -0.58
CLSTN3-208ENST00000538933 PPIBP23284 216 aaKnown RBP11.43□□□□□ -0.58
CLSTN3-208ENST00000538933 UQCRC1P31930 480 aa11.43□□□□□ -0.58
CLSTN3-208ENST00000538933 MC3RP41968 323 aa11.43□□□□□ -0.58
CLSTN3-208ENST00000538933 FRKP42685 505 aaPredicted RBP11.43□□□□□ -0.58
CLSTN3-208ENST00000538933 CDKN2CP42773 168 aa11.43□□□□□ -0.58
CLSTN3-208ENST00000538933 CCT3P49368 545 aaKnown RBP11.43□□□□□ -0.58
CLSTN3-208ENST00000538933 CDK9P50750 372 aaKnown RBP11.43□□□□□ -0.58
CLSTN3-208ENST00000538933 GPR85P60893 370 aa11.43□□□□□ -0.58
CLSTN3-208ENST00000538933 DUSP2Q05923 314 aa11.43□□□□□ -0.58
CLSTN3-208ENST00000538933 BNIP1Q12981 228 aa11.43□□□□□ -0.58
CLSTN3-208ENST00000538933 TP53BP2Q13625 1128 aa11.43□□□□□ -0.58
CLSTN3-208ENST00000538933 ELAVL1Q15717 326 aaKnown RBP11.43□□□□□ -0.58
CLSTN3-208ENST00000538933 ZNF585AQ6P3V2 769 aa11.43□□□□□ -0.58
CLSTN3-208ENST00000538933 ZNF771Q7L3S4 317 aaPredicted RBP11.43□□□□□ -0.58
CLSTN3-208ENST00000538933 ARPINQ7Z6K5 226 aa11.43□□□□□ -0.58
CLSTN3-208ENST00000538933 VWA5B2Q8N398 1253 aa11.43□□□□□ -0.58
CLSTN3-208ENST00000538933 SIMC1Q8NDZ2 872 aa11.43□□□□□ -0.58
CLSTN3-208ENST00000538933 NFAM1Q8NET5 270 aaPredicted RBP11.43□□□□□ -0.58
CLSTN3-208ENST00000538933 OR56A1Q8NGH5 318 aa11.43□□□□□ -0.58
CLSTN3-208ENST00000538933 OR5AK3PQ8NH89 298 aa11.43□□□□□ -0.58
CLSTN3-208ENST00000538933 DOK4Q8TEW6 326 aa11.43□□□□□ -0.58
CLSTN3-208ENST00000538933 MOAP1Q96BY2 351 aa11.43□□□□□ -0.58
CLSTN3-208ENST00000538933 SH3GL1Q99961 368 aa11.43□□□□□ -0.58
CLSTN3-208ENST00000538933 RAD21L1Q9H4I0 556 aa11.43□□□□□ -0.58
CLSTN3-208ENST00000538933 SLC52A3Q9NQ40 469 aa11.43□□□□□ -0.58
CLSTN3-208ENST00000538933 COPS7AQ9UBW8 275 aa11.43□□□□□ -0.58
CLSTN3-208ENST00000538933 IGKV3D-11A0A0A0MRZ8 115 aa11.42□□□□□ -0.58
CLSTN3-208ENST00000538933 FIGNL2A6NMB9 653 aa11.42□□□□□ -0.58
CLSTN3-208ENST00000538933 TGFBR3LH3BV60 316 aa11.42□□□□□ -0.58
CLSTN3-208ENST00000538933 BCKDKO14874 412 aa11.42□□□□□ -0.58
CLSTN3-208ENST00000538933 SCN2BO60939 215 aa11.42□□□□□ -0.58
CLSTN3-208ENST00000538933 BCAS2O75934 225 aaPredicted RBP11.42□□□□□ -0.58
CLSTN3-208ENST00000538933 IGHG3P01860 377 aa11.42□□□□□ -0.58
CLSTN3-208ENST00000538933 EPXP11678 715 aa11.42□□□□□ -0.58
CLSTN3-208ENST00000538933 GALNSP34059 522 aa11.42□□□□□ -0.58
CLSTN3-208ENST00000538933 ANXA11P50995 505 aaKnown RBP11.42□□□□□ -0.58
CLSTN3-208ENST00000538933 MRPS35P82673 323 aaKnown RBP11.42□□□□□ -0.58
CLSTN3-208ENST00000538933 PPP2R2BQ00005 443 aa11.42□□□□□ -0.58
CLSTN3-208ENST00000538933 SLC25A3Q00325 362 aa11.42□□□□□ -0.58
CLSTN3-208ENST00000538933 CAPRIN1Q14444 709 aaKnown RBP11.42□□□□□ -0.58
CLSTN3-208ENST00000538933 PRICKLE4Q2TBC4 344 aa11.42□□□□□ -0.58
CLSTN3-208ENST00000538933 FBXL19-AS1Q494R0 122 aa11.42□□□□□ -0.58
CLSTN3-208ENST00000538933 DNAL1Q4LDG9 190 aa11.42□□□□□ -0.58
CLSTN3-208ENST00000538933 POMZP3Q6PJE2 187 aa11.42□□□□□ -0.58
CLSTN3-208ENST00000538933 FAM111BQ6SJ93 734 aa11.42□□□□□ -0.58
CLSTN3-208ENST00000538933 HACD2Q6Y1H2 254 aa11.42□□□□□ -0.58
CLSTN3-208ENST00000538933 WDR53Q7Z5U6 358 aaPredicted RBP11.42□□□□□ -0.58
CLSTN3-208ENST00000538933 RELL2Q8NC24 303 aaPredicted RBP11.42□□□□□ -0.58
CLSTN3-208ENST00000538933 NUP43Q8NFH3 380 aa11.42□□□□□ -0.58
CLSTN3-208ENST00000538933 SFXN5Q8TD22 340 aa11.42□□□□□ -0.58
CLSTN3-208ENST00000538933 ZNF675Q8TD23 568 aa11.42□□□□□ -0.58
CLSTN3-208ENST00000538933 JADE3Q92613 823 aa11.42□□□□□ -0.58
CLSTN3-208ENST00000538933 ELP4Q96EB1 424 aa11.42□□□□□ -0.58
CLSTN3-208ENST00000538933 SLC35G5Q96KT7 338 aa11.42□□□□□ -0.58
CLSTN3-208ENST00000538933 CGREF1Q99674 301 aa11.42□□□□□ -0.58
CLSTN3-208ENST00000538933 HOPXQ9BPY8 73 aaPredicted RBP11.42□□□□□ -0.58
CLSTN3-208ENST00000538933 THUMPD3Q9BV44 507 aaKnown RBP11.42□□□□□ -0.58
CLSTN3-208ENST00000538933 OR8D2Q9GZM6 311 aa11.42□□□□□ -0.58
CLSTN3-208ENST00000538933 PAIP1Q9H074 479 aaKnown RBP11.42□□□□□ -0.58
CLSTN3-208ENST00000538933 CXorf36Q9H7Y0 433 aa11.42□□□□□ -0.58
CLSTN3-208ENST00000538933 SERHLQ9NQF3 203 aa11.42□□□□□ -0.58
CLSTN3-208ENST00000538933 ADA2Q9NZK5 511 aa11.42□□□□□ -0.58
CLSTN3-208ENST00000538933 MAT2BQ9NZL9 334 aa11.42□□□□□ -0.58
CLSTN3-208ENST00000538933 CORO2BQ9UQ03 480 aa11.42□□□□□ -0.58
CLSTN3-208ENST00000538933 ERVK-19Q9WJR5 959 aa11.42□□□□□ -0.58
CLSTN3-208ENST00000538933 LIPGQ9Y5X9 500 aa11.42□□□□□ -0.58
CLSTN3-208ENST00000538933 NCKAP5O14513 1909 aa11.42□□□□□ -0.58
CLSTN3-208ENST00000538933 FREM3P0C091 2139 aa11.41□□□□□ -0.58
CLSTN3-208ENST00000538933 RNF212BA8MTL3 300 aa11.41□□□□□ -0.58
CLSTN3-208ENST00000538933 CLIC1O00299 241 aa11.41□□□□□ -0.58
CLSTN3-208ENST00000538933 ARHGEF9O43307 516 aa11.41□□□□□ -0.58
CLSTN3-208ENST00000538933 CRLF1O75462 422 aa11.41□□□□□ -0.58
CLSTN3-208ENST00000538933 GLSO94925 669 aaPredicted RBP11.41□□□□□ -0.58
CLSTN3-208ENST00000538933 ZCCHC18P0CG32 403 aa11.41□□□□□ -0.58
CLSTN3-208ENST00000538933 T-ENOLP0DO92 83 aa11.41□□□□□ -0.58
CLSTN3-208ENST00000538933 PRIM2P49643 509 aa11.41□□□□□ -0.58
CLSTN3-208ENST00000538933 PSME3P61289 254 aa11.41□□□□□ -0.58
CLSTN3-208ENST00000538933 PPIAP62937 165 aaKnown RBP11.41□□□□□ -0.58
CLSTN3-208ENST00000538933 MAP4K2Q12851 820 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms