RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 KRTAP10-9P60411 292 aa10.42□□□□□ -0.74
VCAN-212ENST00000515397 UFM1P61960 85 aa10.42□□□□□ -0.74
VCAN-212ENST00000515397 VPS26BQ4G0F5 336 aa10.42□□□□□ -0.74
VCAN-212ENST00000515397 NHSL2Q5HYW2 709 aa10.42□□□□□ -0.74
VCAN-212ENST00000515397 ARSKQ6UWY0 536 aa10.42□□□□□ -0.74
VCAN-212ENST00000515397 IFNEQ86WN2 208 aa10.42□□□□□ -0.74
VCAN-212ENST00000515397 WDR75Q8IWA0 830 aaKnown RBP10.42□□□□□ -0.74
VCAN-212ENST00000515397 COX18Q8N8Q8 333 aa10.42□□□□□ -0.74
VCAN-212ENST00000515397 FADS6Q8N9I5 356 aa10.42□□□□□ -0.74
VCAN-212ENST00000515397 C9orf106Q8NAJ2 232 aa10.42□□□□□ -0.74
VCAN-212ENST00000515397 OR5D16Q8NGK9 328 aa10.42□□□□□ -0.74
VCAN-212ENST00000515397 HOXB13Q92826 284 aaPredicted RBP10.42□□□□□ -0.74
VCAN-212ENST00000515397 SH3YL1Q96HL8 342 aaPredicted RBP10.42□□□□□ -0.74
VCAN-212ENST00000515397 MARK4Q96L34 752 aa10.42□□□□□ -0.74
VCAN-212ENST00000515397 PRPF18Q99633 342 aaKnown RBP10.42□□□□□ -0.74
VCAN-212ENST00000515397 NPAS1Q99742 590 aa10.42□□□□□ -0.74
VCAN-212ENST00000515397 G6PC3Q9BUM1 346 aa10.42□□□□□ -0.74
VCAN-212ENST00000515397 TBL1XR1Q9BZK7 514 aa10.42□□□□□ -0.74
VCAN-212ENST00000515397 DPY30Q9C005 99 aa10.42□□□□□ -0.74
VCAN-212ENST00000515397 PRDM14Q9GZV8 571 aa10.42□□□□□ -0.74
VCAN-212ENST00000515397 MANSC1Q9H8J5 431 aa10.42□□□□□ -0.74
VCAN-212ENST00000515397 MEAF6Q9HAF1 191 aa10.42□□□□□ -0.74
VCAN-212ENST00000515397 ATAD3AQ9NVI7 634 aa10.42□□□□□ -0.74
VCAN-212ENST00000515397 FAM120CQ9NX05 1096 aaKnown RBP10.42□□□□□ -0.74
VCAN-212ENST00000515397 NKIRAS1Q9NYS0 192 aa10.42□□□□□ -0.74
VCAN-212ENST00000515397 MRTO4Q9UKD2 239 aaKnown RBP10.42□□□□□ -0.74
VCAN-212ENST00000515397 ZNF337Q9Y3M9 751 aa10.42□□□□□ -0.74
VCAN-212ENST00000515397 TACC2O95359 2948 aa10.41□□□□□ -0.74
VCAN-212ENST00000515397 MYO9AB2RTY4 2548 aa10.41□□□□□ -0.74
VCAN-212ENST00000515397 H0Y3Z8 333 aa10.41□□□□□ -0.74
VCAN-212ENST00000515397 SNNO75324 88 aaPredicted RBP10.41□□□□□ -0.74
VCAN-212ENST00000515397 OXSR1O95747 527 aaPredicted RBP10.41□□□□□ -0.74
VCAN-212ENST00000515397 HOXD4P09016 255 aaPredicted RBP10.41□□□□□ -0.74
VCAN-212ENST00000515397 LBPP18428 481 aa10.41□□□□□ -0.74
VCAN-212ENST00000515397 IL12AP29459 219 aa10.41□□□□□ -0.74
VCAN-212ENST00000515397 RPL3P39023 403 aaKnown RBP10.41□□□□□ -0.74
VCAN-212ENST00000515397 PRIM2P49643 509 aa10.41□□□□□ -0.74
VCAN-212ENST00000515397 LHX2P50458 406 aa10.41□□□□□ -0.74
VCAN-212ENST00000515397 DGKQP52824 942 aa10.41□□□□□ -0.74
VCAN-212ENST00000515397 PSMD4P55036 377 aaKnown RBP10.41□□□□□ -0.74
VCAN-212ENST00000515397 DLX5P56178 289 aa10.41□□□□□ -0.74
VCAN-212ENST00000515397 DSCR4P56555 118 aaPredicted RBP10.41□□□□□ -0.74
VCAN-212ENST00000515397 POU6F2P78424 691 aaPredicted RBP10.41□□□□□ -0.74
VCAN-212ENST00000515397 PRR5P85299 388 aa10.41□□□□□ -0.74
VCAN-212ENST00000515397 FOXF2Q12947 444 aa10.41□□□□□ -0.74
VCAN-212ENST00000515397 MAD2L1Q13257 205 aaPredicted RBP10.41□□□□□ -0.74
VCAN-212ENST00000515397 MLC1Q15049 377 aa10.41□□□□□ -0.74
VCAN-212ENST00000515397 LSM12Q3MHD2 195 aaKnown RBP10.41□□□□□ -0.74
VCAN-212ENST00000515397 RIPPLY2Q5TAB7 128 aa10.41□□□□□ -0.74
VCAN-212ENST00000515397 RAET1LQ5VY80 246 aa10.41□□□□□ -0.74
VCAN-212ENST00000515397 NXNQ6DKJ4 435 aa10.41□□□□□ -0.74
VCAN-212ENST00000515397 LSRQ86X29 649 aaPredicted RBP10.41□□□□□ -0.74
VCAN-212ENST00000515397 PM20D2Q8IYS1 436 aa10.41□□□□□ -0.74
VCAN-212ENST00000515397 OR4A15Q8NGL6 344 aa10.41□□□□□ -0.74
VCAN-212ENST00000515397 FAM110BQ8TC76 370 aa10.41□□□□□ -0.74
VCAN-212ENST00000515397 ADAMTS15Q8TE58 950 aa10.41□□□□□ -0.74
VCAN-212ENST00000515397 SMPDL3BQ92485 455 aa10.41□□□□□ -0.74
VCAN-212ENST00000515397 ZNF75CPQ92670 426 aaPredicted RBP10.41□□□□□ -0.74
VCAN-212ENST00000515397 ARSGQ96EG1 525 aa10.41□□□□□ -0.74
VCAN-212ENST00000515397 TRIM8Q9BZR9 551 aa10.41□□□□□ -0.74
VCAN-212ENST00000515397 BHLHE41Q9C0J9 482 aaPredicted RBP10.41□□□□□ -0.74
VCAN-212ENST00000515397 SERHL2Q9H4I8 314 aa10.41□□□□□ -0.74
VCAN-212ENST00000515397 SDHAF3Q9NRP4 125 aa10.41□□□□□ -0.74
VCAN-212ENST00000515397 THAP1Q9NVV9 213 aa10.41□□□□□ -0.74
VCAN-212ENST00000515397 GPATCH2Q9NW75 528 aa10.41□□□□□ -0.74
VCAN-212ENST00000515397 HAO1Q9UJM8 370 aa10.41□□□□□ -0.74
VCAN-212ENST00000515397 FAF1Q9UNN5 650 aaPredicted RBP10.41□□□□□ -0.74
VCAN-212ENST00000515397 VDAC3Q9Y277 283 aa10.41□□□□□ -0.74
VCAN-212ENST00000515397 CCDC168Q8NDH2 2452 aa10.4□□□□□ -0.74
VCAN-212ENST00000515397 CLCA1A8K7I4 914 aa10.4□□□□□ -0.74
VCAN-212ENST00000515397 ANKRD28O15084 1053 aa10.4□□□□□ -0.74
VCAN-212ENST00000515397 OIP5O43482 229 aa10.4□□□□□ -0.74
VCAN-212ENST00000515397 NDUFB5O43674 189 aa10.4□□□□□ -0.74
VCAN-212ENST00000515397 SCN2BO60939 215 aa10.4□□□□□ -0.74
VCAN-212ENST00000515397 ACTL6AO96019 429 aa10.4□□□□□ -0.74
VCAN-212ENST00000515397 CPN1P15169 458 aa10.4□□□□□ -0.74
VCAN-212ENST00000515397 CEACAM8P31997 349 aaPredicted RBP10.4□□□□□ -0.74
VCAN-212ENST00000515397 CLK3P49761 638 aaKnown RBP10.4□□□□□ -0.74
VCAN-212ENST00000515397 ZNF136P52737 540 aa10.4□□□□□ -0.74
VCAN-212ENST00000515397 SUCLG1P53597 346 aaKnown RBP10.4□□□□□ -0.74
VCAN-212ENST00000515397 CLDN15P56746 228 aa10.4□□□□□ -0.74
VCAN-212ENST00000515397 CLDN18P56856 261 aa10.4□□□□□ -0.74
VCAN-212ENST00000515397 PSPHP78330 225 aa10.4□□□□□ -0.74
VCAN-212ENST00000515397 OCRLQ01968 901 aa10.4□□□□□ -0.74
VCAN-212ENST00000515397 CD226Q15762 336 aa10.4□□□□□ -0.74
VCAN-212ENST00000515397 NDUFAF6Q330K2 333 aa10.4□□□□□ -0.74
VCAN-212ENST00000515397 SLC9B1Q4ZJI4 515 aa10.4□□□□□ -0.74
VCAN-212ENST00000515397 TTMPQ5BVD1 217 aa10.4□□□□□ -0.74
VCAN-212ENST00000515397 SPANXN4Q5MJ08 99 aa10.4□□□□□ -0.74
VCAN-212ENST00000515397 EXOSC6Q5RKV6 272 aaKnown RBP10.4□□□□□ -0.74
VCAN-212ENST00000515397 NSUN5P2Q63ZY6 315 aa10.4□□□□□ -0.74
VCAN-212ENST00000515397 CDC73Q6P1J9 531 aa10.4□□□□□ -0.74
VCAN-212ENST00000515397 POMZP3Q6PJE2 187 aa10.4□□□□□ -0.74
VCAN-212ENST00000515397 MAVSQ7Z434 540 aa10.4□□□□□ -0.74
VCAN-212ENST00000515397 C6orf120Q7Z4R8 191 aa10.4□□□□□ -0.74
VCAN-212ENST00000515397 HMGN2P46Q86SG4 172 aa10.4□□□□□ -0.74
VCAN-212ENST00000515397 HOMEZQ8IX15 550 aa10.4□□□□□ -0.74
VCAN-212ENST00000515397 GCNT2Q8N0V5 402 aa10.4□□□□□ -0.74
VCAN-212ENST00000515397 RELL2Q8NC24 303 aaPredicted RBP10.4□□□□□ -0.74
VCAN-212ENST00000515397 C1GALT1C1Q96EU7 318 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms