RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 DCDC2Q9UHG0 476 aa10.21□□□□□ -0.77
VPS28-214ENST00000531032 CCL27Q9Y4X3 112 aa10.21□□□□□ -0.77
VPS28-214ENST00000531032 ARID1AO14497 2285 aa10.21□□□□□ -0.78
VPS28-214ENST00000531032 FAM171A2A8MVW0 826 aa10.2□□□□□ -0.78
VPS28-214ENST00000531032 NPIPB8E9PQR5 432 aa10.2□□□□□ -0.78
VPS28-214ENST00000531032 SMPD2O60906 423 aa10.2□□□□□ -0.78
VPS28-214ENST00000531032 GLRA3O75311 464 aa10.2□□□□□ -0.78
VPS28-214ENST00000531032 AQP8O94778 261 aa10.2□□□□□ -0.78
VPS28-214ENST00000531032 ANGPTL1O95841 491 aa10.2□□□□□ -0.78
VPS28-214ENST00000531032 IGKV1D-16P01601 117 aa10.2□□□□□ -0.78
VPS28-214ENST00000531032 HEXAP06865 529 aa10.2□□□□□ -0.78
VPS28-214ENST00000531032 MYL2P10916 166 aa10.2□□□□□ -0.78
VPS28-214ENST00000531032 FPR1P21462 350 aa10.2□□□□□ -0.78
VPS28-214ENST00000531032 LOXP28300 417 aaPredicted RBP10.2□□□□□ -0.78
VPS28-214ENST00000531032 GABRA3P34903 492 aa10.2□□□□□ -0.78
VPS28-214ENST00000531032 MAP3K8P41279 467 aa10.2□□□□□ -0.78
VPS28-214ENST00000531032 RPS3AP61247 264 aaKnown RBP10.2□□□□□ -0.78
VPS28-214ENST00000531032 C17orf67Q0P5P2 114 aa10.2□□□□□ -0.78
VPS28-214ENST00000531032 KIAA0040Q15053 153 aa10.2□□□□□ -0.78
VPS28-214ENST00000531032 ACKR1Q16570 336 aa10.2□□□□□ -0.78
VPS28-214ENST00000531032 NOXRED1Q6NXP6 359 aa10.2□□□□□ -0.78
VPS28-214ENST00000531032 CLEC9AQ6UXN8 241 aa10.2□□□□□ -0.78
VPS28-214ENST00000531032 APOOLQ6UXV4 268 aa10.2□□□□□ -0.78
VPS28-214ENST00000531032 C20orf204Q6ZNR8 217 aa10.2□□□□□ -0.78
VPS28-214ENST00000531032 C22orf34Q6ZV56 151 aa10.2□□□□□ -0.78
VPS28-214ENST00000531032 FAM214BQ7L5A3 538 aa10.2□□□□□ -0.78
VPS28-214ENST00000531032 ZNF550Q7Z398 422 aa10.2□□□□□ -0.78
VPS28-214ENST00000531032 GGNQ86UU5 652 aa10.2□□□□□ -0.78
VPS28-214ENST00000531032 P3H2Q8IVL5 708 aa10.2□□□□□ -0.78
VPS28-214ENST00000531032 EIF1ADQ8N9N8 165 aaKnown RBP10.2□□□□□ -0.78
VPS28-214ENST00000531032 ZNF610Q8N9Z0 462 aa10.2□□□□□ -0.78
VPS28-214ENST00000531032 CCDC63Q8NA47 563 aa10.2□□□□□ -0.78
VPS28-214ENST00000531032 ZNF764Q96H86 408 aaPredicted RBP10.2□□□□□ -0.78
VPS28-214ENST00000531032 COX4I2Q96KJ9 171 aa10.2□□□□□ -0.78
VPS28-214ENST00000531032 HS3ST6Q96QI5 342 aa10.2□□□□□ -0.78
VPS28-214ENST00000531032 CCL19Q99731 98 aa10.2□□□□□ -0.78
VPS28-214ENST00000531032 TXLNGYQ9BZA5 131 aa10.2□□□□□ -0.78
VPS28-214ENST00000531032 TBL1XR1Q9BZK7 514 aa10.2□□□□□ -0.78
VPS28-214ENST00000531032 ZNF395Q9H8N7 513 aaPredicted RBP10.2□□□□□ -0.78
VPS28-214ENST00000531032 PPCSQ9HAB8 311 aa10.2□□□□□ -0.78
VPS28-214ENST00000531032 C3orf14Q9HBI5 128 aa10.2□□□□□ -0.78
VPS28-214ENST00000531032 TNFRSF12AQ9NP84 129 aa10.2□□□□□ -0.78
VPS28-214ENST00000531032 RRAGDQ9NQL2 400 aaPredicted RBP10.2□□□□□ -0.78
VPS28-214ENST00000531032 PROCRQ9UNN8 238 aa10.2□□□□□ -0.78
VPS28-214ENST00000531032 FN1P02751 2386 aaKnown RBP10.19□□□□□ -0.78
VPS28-214ENST00000531032 GXYLT2A0PJZ3 443 aa10.19□□□□□ -0.78
VPS28-214ENST00000531032 ALG1L2C9J202 215 aa10.19□□□□□ -0.78
VPS28-214ENST00000531032 CRCPO75575 148 aa10.19□□□□□ -0.78
VPS28-214ENST00000531032 KCNH1O95259 989 aa10.19□□□□□ -0.78
VPS28-214ENST00000531032 PROCP04070 461 aa10.19□□□□□ -0.78
VPS28-214ENST00000531032 NGFRP08138 427 aa10.19□□□□□ -0.78
VPS28-214ENST00000531032 ZNF17P17021 662 aa10.19□□□□□ -0.78
VPS28-214ENST00000531032 PRPH2P23942 346 aa10.19□□□□□ -0.78
VPS28-214ENST00000531032 SLC6A8P48029 635 aa10.19□□□□□ -0.78
VPS28-214ENST00000531032 RFX3P48380 749 aa10.19□□□□□ -0.78
VPS28-214ENST00000531032 KCNJ5P48544 419 aa10.19□□□□□ -0.78
VPS28-214ENST00000531032 DNAJB13P59910 316 aa10.19□□□□□ -0.78
VPS28-214ENST00000531032 GRAMD1BQ3KR37 738 aa10.19□□□□□ -0.78
VPS28-214ENST00000531032 SH2D5Q6ZV89 423 aa10.19□□□□□ -0.78
VPS28-214ENST00000531032 ZNF551Q7Z340 670 aaPredicted RBP10.19□□□□□ -0.78
VPS28-214ENST00000531032 EGLN2Q96KS0 407 aa10.19□□□□□ -0.78
VPS28-214ENST00000531032 L2HGDHQ9H9P8 463 aa10.19□□□□□ -0.78
VPS28-214ENST00000531032 UBTD1Q9HAC8 227 aa10.19□□□□□ -0.78
VPS28-214ENST00000531032 HHATLQ9HCP6 504 aa10.19□□□□□ -0.78
VPS28-214ENST00000531032 EQTNQ9NQ60 294 aa10.19□□□□□ -0.78
VPS28-214ENST00000531032 NTMQ9P121 344 aa10.19□□□□□ -0.78
VPS28-214ENST00000531032 DSCAMO60469 2012 aa10.18□□□□□ -0.78
VPS28-214ENST00000531032 GIMAP1-GIMAP5A0A087WTJ2 511 aa10.18□□□□□ -0.78
VPS28-214ENST00000531032 A0A087WZY1 265 aa10.18□□□□□ -0.78
VPS28-214ENST00000531032 A0A1W2PPM1 405 aa10.18□□□□□ -0.78
VPS28-214ENST00000531032 C7orf72A4D263 438 aa10.18□□□□□ -0.78
VPS28-214ENST00000531032 SHISA8B8ZZ34 492 aa10.18□□□□□ -0.78
VPS28-214ENST00000531032 PDPK1O15530 556 aa10.18□□□□□ -0.78
VPS28-214ENST00000531032 PLIN3O60664 434 aa10.18□□□□□ -0.78
VPS28-214ENST00000531032 SS18L1O75177 396 aaPredicted RBP10.18□□□□□ -0.78
VPS28-214ENST00000531032 NKX2-2O95096 273 aa10.18□□□□□ -0.78
VPS28-214ENST00000531032 OXSR1O95747 527 aaPredicted RBP10.18□□□□□ -0.78
VPS28-214ENST00000531032 UROSP10746 265 aa10.18□□□□□ -0.78
VPS28-214ENST00000531032 PRPS2P11908 318 aa10.18□□□□□ -0.78
VPS28-214ENST00000531032 PPP3CBP16298 524 aa10.18□□□□□ -0.78
VPS28-214ENST00000531032 IL11P20809 199 aa10.18□□□□□ -0.78
VPS28-214ENST00000531032 TBXA2RP21731 343 aa10.18□□□□□ -0.78
VPS28-214ENST00000531032 FRKP42685 505 aaPredicted RBP10.18□□□□□ -0.78
VPS28-214ENST00000531032 HSPB3Q12988 150 aa10.18□□□□□ -0.78
VPS28-214ENST00000531032 SGCBQ16585 318 aa10.18□□□□□ -0.78
VPS28-214ENST00000531032 CPEB4Q17RY0 729 aaKnown RBP eCLIP10.18□□□□□ -0.78
VPS28-214ENST00000531032 CTU2Q2VPK5 515 aaKnown RBP10.18□□□□□ -0.78
VPS28-214ENST00000531032 CCDC153Q494R4 210 aa10.18□□□□□ -0.78
VPS28-214ENST00000531032 VPS26BQ4G0F5 336 aa10.18□□□□□ -0.78
VPS28-214ENST00000531032 CFAP157Q5JU67 520 aa10.18□□□□□ -0.78
VPS28-214ENST00000531032 CIARTQ8N365 385 aaPredicted RBP10.18□□□□□ -0.78
VPS28-214ENST00000531032 GTPBP8Q8N3Z3 284 aaPredicted RBP10.18□□□□□ -0.78
VPS28-214ENST00000531032 CDRT4Q8N9R6 151 aa10.18□□□□□ -0.78
VPS28-214ENST00000531032 OR6K3Q8NGY3 331 aa10.18□□□□□ -0.78
VPS28-214ENST00000531032 OR4C3Q8NH37 302 aa10.18□□□□□ -0.78
VPS28-214ENST00000531032 PPP1R14CQ8TAE6 165 aa10.18□□□□□ -0.78
VPS28-214ENST00000531032 GPR151Q8TDV0 419 aa10.18□□□□□ -0.78
VPS28-214ENST00000531032 IGFBPL1Q8WX77 278 aa10.18□□□□□ -0.78
VPS28-214ENST00000531032 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP10.18□□□□□ -0.78
VPS28-214ENST00000531032 PIK3R3Q92569 461 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms