RNA–Protein interactions for RNA: ENST00000531727.5

CPSF1-207, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3 BASIC

Gene CPSF1, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-207ENST00000531727 GPR151Q8TDV0 419 aa15.16■□□□□ 0.02
CPSF1-207ENST00000531727 PIK3R3Q92569 461 aa15.16■□□□□ 0.02
CPSF1-207ENST00000531727 ZBED6CLQ96FA7 236 aaPredicted RBP15.16■□□□□ 0.02
CPSF1-207ENST00000531727 PGM2Q96G03 612 aa15.16■□□□□ 0.02
CPSF1-207ENST00000531727 TRMOQ9BU70 441 aa15.16■□□□□ 0.02
CPSF1-207ENST00000531727 GATA5Q9BWX5 397 aaPredicted RBP15.16■□□□□ 0.02
CPSF1-207ENST00000531727 TUBB1Q9H4B7 451 aa15.16■□□□□ 0.02
CPSF1-207ENST00000531727 RNF122Q9H9V4 155 aa15.16■□□□□ 0.02
CPSF1-207ENST00000531727 DLL4Q9NR61 685 aa15.16■□□□□ 0.02
CPSF1-207ENST00000531727 NTMQ9P121 344 aa15.16■□□□□ 0.02
CPSF1-207ENST00000531727 EIF3LQ9Y262 564 aaKnown RBP15.16■□□□□ 0.02
CPSF1-207ENST00000531727 ZNF175Q9Y473 711 aa15.16■□□□□ 0.02
CPSF1-207ENST00000531727 AP4B1Q9Y6B7 739 aa15.16■□□□□ 0.02
CPSF1-207ENST00000531727 AKAP6Q13023 2319 aa15.16■□□□□ 0.02
CPSF1-207ENST00000531727 EMC8O43402 210 aa15.15■□□□□ 0.02
CPSF1-207ENST00000531727 AKAP10O43572 662 aa15.15■□□□□ 0.02
CPSF1-207ENST00000531727 CD79BP40259 229 aa15.15■□□□□ 0.02
CPSF1-207ENST00000531727 FRKP42685 505 aaPredicted RBP15.15■□□□□ 0.02
CPSF1-207ENST00000531727 PRKAG1P54619 331 aa15.15■□□□□ 0.02
CPSF1-207ENST00000531727 RPS3AP61247 264 aaKnown RBP15.15■□□□□ 0.02
CPSF1-207ENST00000531727 OCRLQ01968 901 aa15.15■□□□□ 0.02
CPSF1-207ENST00000531727 PDE7AQ13946 482 aa15.15■□□□□ 0.02
CPSF1-207ENST00000531727 TMEM44Q2T9K0 475 aa15.15■□□□□ 0.02
CPSF1-207ENST00000531727 KRTAP21-3Q3LHN1 58 aa15.15■□□□□ 0.02
CPSF1-207ENST00000531727 ZNF474Q6S9Z5 364 aaPredicted RBP15.15■□□□□ 0.02
CPSF1-207ENST00000531727 METTL25Q8N6Q8 603 aa15.15■□□□□ 0.02
CPSF1-207ENST00000531727 CDRT4Q8N9R6 151 aa15.15■□□□□ 0.02
CPSF1-207ENST00000531727 NUP43Q8NFH3 380 aa15.15■□□□□ 0.02
CPSF1-207ENST00000531727 FNDC9Q8TBE3 224 aa15.15■□□□□ 0.02
CPSF1-207ENST00000531727 PPCDCQ96CD2 204 aa15.15■□□□□ 0.02
CPSF1-207ENST00000531727 TSSK3Q96PN8 268 aa15.15■□□□□ 0.02
CPSF1-207ENST00000531727 FAM111AQ96PZ2 611 aa15.15■□□□□ 0.02
CPSF1-207ENST00000531727 IQCGQ9H095 443 aaKnown RBP15.15■□□□□ 0.02
CPSF1-207ENST00000531727 OPN3Q9H1Y3 402 aaPredicted RBP15.15■□□□□ 0.02
CPSF1-207ENST00000531727 HHATLQ9HCP6 504 aa15.15■□□□□ 0.02
CPSF1-207ENST00000531727 TMED5Q9Y3A6 229 aa15.15■□□□□ 0.02
CPSF1-207ENST00000531727 FIS1Q9Y3D6 152 aa15.15■□□□□ 0.02
CPSF1-207ENST00000531727 PCNX3Q9H6A9 2034 aa15.15■□□□□ 0.02
CPSF1-207ENST00000531727 MAP1AP78559 2803 aaPredicted RBP15.14■□□□□ 0.01
CPSF1-207ENST00000531727 GIMAP1-GIMAP5A0A087WTJ2 511 aa15.14■□□□□ 0.01
CPSF1-207ENST00000531727 LSM1O15116 133 aaKnown RBP15.14■□□□□ 0.01
CPSF1-207ENST00000531727 TRIM13O60858 407 aa15.14■□□□□ 0.01
CPSF1-207ENST00000531727 CHEK2O96017 543 aa15.14■□□□□ 0.01
CPSF1-207ENST00000531727 CGAP01215 116 aa15.14■□□□□ 0.01
CPSF1-207ENST00000531727 LINC00032P0C843 101 aa15.14■□□□□ 0.01
CPSF1-207ENST00000531727 FOSL1P15407 271 aa15.14■□□□□ 0.01
CPSF1-207ENST00000531727 CD53P19397 219 aa15.14■□□□□ 0.01
CPSF1-207ENST00000531727 MANFP55145 182 aaKnown RBP15.14■□□□□ 0.01
CPSF1-207ENST00000531727 RPL38P63173 70 aaKnown RBP15.14■□□□□ 0.01
CPSF1-207ENST00000531727 SIRPAP78324 504 aa15.14■□□□□ 0.01
CPSF1-207ENST00000531727 FGFBP1Q14512 234 aa15.14■□□□□ 0.01
CPSF1-207ENST00000531727 PON3Q15166 354 aa15.14■□□□□ 0.01
CPSF1-207ENST00000531727 RFTN2Q52LD8 501 aaPredicted RBP15.14■□□□□ 0.01
CPSF1-207ENST00000531727 KANK2Q63ZY3 851 aa15.14■□□□□ 0.01
CPSF1-207ENST00000531727 EXOC3L1Q86VI1 746 aa15.14■□□□□ 0.01
CPSF1-207ENST00000531727 CLHC1Q8NHS4 586 aa15.14■□□□□ 0.01
CPSF1-207ENST00000531727 SLC9A6Q92581 669 aa15.14■□□□□ 0.01
CPSF1-207ENST00000531727 GIMAP5Q96F15 307 aa15.14■□□□□ 0.01
CPSF1-207ENST00000531727 POM121Q96HA1 1249 aa15.14■□□□□ 0.01
CPSF1-207ENST00000531727 ZNF845Q96IR2 970 aaPredicted RBP15.14■□□□□ 0.01
CPSF1-207ENST00000531727 WFIKKN1Q96NZ8 548 aa15.14■□□□□ 0.01
CPSF1-207ENST00000531727 MS4A4EQ96PG1 132 aa15.14■□□□□ 0.01
CPSF1-207ENST00000531727 ACSS1Q9NUB1 689 aaPredicted RBP15.14■□□□□ 0.01
CPSF1-207ENST00000531727 BEX4Q9NWD9 120 aaPredicted RBP15.14■□□□□ 0.01
CPSF1-207ENST00000531727 MKS1Q9NXB0 559 aa15.14■□□□□ 0.01
CPSF1-207ENST00000531727 ELOVL5Q9NYP7 299 aa15.14■□□□□ 0.01
CPSF1-207ENST00000531727 SH3BP4Q9P0V3 963 aa15.14■□□□□ 0.01
CPSF1-207ENST00000531727 BAIAP2L1Q9UHR4 511 aa15.14■□□□□ 0.01
CPSF1-207ENST00000531727 DNAJC15Q9Y5T4 150 aa15.14■□□□□ 0.01
CPSF1-207ENST00000531727 SHISA8B8ZZ34 492 aa15.13■□□□□ 0.01
CPSF1-207ENST00000531727 ALG1L2C9J202 215 aa15.13■□□□□ 0.01
CPSF1-207ENST00000531727 CTIFO43310 598 aaKnown RBP15.13■□□□□ 0.01
CPSF1-207ENST00000531727 GMFGO60234 142 aa15.13■□□□□ 0.01
CPSF1-207ENST00000531727 OXSR1O95747 527 aaPredicted RBP15.13■□□□□ 0.01
CPSF1-207ENST00000531727 NGFRP08138 427 aa15.13■□□□□ 0.01
CPSF1-207ENST00000531727 CD8BP10966 210 aa15.13■□□□□ 0.01
CPSF1-207ENST00000531727 ACP2P11117 423 aa15.13■□□□□ 0.01
CPSF1-207ENST00000531727 FCGR2AP12318 317 aa15.13■□□□□ 0.01
CPSF1-207ENST00000531727 POU2F1P14859 743 aa15.13■□□□□ 0.01
CPSF1-207ENST00000531727 ZNF17P17021 662 aa15.13■□□□□ 0.01
CPSF1-207ENST00000531727 GUSBP1Q15486 140 aa15.13■□□□□ 0.01
CPSF1-207ENST00000531727 CPEB4Q17RY0 729 aaKnown RBP eCLIP15.13■□□□□ 0.016e-8■■■■■ 50.8
CPSF1-207ENST00000531727 MFSD12Q6NUT3 480 aa15.13■□□□□ 0.01
CPSF1-207ENST00000531727 SZRD1Q7Z422 152 aa15.13■□□□□ 0.01
CPSF1-207ENST00000531727 GALNT10Q86SR1 603 aa15.13■□□□□ 0.01
CPSF1-207ENST00000531727 GGNQ86UU5 652 aa15.13■□□□□ 0.01
CPSF1-207ENST00000531727 HOMEZQ8IX15 550 aa15.13■□□□□ 0.01
CPSF1-207ENST00000531727 SLC16A11Q8NCK7 471 aa15.13■□□□□ 0.01
CPSF1-207ENST00000531727 OR4C3Q8NH37 302 aa15.13■□□□□ 0.01
CPSF1-207ENST00000531727 FAM110BQ8TC76 370 aa15.13■□□□□ 0.01
CPSF1-207ENST00000531727 MTERF3Q96E29 417 aa15.13■□□□□ 0.01
CPSF1-207ENST00000531727 SLC39A3Q9BRY0 314 aa15.13■□□□□ 0.01
CPSF1-207ENST00000531727 NEUROD4Q9HD90 331 aa15.13■□□□□ 0.01
CPSF1-207ENST00000531727 KLHL28Q9NXS3 571 aa15.13■□□□□ 0.01
CPSF1-207ENST00000531727 ZNF226Q9NYT6 803 aa15.13■□□□□ 0.01
CPSF1-207ENST00000531727 STOML1Q9UBI4 398 aa15.13■□□□□ 0.01
CPSF1-207ENST00000531727 VDAC3Q9Y277 283 aa15.13■□□□□ 0.01
CPSF1-207ENST00000531727 A0A087WZY1 265 aa15.12■□□□□ 0.01
CPSF1-207ENST00000531727 SIAH2O43255 324 aa15.12■□□□□ 0.01
CPSF1-207ENST00000531727 NDUFB5O43674 189 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms