RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 PCDHGA7Q9Y5G6 932 aa10.65□□□□□ -0.7
LIMCH1-217ENST00000512946 TET3O43151 1660 aa10.65□□□□□ -0.71
LIMCH1-217ENST00000512946 LOC102723532A0A0G2JNH3 316 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 TCRBV3S1A0A5B6 114 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 NPIPA2E9PIF3 369 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 NPIPA3F8WFD2 350 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 SYT7O43581 403 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 SULT1C4O75897 302 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 ZBTB7AO95365 584 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 GIPP09681 153 aaPredicted RBP10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 DPEP1P16444 411 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 TRHRP34981 398 aaPredicted RBP10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 PCGF2P35227 344 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 WDR5P61964 334 aaKnown RBP10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 ACSM3Q53FZ2 586 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 CD300LGQ6UXG3 332 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 GDPD4Q6W3E5 623 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 SLC7A6Q92536 515 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 TFGQ92734 400 aaPredicted RBP10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 MR1Q95460 341 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 EMID1Q96A84 441 aaPredicted RBP10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 ZCCHC4Q9H5U6 513 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 METTL7AQ9H8H3 244 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 ZNF395Q9H8N7 513 aaPredicted RBP10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 FBRSL1Q9HCM7 1045 aaKnown RBP10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 GAR1Q9NY12 217 aaKnown RBP10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 SLC27A5Q9Y2P5 690 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 ETV7Q9Y603 341 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 ANKRD66B4E2M5 251 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 ARNTLO00327 626 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 SAP18O00422 153 aaKnown RBP10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 DVL2O14641 736 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 B4GALT5O43286 388 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 FGF4P08620 206 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 TMEM225BP0DP42 221 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 JUNBP17275 347 aaPredicted RBP10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 CPT2P23786 658 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 SSTR2P30874 369 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 OR1D2P34982 312 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 ERVK-21P61565 698 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 EMX1Q04741 257 aaPredicted RBP10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 TNK1Q13470 666 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 GPR50Q13585 617 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 HNF4GQ14541 408 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 DCAF12L1Q5VU92 463 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 CPZQ66K79 652 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 HBMQ6B0K9 141 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 SPATC1Q76KD6 591 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 NPAS4Q8IUM7 802 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 SLC35F2Q8IXU6 374 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 LSMEM2Q8N112 164 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 BPIFB2Q8N4F0 458 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 IL17RDQ8NFM7 739 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 TFAP2BQ92481 460 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 ZBTB20Q9HC78 741 aaPredicted RBP10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 SDR39U1Q9NRG7 319 aaPredicted RBP10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 SURF4O15260 269 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 EPHX1P07099 455 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 SHMT2P34897 504 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 SELENOWP63302 87 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 EEF1A2Q05639 463 aaKnown RBP10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 ZNF691Q5VV52 312 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 STEAP4Q687X5 459 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 INTS5Q6P9B9 1019 aaKnown RBP10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 OPN5Q6U736 354 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 NHLRC2Q8NBF2 726 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 FBXO22Q8NEZ5 403 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 OR51T1Q8NGJ9 327 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 OR51A7Q8NH64 312 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 SPRYD4Q8WW59 207 aaPredicted RBP10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 SYNPO2LQ9H987 977 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 BABAM2Q9NXR7 383 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 TAC3Q9UHF0 121 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 BTNL2Q9UIR0 455 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 PCDHB10Q9UN67 800 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 USP32Q8NFA0 1604 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 TCRBV7S3A2A0A539 114 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 CST3P01034 146 aaPredicted RBP10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 MMP3P08254 477 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 ITGB5P18084 799 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 ENDOGQ14249 297 aaKnown RBP10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 RBM39Q14498 530 aaKnown RBP10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 ADAM5Q6NVV9 412 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 PIWIL3Q7Z3Z3 882 aaKnown RBP10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 DEFB128Q7Z7B8 93 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 SERPINA11Q86U17 422 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 PDZD3Q86UT5 571 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 OR5D14Q8NGL3 314 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 OR14C36Q8NHC7 312 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 GGHQ92820 318 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 SPTSSAQ969W0 71 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 NSUN3Q9H649 340 aaKnown RBP10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 PCDHGA6Q9Y5G7 932 aa10.64□□□□□ -0.71
LIMCH1-217ENST00000512946 TMEM72A0PK05 275 aa10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 C6P13671 934 aa10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 GABRA5P31644 462 aa10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 EEF1A1P68104 462 aaKnown RBP10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 SP2Q02086 613 aa10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 ARHGAP40Q5TG30 622 aa10.63□□□□□ -0.71
LIMCH1-217ENST00000512946 EEF1A1P5Q5VTE0 462 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms