RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 HMGN4O00479 90 aa13.02□□□□□ -0.33
NUP54-216ENST00000514901 GNB5O14775 395 aa13.02□□□□□ -0.33
NUP54-216ENST00000514901 SNX3O60493 162 aa13.02□□□□□ -0.33
NUP54-216ENST00000514901 CDC40O60508 579 aaKnown RBP eCLIP13.02□□□□□ -0.33
NUP54-216ENST00000514901 OXSR1O95747 527 aaPredicted RBP13.02□□□□□ -0.33
NUP54-216ENST00000514901 FREM3P0C091 2139 aa13.02□□□□□ -0.33
NUP54-216ENST00000514901 RFPL3SP0C7P2 107 aa13.02□□□□□ -0.33
NUP54-216ENST00000514901 GDF1P27539 372 aa13.02□□□□□ -0.33
NUP54-216ENST00000514901 ATP12AP54707 1039 aa13.02□□□□□ -0.33
NUP54-216ENST00000514901 CASP9P55211 416 aa13.02□□□□□ -0.33
NUP54-216ENST00000514901 KLF10Q13118 480 aa13.02□□□□□ -0.33
NUP54-216ENST00000514901 FADDQ13158 208 aa13.02□□□□□ -0.33
NUP54-216ENST00000514901 MRPL49Q13405 166 aaKnown RBP13.02□□□□□ -0.33
NUP54-216ENST00000514901 FLYWCH1Q4VC44 716 aa13.02□□□□□ -0.33
NUP54-216ENST00000514901 PAGE3Q5JUK9 113 aa13.02□□□□□ -0.33
NUP54-216ENST00000514901 WDSUB1Q8N9V3 476 aa13.02□□□□□ -0.33
NUP54-216ENST00000514901 OR4C3Q8NH37 302 aa13.02□□□□□ -0.33
NUP54-216ENST00000514901 PMM1Q92871 262 aa13.02□□□□□ -0.33
NUP54-216ENST00000514901 RAB8BQ92930 207 aa13.02□□□□□ -0.33
NUP54-216ENST00000514901 ROPN1LQ96C74 230 aa13.02□□□□□ -0.33
NUP54-216ENST00000514901 TRNT1Q96Q11 434 aaKnown RBP13.02□□□□□ -0.33
NUP54-216ENST00000514901 NMUR2Q9GZQ4 415 aa13.02□□□□□ -0.33
NUP54-216ENST00000514901 FAM107BQ9H098 131 aa13.02□□□□□ -0.33
NUP54-216ENST00000514901 UBQLN3Q9H347 655 aa13.02□□□□□ -0.33
NUP54-216ENST00000514901 LDAHQ9H6V9 325 aa13.02□□□□□ -0.33
NUP54-216ENST00000514901 SLC6A13Q9NSD5 602 aa13.02□□□□□ -0.33
NUP54-216ENST00000514901 FBXO34Q9NWN3 711 aa13.02□□□□□ -0.33
NUP54-216ENST00000514901 FLRT3Q9NZU0 649 aa13.02□□□□□ -0.33
NUP54-216ENST00000514901 CORO2BQ9UQ03 480 aa13.02□□□□□ -0.33
NUP54-216ENST00000514901 CAPN7Q9Y6W3 813 aa13.02□□□□□ -0.33
NUP54-216ENST00000514901 IGLV3-32A0A0A0MS00 114 aa13.01□□□□□ -0.33
NUP54-216ENST00000514901 C2orf72A6NCS6 295 aa13.01□□□□□ -0.33
NUP54-216ENST00000514901 OR14I1A6ND48 311 aa13.01□□□□□ -0.33
NUP54-216ENST00000514901 TMEM247A6NEH6 219 aa13.01□□□□□ -0.33
NUP54-216ENST00000514901 BBIP1A8MTZ0 92 aa13.01□□□□□ -0.33
NUP54-216ENST00000514901 EVPLLA8MZ36 301 aa13.01□□□□□ -0.33
NUP54-216ENST00000514901 NDUFB5O43674 189 aa13.01□□□□□ -0.33
NUP54-216ENST00000514901 SCO2O43819 266 aa13.01□□□□□ -0.33
NUP54-216ENST00000514901 TRAPPC6AO75865 159 aa13.01□□□□□ -0.33
NUP54-216ENST00000514901 WISP2O76076 250 aa13.01□□□□□ -0.33
NUP54-216ENST00000514901 ANGPTL1O95841 491 aa13.01□□□□□ -0.33
NUP54-216ENST00000514901 HPNP05981 417 aa13.01□□□□□ -0.33
NUP54-216ENST00000514901 MSX1P28360 303 aa13.01□□□□□ -0.33
NUP54-216ENST00000514901 DCTP40126 519 aa13.01□□□□□ -0.33
NUP54-216ENST00000514901 CRATP43155 626 aa13.01□□□□□ -0.33
NUP54-216ENST00000514901 CASP6P55212 293 aa13.01□□□□□ -0.33
NUP54-216ENST00000514901 HPCAP84074 193 aa13.01□□□□□ -0.33
NUP54-216ENST00000514901 UBAP2LQ14157 1087 aaKnown RBP13.01□□□□□ -0.33
NUP54-216ENST00000514901 GNA13Q14344 377 aa13.01□□□□□ -0.33
NUP54-216ENST00000514901 KLHL26Q53HC5 615 aa13.01□□□□□ -0.33
NUP54-216ENST00000514901 COQ5Q5HYK3 327 aa13.01□□□□□ -0.33
NUP54-216ENST00000514901 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.01□□□□□ -0.33
NUP54-216ENST00000514901 TRILQ7L0X0 811 aa13.01□□□□□ -0.33
NUP54-216ENST00000514901 MTERF4Q7Z6M4 381 aaKnown RBP13.01□□□□□ -0.33
NUP54-216ENST00000514901 ZAR1Q86SH2 424 aa13.01□□□□□ -0.33
NUP54-216ENST00000514901 GALNT10Q86SR1 603 aa13.01□□□□□ -0.33
NUP54-216ENST00000514901 MARCH3Q86UD3 253 aa13.01□□□□□ -0.33
NUP54-216ENST00000514901 SPPL2CQ8IUH8 684 aa13.01□□□□□ -0.33
NUP54-216ENST00000514901 OR4K17Q8NGC6 315 aa13.01□□□□□ -0.33
NUP54-216ENST00000514901 DUSP19Q8WTR2 217 aa13.01□□□□□ -0.33
NUP54-216ENST00000514901 ZNF350Q9GZX5 532 aa13.01□□□□□ -0.33
NUP54-216ENST00000514901 SAP130Q9H0E3 1048 aa13.01□□□□□ -0.33
NUP54-216ENST00000514901 PTGES2Q9H7Z7 377 aa13.01□□□□□ -0.33
NUP54-216ENST00000514901 CALML5Q9NZT1 146 aa13.01□□□□□ -0.33
NUP54-216ENST00000514901 TRBV5-3A0A0A0MS03 114 aa13□□□□□ -0.33
NUP54-216ENST00000514901 TRGV5A0A0B4J1U4 118 aa13□□□□□ -0.33
NUP54-216ENST00000514901 A0A1B0GTH9 108 aa13□□□□□ -0.33
NUP54-216ENST00000514901 NPIPB9F8W1W9 429 aa13□□□□□ -0.33
NUP54-216ENST00000514901 AQP7O14520 342 aa13□□□□□ -0.33
NUP54-216ENST00000514901 PDE9AO76083 593 aa13□□□□□ -0.33
NUP54-216ENST00000514901 NPPAP01160 153 aa13□□□□□ -0.33
NUP54-216ENST00000514901 STSP08842 583 aa13□□□□□ -0.33
NUP54-216ENST00000514901 NR2F1P10589 423 aa13□□□□□ -0.33
NUP54-216ENST00000514901 HOXB9P17482 250 aaPredicted RBP13□□□□□ -0.33
NUP54-216ENST00000514901 SRD5A2P31213 254 aa13□□□□□ -0.33
NUP54-216ENST00000514901 PTGS2P35354 604 aa13□□□□□ -0.33
NUP54-216ENST00000514901 GCKP35557 465 aa13□□□□□ -0.33
NUP54-216ENST00000514901 UQCRFS1P47985 274 aa13□□□□□ -0.33
NUP54-216ENST00000514901 MVDP53602 400 aa13□□□□□ -0.33
NUP54-216ENST00000514901 DSTNP60981 165 aa13□□□□□ -0.33
NUP54-216ENST00000514901 STX5Q13190 355 aa13□□□□□ -0.33
NUP54-216ENST00000514901 GANABQ14697 944 aaKnown RBP13□□□□□ -0.33
NUP54-216ENST00000514901 TOMM20Q15388 145 aa13□□□□□ -0.33
NUP54-216ENST00000514901 RGNQ15493 299 aa13□□□□□ -0.33
NUP54-216ENST00000514901 EIF2S3LQ2VIR3 472 aaKnown RBP13□□□□□ -0.33
NUP54-216ENST00000514901 GTDC1Q4AE62 458 aa13□□□□□ -0.33
NUP54-216ENST00000514901 GPAT3Q53EU6 434 aa13□□□□□ -0.33
NUP54-216ENST00000514901 COX20Q5RI15 118 aa13□□□□□ -0.33
NUP54-216ENST00000514901 APOOLQ6UXV4 268 aa13□□□□□ -0.33
NUP54-216ENST00000514901 DLEU7Q6UYE1 221 aa13□□□□□ -0.33
NUP54-216ENST00000514901 Q6ZPB1 254 aaPredicted RBP13□□□□□ -0.33
NUP54-216ENST00000514901 LRRC74BQ6ZQY2 392 aa13□□□□□ -0.33
NUP54-216ENST00000514901 FADS6Q8N9I5 356 aa13□□□□□ -0.33
NUP54-216ENST00000514901 PRR7Q8TB68 274 aa13□□□□□ -0.33
NUP54-216ENST00000514901 PNPT1Q8TCS8 783 aaKnown RBP13□□□□□ -0.33
NUP54-216ENST00000514901 SARAFQ96BY9 339 aa13□□□□□ -0.33
NUP54-216ENST00000514901 AURKBQ96GD4 344 aaPredicted RBP13□□□□□ -0.33
NUP54-216ENST00000514901 EXO5Q9H790 373 aa13□□□□□ -0.33
NUP54-216ENST00000514901 MTHFD2LQ9H903 347 aaPredicted RBP13□□□□□ -0.33
NUP54-216ENST00000514901 SLC25A37Q9NYZ2 338 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms