RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 NIPSNAP1Q9BPW8 284 aa11.94□□□□□ -0.5
USP53-209ENST00000514665 PINK1Q9BXM7 581 aa11.94□□□□□ -0.5
USP53-209ENST00000514665 OR2S2Q9NQN1 319 aa11.94□□□□□ -0.5
USP53-209ENST00000514665 TEX10Q9NXF1 929 aaPredicted RBP11.94□□□□□ -0.5
USP53-209ENST00000514665 CNOT2Q9NZN8 540 aaKnown RBP11.94□□□□□ -0.5
USP53-209ENST00000514665 NUP50Q9UKX7 468 aa11.94□□□□□ -0.5
USP53-209ENST00000514665 PLCL2Q9UPR0 1127 aa11.94□□□□□ -0.5
USP53-209ENST00000514665 ARHGAP33O14559 1287 aa11.94□□□□□ -0.5
USP53-209ENST00000514665 TIMP1P01033 207 aa11.94□□□□□ -0.5
USP53-209ENST00000514665 KLK3P07288 261 aaPredicted RBP11.94□□□□□ -0.5
USP53-209ENST00000514665 THEGLP0DJG4 465 aa11.94□□□□□ -0.5
USP53-209ENST00000514665 PSMB10P40306 273 aa11.94□□□□□ -0.5
USP53-209ENST00000514665 SOX9P48436 509 aa11.94□□□□□ -0.5
USP53-209ENST00000514665 ZNF41P51814 821 aaPredicted RBP11.94□□□□□ -0.5
USP53-209ENST00000514665 NSDHLQ15738 373 aa11.94□□□□□ -0.5
USP53-209ENST00000514665 NRARPQ7Z6K4 114 aa11.94□□□□□ -0.5
USP53-209ENST00000514665 TMEFF1Q8IYR6 380 aa11.94□□□□□ -0.5
USP53-209ENST00000514665 C17orf50Q8WW18 174 aa11.94□□□□□ -0.5
USP53-209ENST00000514665 OR5M11Q96RB7 305 aa11.94□□□□□ -0.5
USP53-209ENST00000514665 CXorf36Q9H7Y0 433 aa11.94□□□□□ -0.5
USP53-209ENST00000514665 GPR34Q9UPC5 381 aa11.94□□□□□ -0.5
USP53-209ENST00000514665 DHDHQ9UQ10 334 aa11.94□□□□□ -0.5
USP53-209ENST00000514665 PCDHGA3Q9Y5H0 932 aa11.94□□□□□ -0.5
USP53-209ENST00000514665 TMEM202A6NGA9 273 aa11.93□□□□□ -0.5
USP53-209ENST00000514665 IFNA21P01568 189 aa11.93□□□□□ -0.5
USP53-209ENST00000514665 ACPPP15309 386 aa11.93□□□□□ -0.5
USP53-209ENST00000514665 P2RY2P41231 377 aa11.93□□□□□ -0.5
USP53-209ENST00000514665 FRKP42685 505 aaPredicted RBP11.93□□□□□ -0.5
USP53-209ENST00000514665 VEGFBP49765 207 aa11.93□□□□□ -0.5
USP53-209ENST00000514665 GALK2Q01415 458 aa11.93□□□□□ -0.5
USP53-209ENST00000514665 MBTPS1Q14703 1052 aa11.93□□□□□ -0.5
USP53-209ENST00000514665 ANKRD54Q6NXT1 300 aa11.93□□□□□ -0.5
USP53-209ENST00000514665 BCDIN3DQ7Z5W3 292 aaKnown RBP11.93□□□□□ -0.5
USP53-209ENST00000514665 CHFRQ96EP1 664 aa11.93□□□□□ -0.5
USP53-209ENST00000514665 ZDHHC12Q96GR4 267 aa11.93□□□□□ -0.5
USP53-209ENST00000514665 OR52D1Q9H346 318 aa11.93□□□□□ -0.5
USP53-209ENST00000514665 MYEF2Q9P2K5 600 aaKnown RBP11.93□□□□□ -0.5
USP53-209ENST00000514665 MAST2Q6P0Q8 1798 aa11.93□□□□□ -0.5
USP53-209ENST00000514665 HYKKA2RU49 373 aa11.93□□□□□ -0.5
USP53-209ENST00000514665 MEIOCA2RUB1 952 aa11.93□□□□□ -0.5
USP53-209ENST00000514665 GPR89AB7ZAQ6 455 aa11.93□□□□□ -0.5
USP53-209ENST00000514665 KIAA0355O15063 1070 aa11.93□□□□□ -0.5
USP53-209ENST00000514665 CASC3O15234 703 aaKnown RBP11.93□□□□□ -0.5
USP53-209ENST00000514665 ZNF208O43345 1280 aa11.93□□□□□ -0.5
USP53-209ENST00000514665 AP1G1O43747 822 aa11.93□□□□□ -0.5
USP53-209ENST00000514665 HPGDSO60760 199 aa11.93□□□□□ -0.5
USP53-209ENST00000514665 IGLV3-25P01717 112 aa11.93□□□□□ -0.5
USP53-209ENST00000514665 CD3GP09693 182 aa11.93□□□□□ -0.5
USP53-209ENST00000514665 GPR89BP0CG08 455 aa11.93□□□□□ -0.5
USP53-209ENST00000514665 FUT1P19526 365 aa11.93□□□□□ -0.5
USP53-209ENST00000514665 PRKXP51817 358 aa11.93□□□□□ -0.5
USP53-209ENST00000514665 RAB2AP61019 212 aa11.93□□□□□ -0.5
USP53-209ENST00000514665 ADARB1P78563 741 aaKnown RBP11.93□□□□□ -0.5
USP53-209ENST00000514665 ARHGAP19Q14CB8 494 aa11.93□□□□□ -0.5
USP53-209ENST00000514665 SGCAQ16586 387 aa11.93□□□□□ -0.5
USP53-209ENST00000514665 HYAL4Q2M3T9 481 aa11.93□□□□□ -0.5
USP53-209ENST00000514665 GGTA1PQ4G0N0 100 aa11.93□□□□□ -0.5
USP53-209ENST00000514665 CCDC28AQ8IWP9 274 aa11.93□□□□□ -0.5
USP53-209ENST00000514665 SPAG16Q8N0X2 631 aa11.93□□□□□ -0.5
USP53-209ENST00000514665 OR2T4Q8NH00 348 aa11.93□□□□□ -0.5
USP53-209ENST00000514665 ADAMTS19Q8TE59 1207 aa11.93□□□□□ -0.5
USP53-209ENST00000514665 TMEM234Q8WY98 164 aa11.93□□□□□ -0.5
USP53-209ENST00000514665 DAZLQ92904 295 aaKnown RBP11.93□□□□□ -0.5
USP53-209ENST00000514665 BPIFA2Q96DR5 249 aa11.93□□□□□ -0.5
USP53-209ENST00000514665 ZNF486Q96H40 463 aaPredicted RBP11.93□□□□□ -0.5
USP53-209ENST00000514665 ZNF559Q9BR84 538 aa11.93□□□□□ -0.5
USP53-209ENST00000514665 PRR14Q9BWN1 585 aa11.93□□□□□ -0.5
USP53-209ENST00000514665 ALOXE3Q9BYJ1 711 aa11.93□□□□□ -0.5
USP53-209ENST00000514665 POTEKPQ9BYX7 375 aa11.93□□□□□ -0.5
USP53-209ENST00000514665 AMBRA1Q9C0C7 1298 aa11.93□□□□□ -0.5
USP53-209ENST00000514665 DNMT3BQ9UBC3 853 aaKnown RBP11.93□□□□□ -0.5
USP53-209ENST00000514665 CA5BQ9Y2D0 317 aa11.93□□□□□ -0.5
USP53-209ENST00000514665 GVINP1Q7Z2Y8 2422 aa11.93□□□□□ -0.5
USP53-209ENST00000514665 LOC102723532A0A0G2JNH3 316 aa11.93□□□□□ -0.5
USP53-209ENST00000514665 F5H0A9 414 aaPredicted RBP11.93□□□□□ -0.5
USP53-209ENST00000514665 SGK494L7N484 410 aa11.93□□□□□ -0.5
USP53-209ENST00000514665 CREBL2O60519 120 aaPredicted RBP11.93□□□□□ -0.5
USP53-209ENST00000514665 SEMA4FO95754 770 aa11.93□□□□□ -0.5
USP53-209ENST00000514665 GPX2P18283 190 aa11.93□□□□□ -0.5
USP53-209ENST00000514665 EIF5AP63241 154 aaKnown RBP11.93□□□□□ -0.5
USP53-209ENST00000514665 CARD17Q5XLA6 110 aa11.93□□□□□ -0.5
USP53-209ENST00000514665 ZNF584Q8IVC4 421 aa11.93□□□□□ -0.5
USP53-209ENST00000514665 FTMTQ8N4E7 242 aa11.93□□□□□ -0.5
USP53-209ENST00000514665 FKBP10Q96AY3 582 aa11.93□□□□□ -0.5
USP53-209ENST00000514665 WDR77Q9BQA1 342 aaPredicted RBP11.93□□□□□ -0.5
USP53-209ENST00000514665 SLC25A18Q9H1K4 315 aa11.93□□□□□ -0.5
USP53-209ENST00000514665 IKZF5Q9H5V7 419 aa11.93□□□□□ -0.5
USP53-209ENST00000514665 RANBP3Q9H6Z4 567 aaPredicted RBP11.93□□□□□ -0.5
USP53-209ENST00000514665 PTGES2Q9H7Z7 377 aa11.93□□□□□ -0.5
USP53-209ENST00000514665 TRAV18A0A075B6X5 111 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 TRAV27A0A087WT01 109 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 CLDN24A6NM45 220 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 GFRA2O00451 464 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 LRRTM2O43300 516 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 PRKRAO75569 313 aaKnown RBP11.92□□□□□ -0.5
USP53-209ENST00000514665 VNN2O95498 520 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 PLATP00750 562 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 ERVFC1P60507 584 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 RAB40BQ12829 278 aa11.92□□□□□ -0.5
USP53-209ENST00000514665 C11orf91Q3C1V1 193 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms