RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 ERASQ7Z444 233 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 TMEM17Q86X19 198 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 UNC5CLQ8IV45 518 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 GCNT2Q8N0V5 402 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 ZNF491Q8N8L2 437 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 OR10T2Q8NGX3 314 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 CCDC26Q8TAB7 109 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 FLVCR1-AS1Q8TAF5 88 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 TRUB1Q8WWH5 349 aaKnown RBP2.07□□□□□ -2.08
CD44-238ENST00000534296 SIGLEC12Q96PQ1 595 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 GPA33Q99795 319 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 MAPKAP1Q9BPZ7 522 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 FEM1AQ9BSK4 669 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 HCAR1Q9BXC0 346 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 YTHDF1Q9BYJ9 559 aaKnown RBP2.07□□□□□ -2.08
CD44-238ENST00000534296 COMMD4Q9H0A8 199 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 DHX33Q9H6R0 707 aaKnown RBP2.07□□□□□ -2.08
CD44-238ENST00000534296 TAS2R3Q9NYW6 316 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 AIPL1Q9NZN9 384 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 SLC2A6Q9UGQ3 507 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 PRO0461Q9UI25 63 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 SNX6Q9UNH7 406 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 FOXJ3Q9UPW0 622 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 FLVCR1Q9Y5Y0 555 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 DDX49Q9Y6V7 483 aaKnown RBP2.07□□□□□ -2.08
CD44-238ENST00000534296 ZMYM6O95789 1325 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 KIF16BQ96L93 1317 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 CCDC7Q96M83 1385 aa2.07□□□□□ -2.08
CD44-238ENST00000534296 RGSL1A5PLK6 1076 aa2.06□□□□□ -2.08
CD44-238ENST00000534296 OR6C65A6NJZ3 312 aa2.06□□□□□ -2.08
CD44-238ENST00000534296 DHRS7CA6NNS2 312 aa2.06□□□□□ -2.08
CD44-238ENST00000534296 E9PLD3 99 aa2.06□□□□□ -2.08
CD44-238ENST00000534296 H0Y9J4 135 aa2.06□□□□□ -2.08
CD44-238ENST00000534296 TBL1XO60907 577 aa2.06□□□□□ -2.08
CD44-238ENST00000534296 ZNF253O75346 499 aa2.06□□□□□ -2.08
CD44-238ENST00000534296 DIRAS3O95661 229 aa2.06□□□□□ -2.08
CD44-238ENST00000534296 APBB3O95704 486 aa2.06□□□□□ -2.08
CD44-238ENST00000534296 HEXBP07686 556 aa2.06□□□□□ -2.08
CD44-238ENST00000534296 WNT2P09544 360 aa2.06□□□□□ -2.08
CD44-238ENST00000534296 ALPIP09923 528 aa2.06□□□□□ -2.08
CD44-238ENST00000534296 CCDC166P0CW27 439 aa2.06□□□□□ -2.08
CD44-238ENST00000534296 CT45A10P0DMU9 189 aa2.06□□□□□ -2.08
CD44-238ENST00000534296 PTBP1P26599 531 aaKnown RBP eCLIP2.06□□□□□ -2.08
CD44-238ENST00000534296 ANXA13P27216 316 aa2.06□□□□□ -2.08
CD44-238ENST00000534296 NTSP30990 170 aa2.06□□□□□ -2.08
CD44-238ENST00000534296 HPDP32754 393 aaPredicted RBP2.06□□□□□ -2.08
CD44-238ENST00000534296 UGT1A3P35503 534 aa2.06□□□□□ -2.08
CD44-238ENST00000534296 DLSTP36957 453 aa2.06□□□□□ -2.08
CD44-238ENST00000534296 SSR1P43307 286 aaKnown RBP2.06□□□□□ -2.08
CD44-238ENST00000534296 MAGEA5P43359 124 aa2.06□□□□□ -2.08
CD44-238ENST00000534296 RPS6P62753 249 aaKnown RBP2.06□□□□□ -2.08
CD44-238ENST00000534296 RPL32P62910 135 aaKnown RBP2.06□□□□□ -2.08
CD44-238ENST00000534296 OTUD4Q01804 1114 aaKnown RBP2.06□□□□□ -2.08
CD44-238ENST00000534296 SLC10A7Q0GE19 358 aa2.06□□□□□ -2.08
CD44-238ENST00000534296 ASAH1Q13510 395 aa2.06□□□□□ -2.08
CD44-238ENST00000534296 TFDP1Q14186 410 aa2.06□□□□□ -2.08
CD44-238ENST00000534296 CCL14Q16627 93 aa2.06□□□□□ -2.08
CD44-238ENST00000534296 TATDN3Q17R31 274 aa2.06□□□□□ -2.08
CD44-238ENST00000534296 C17orf58Q2M2W7 97 aa2.06□□□□□ -2.08
CD44-238ENST00000534296 KRTAP13-3Q3SY46 172 aa2.06□□□□□ -2.08
CD44-238ENST00000534296 RIPPLY2Q5TAB7 128 aa2.06□□□□□ -2.08
CD44-238ENST00000534296 GCNT7Q6ZNI0 430 aa2.06□□□□□ -2.08
CD44-238ENST00000534296 PRSS48Q7RTY5 328 aa2.06□□□□□ -2.08
CD44-238ENST00000534296 APTXQ7Z2E3 356 aaKnown RBP2.06□□□□□ -2.08
CD44-238ENST00000534296 ZNF573Q86YE8 665 aa2.06□□□□□ -2.08
CD44-238ENST00000534296 NAXDQ8IW45 347 aa2.06□□□□□ -2.08
CD44-238ENST00000534296 ZNF525Q8N782 197 aa2.06□□□□□ -2.08
CD44-238ENST00000534296 MINDY2Q8NBR6 621 aa2.06□□□□□ -2.08
CD44-238ENST00000534296 BADQ92934 168 aa2.06□□□□□ -2.08
CD44-238ENST00000534296 MCHR2Q969V1 340 aa2.06□□□□□ -2.08
CD44-238ENST00000534296 MYLPFQ96A32 169 aa2.06□□□□□ -2.08
CD44-238ENST00000534296 SYAP1Q96A49 352 aaPredicted RBP2.06□□□□□ -2.08
CD44-238ENST00000534296 SLC25A36Q96CQ1 311 aa2.06□□□□□ -2.08
CD44-238ENST00000534296 PIWIL1Q96J94 861 aaKnown RBP2.06□□□□□ -2.08
CD44-238ENST00000534296 MAGEB18Q96M61 343 aa2.06□□□□□ -2.08
CD44-238ENST00000534296 CASD1Q96PB1 797 aa2.06□□□□□ -2.08
CD44-238ENST00000534296 SLC30A2Q9BRI3 323 aa2.06□□□□□ -2.08
CD44-238ENST00000534296 TSSK1BQ9BXA7 367 aa2.06□□□□□ -2.08
CD44-238ENST00000534296 OPN3Q9H1Y3 402 aaPredicted RBP2.06□□□□□ -2.08
CD44-238ENST00000534296 ECT2Q9H8V3 914 aa2.06□□□□□ -2.08
CD44-238ENST00000534296 ABCB10Q9NRK6 738 aa2.06□□□□□ -2.08
CD44-238ENST00000534296 STARD5Q9NSY2 213 aa2.06□□□□□ -2.08
CD44-238ENST00000534296 AATFQ9NY61 560 aaKnown RBP eCLIP2.06□□□□□ -2.08
CD44-238ENST00000534296 ANAPC11Q9NYG5 84 aa2.06□□□□□ -2.08
CD44-238ENST00000534296 MRPL39Q9NYK5 338 aaKnown RBP2.06□□□□□ -2.08
CD44-238ENST00000534296 NYAP2Q9P242 653 aa2.06□□□□□ -2.08
CD44-238ENST00000534296 SH3BGRL2Q9UJC5 107 aa2.06□□□□□ -2.08
CD44-238ENST00000534296 RNF6Q9Y252 685 aa2.06□□□□□ -2.08
CD44-238ENST00000534296 KLHDC2Q9Y2U9 406 aa2.06□□□□□ -2.08
CD44-238ENST00000534296 GMPPBQ9Y5P6 360 aa2.06□□□□□ -2.08
CD44-238ENST00000534296 SPACA6W5XKT8 324 aa2.06□□□□□ -2.08
CD44-238ENST00000534296 USP6P35125 1406 aa2.06□□□□□ -2.08
CD44-238ENST00000534296 PPIAL4CA0A0B4J2A2 164 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 FAM74A7A6NL05 159 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 FAM220BPB1ANY3 271 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 F8WDY8 70 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP2.05□□□□□ -2.08
CD44-238ENST00000534296 SAP18O00422 153 aaKnown RBP2.05□□□□□ -2.08
CD44-238ENST00000534296 E2F3O00716 465 aa2.05□□□□□ -2.08
CD44-238ENST00000534296 ADAM12O43184 909 aa2.05□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms