RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 NDUFB5O43674 189 aa13.28□□□□□ -0.28
VPS28-215ENST00000531924 PSMG1O95456 288 aa13.28□□□□□ -0.28
VPS28-215ENST00000531924 IFI6P09912 130 aa13.28□□□□□ -0.28
VPS28-215ENST00000531924 NEFHP12036 1026 aa13.28□□□□□ -0.28
VPS28-215ENST00000531924 KRT4P19013 534 aa13.28□□□□□ -0.28
VPS28-215ENST00000531924 SUCLG1P53597 346 aaKnown RBP13.28□□□□□ -0.28
VPS28-215ENST00000531924 TPD52P55327 224 aaPredicted RBP13.28□□□□□ -0.28
VPS28-215ENST00000531924 CLDN15P56746 228 aa13.28□□□□□ -0.28
VPS28-215ENST00000531924 CLDN20P56880 219 aa13.28□□□□□ -0.28
VPS28-215ENST00000531924 NKX6-1P78426 367 aaPredicted RBP13.28□□□□□ -0.28
VPS28-215ENST00000531924 GRAMD1BQ3KR37 738 aa13.28□□□□□ -0.28
VPS28-215ENST00000531924 HOMEZQ8IX15 550 aa13.28□□□□□ -0.28
VPS28-215ENST00000531924 CDRT4Q8N9R6 151 aa13.28□□□□□ -0.28
VPS28-215ENST00000531924 CIDECQ96AQ7 238 aaPredicted RBP13.28□□□□□ -0.28
VPS28-215ENST00000531924 PIK3IP1Q96FE7 263 aa13.28□□□□□ -0.28
VPS28-215ENST00000531924 CHMP6Q96FZ7 201 aa13.28□□□□□ -0.28
VPS28-215ENST00000531924 EGLN2Q96KS0 407 aa13.28□□□□□ -0.28
VPS28-215ENST00000531924 WFIKKN1Q96NZ8 548 aa13.28□□□□□ -0.28
VPS28-215ENST00000531924 TSSK3Q96PN8 268 aa13.28□□□□□ -0.28
VPS28-215ENST00000531924 REEP4Q9H6H4 257 aa13.28□□□□□ -0.28
VPS28-215ENST00000531924 EMC9Q9Y3B6 208 aa13.28□□□□□ -0.28
VPS28-215ENST00000531924 DOCK7Q96N67 2140 aa13.28□□□□□ -0.28
VPS28-215ENST00000531924 MED12Q93074 2177 aa13.28□□□□□ -0.28
VPS28-215ENST00000531924 ZFHX3Q15911 3703 aa13.27□□□□□ -0.28
VPS28-215ENST00000531924 NIPBLQ6KC79 2804 aaeCLIP13.27□□□□□ -0.28
VPS28-215ENST00000531924 A0A087WZY1 265 aa13.27□□□□□ -0.29
VPS28-215ENST00000531924 B4DXG7 233 aa13.27□□□□□ -0.29
VPS28-215ENST00000531924 EIF1AYO14602 144 aaKnown RBP13.27□□□□□ -0.29
VPS28-215ENST00000531924 CTIFO43310 598 aaKnown RBP13.27□□□□□ -0.29
VPS28-215ENST00000531924 SMPD2O60906 423 aa13.27□□□□□ -0.29
VPS28-215ENST00000531924 SHBGP04278 402 aa13.27□□□□□ -0.29
VPS28-215ENST00000531924 CD53P19397 219 aa13.27□□□□□ -0.29
VPS28-215ENST00000531924 PRPH2P23942 346 aa13.27□□□□□ -0.29
VPS28-215ENST00000531924 ADSLP30566 484 aaPredicted RBP13.27□□□□□ -0.29
VPS28-215ENST00000531924 UGT2B10P36537 528 aa13.27□□□□□ -0.29
VPS28-215ENST00000531924 KIR2DL2P43627 348 aaPredicted RBP13.27□□□□□ -0.29
VPS28-215ENST00000531924 EIF1AXP47813 144 aaKnown RBP13.27□□□□□ -0.29
VPS28-215ENST00000531924 PCYT1AP49585 367 aa13.27□□□□□ -0.29
VPS28-215ENST00000531924 CTBP2P56545 445 aa13.27□□□□□ -0.29
VPS28-215ENST00000531924 RPL38P63173 70 aaKnown RBP13.27□□□□□ -0.29
VPS28-215ENST00000531924 PRR5P85299 388 aa13.27□□□□□ -0.29
VPS28-215ENST00000531924 EXOC3L2Q2M3D2 409 aa13.27□□□□□ -0.29
VPS28-215ENST00000531924 KRTAP21-3Q3LHN1 58 aa13.27□□□□□ -0.29
VPS28-215ENST00000531924 EXOC3L1Q86VI1 746 aa13.27□□□□□ -0.29
VPS28-215ENST00000531924 P3H2Q8IVL5 708 aa13.27□□□□□ -0.29
VPS28-215ENST00000531924 C10orf107Q8IVU9 208 aa13.27□□□□□ -0.29
VPS28-215ENST00000531924 WDR75Q8IWA0 830 aaKnown RBP13.27□□□□□ -0.29
VPS28-215ENST00000531924 DDIASQ8IXT1 998 aa13.27□□□□□ -0.29
VPS28-215ENST00000531924 C4orf33Q8N1A6 199 aa13.27□□□□□ -0.29
VPS28-215ENST00000531924 WFDC11Q8NEX6 87 aa13.27□□□□□ -0.29
VPS28-215ENST00000531924 NUP43Q8NFH3 380 aa13.27□□□□□ -0.29
VPS28-215ENST00000531924 JADE3Q92613 823 aa13.27□□□□□ -0.29
VPS28-215ENST00000531924 PIGTQ969N2 578 aa13.27□□□□□ -0.29
VPS28-215ENST00000531924 ZC3HAV1LQ96H79 300 aaKnown RBP13.27□□□□□ -0.29
VPS28-215ENST00000531924 POM121Q96HA1 1249 aa13.27□□□□□ -0.29
VPS28-215ENST00000531924 CCT7Q99832 543 aa13.27□□□□□ -0.29
VPS28-215ENST00000531924 TRMOQ9BU70 441 aa13.27□□□□□ -0.29
VPS28-215ENST00000531924 KLHL4Q9C0H6 718 aa13.27□□□□□ -0.29
VPS28-215ENST00000531924 RNF122Q9H9V4 155 aa13.27□□□□□ -0.29
VPS28-215ENST00000531924 FANCFQ9NPI8 374 aa13.27□□□□□ -0.29
VPS28-215ENST00000531924 VDAC3Q9Y277 283 aa13.27□□□□□ -0.29
VPS28-215ENST00000531924 PTGDR2Q9Y5Y4 395 aa13.27□□□□□ -0.29
VPS28-215ENST00000531924 IGLV3-32A0A0A0MS00 114 aa13.26□□□□□ -0.29
VPS28-215ENST00000531924 TRIM13O60858 407 aa13.26□□□□□ -0.29
VPS28-215ENST00000531924 MPDZO75970 2070 aa13.26□□□□□ -0.29
VPS28-215ENST00000531924 SYNGR4O95473 234 aa13.26□□□□□ -0.29
VPS28-215ENST00000531924 ALOX5P09917 674 aa13.26□□□□□ -0.29
VPS28-215ENST00000531924 LINC00032P0C843 101 aa13.26□□□□□ -0.29
VPS28-215ENST00000531924 CD8BP10966 210 aa13.26□□□□□ -0.29
VPS28-215ENST00000531924 FPR1P21462 350 aa13.26□□□□□ -0.29
VPS28-215ENST00000531924 ME2P23368 584 aa13.26□□□□□ -0.29
VPS28-215ENST00000531924 ASMTP46597 345 aa13.26□□□□□ -0.29
VPS28-215ENST00000531924 SERPINB4P48594 390 aa13.26□□□□□ -0.29
VPS28-215ENST00000531924 ZNF41P51814 821 aaPredicted RBP13.26□□□□□ -0.29
VPS28-215ENST00000531924 OCRLQ01968 901 aa13.26□□□□□ -0.29
VPS28-215ENST00000531924 KIAA0040Q15053 153 aa13.26□□□□□ -0.29
VPS28-215ENST00000531924 GALNTL6Q49A17 601 aa13.26□□□□□ -0.29
VPS28-215ENST00000531924 SHEQ5VZ18 495 aa13.26□□□□□ -0.29
VPS28-215ENST00000531924 ZNF474Q6S9Z5 364 aaPredicted RBP13.26□□□□□ -0.29
VPS28-215ENST00000531924 SH2D5Q6ZV89 423 aa13.26□□□□□ -0.29
VPS28-215ENST00000531924 FAM214BQ7L5A3 538 aa13.26□□□□□ -0.29
VPS28-215ENST00000531924 R3HCC1LQ7Z5L2 792 aaKnown RBP13.26□□□□□ -0.29
VPS28-215ENST00000531924 GALNT10Q86SR1 603 aa13.26□□□□□ -0.29
VPS28-215ENST00000531924 BIVMQ86UB2 503 aa13.26□□□□□ -0.29
VPS28-215ENST00000531924 TDRPQ86YL5 185 aa13.26□□□□□ -0.29
VPS28-215ENST00000531924 COX18Q8N8Q8 333 aa13.26□□□□□ -0.29
VPS28-215ENST00000531924 ZNF610Q8N9Z0 462 aa13.26□□□□□ -0.29
VPS28-215ENST00000531924 OR6Y1Q8NGX8 325 aa13.26□□□□□ -0.29
VPS28-215ENST00000531924 CLHC1Q8NHS4 586 aa13.26□□□□□ -0.29
VPS28-215ENST00000531924 FBXO30Q8TB52 745 aa13.26□□□□□ -0.29
VPS28-215ENST00000531924 MS4A4EQ96PG1 132 aa13.26□□□□□ -0.29
VPS28-215ENST00000531924 RTN4RQ9BZR6 473 aa13.26□□□□□ -0.29
VPS28-215ENST00000531924 C12orf65Q9H3J6 166 aaKnown RBP13.26□□□□□ -0.29
VPS28-215ENST00000531924 GSX1Q9H4S2 264 aaPredicted RBP13.26□□□□□ -0.29
VPS28-215ENST00000531924 UBTD1Q9HAC8 227 aa13.26□□□□□ -0.29
VPS28-215ENST00000531924 EML4Q9HC35 981 aaKnown RBP13.26□□□□□ -0.29
VPS28-215ENST00000531924 TNFRSF12AQ9NP84 129 aa13.26□□□□□ -0.29
VPS28-215ENST00000531924 PAQR5Q9NXK6 330 aaPredicted RBP13.26□□□□□ -0.29
VPS28-215ENST00000531924 MCTS1Q9ULC4 181 aaKnown RBP13.26□□□□□ -0.29
VPS28-215ENST00000531924 TMED5Q9Y3A6 229 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms