RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 TMED4Q7Z7H5 227 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 BCL7CQ8WUZ0 217 aaPredicted RBP7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 TMEM239Q8WW34 195 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 KIAA1143Q96AT1 154 aaPredicted RBP7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 SLC25A36Q96CQ1 311 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 NXPE2Q96DL1 559 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 C5orf34Q96MH7 638 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 DGAT2Q96PD7 388 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 MS4A4EQ96PG1 132 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 PITHD1Q9GZP4 211 aaPredicted RBP7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 ELL3Q9HB65 397 aaPredicted RBP7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 SLC52A3Q9NQ40 469 aa7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 NDRG2Q9UN36 371 aaKnown RBP7.91□□□□□ -1.14
LIMCH1-216ENST00000512820 C17orf113A0A1B0GUU1 675 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 B4GALT2O60909 372 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 TRAPPC2P0DI81 140 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 TRAPPC2BP0DI82 140 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 ARSBP15848 533 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 GIFP27352 417 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 GRPRP30550 384 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 ETV5P41161 510 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 TGM4P49221 684 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 ETV1P50549 477 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 CTBP2P56545 445 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 ASAH1Q13510 395 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 ZNF234Q14588 700 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 MTFR2Q6P444 385 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 ZNF550Q7Z398 422 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 COMMD7Q86VX2 200 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 KIF18BQ86Y91 864 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 OR2M4Q96R27 311 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 PRR14Q9BWN1 585 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 C1QTNF2Q9BXJ5 285 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 PIGUQ9H490 435 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 AK6Q9Y3D8 172 aaKnown RBP7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 CCL27Q9Y4X3 112 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 MCM3APO60318 1980 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 FMO6PO60774 539 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 RP2O75695 350 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 RBBP9O75884 186 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 TFPIP10646 304 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 CCL5P13501 91 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 RRAS2P62070 204 aaPredicted RBP7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 RPS15AP62244 130 aaKnown RBP7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 GBX1Q14549 363 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 HNRNPA1L2Q32P51 320 aaKnown RBP7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 HES5Q5TA89 166 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 ZCCHC12Q6PEW1 402 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 RNF165Q6ZSG1 346 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 MEPCEQ7L2J0 689 aaKnown RBP7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 CCDC190Q86UF4 302 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 FAM109AQ8N4B1 249 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 SFXN5Q8TD22 340 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 THAP4Q8WY91 577 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 SMPDL3BQ92485 455 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 NSMAFQ92636 917 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 RBCK1Q9BYM8 510 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 B3GNT4Q9C0J1 378 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 GLIPR2Q9H4G4 154 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 CREBZFQ9NS37 354 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 NDUFB11Q9NX14 153 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 COQ3Q9NZJ6 369 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 LAMP5Q9UJQ1 280 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 A0A1B0GVI7 797 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 KANTRA0A1W2PQU2 76 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 PLPP1O14494 284 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 ADH1BP00325 375 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 INHBBP09529 407 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 CHRNB1P11230 501 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 GDI1P31150 447 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 MMP12P39900 470 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 SNTA1Q13424 505 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 SCGB2B2Q4G0G5 96 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 KLHL24Q6TFL4 600 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 TMPRSS12Q86WS5 348 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 LRRC56Q8IYG6 542 aaPredicted RBP7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 SDR16C5Q8N3Y7 309 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 OR8S1Q8NH09 359 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 CDS1Q92903 461 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 ZMYND19Q96E35 227 aaPredicted RBP7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 TRPV4Q9HBA0 871 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 GALNT9Q9HCQ5 603 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 NANSQ9NR45 359 aa7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 RGS17Q9UGC6 210 aaPredicted RBP7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 YARS2Q9Y2Z4 477 aaKnown RBP7.9□□□□□ -1.14
LIMCH1-216ENST00000512820 TRDV1A0A1B0GX56 115 aa7.9□□□□□ -1.15
LIMCH1-216ENST00000512820 A0A1W2PQU0 124 aa7.9□□□□□ -1.15
LIMCH1-216ENST00000512820 SMLR1H3BR10 107 aa7.9□□□□□ -1.15
LIMCH1-216ENST00000512820 SMAD9O15198 467 aaKnown RBP7.9□□□□□ -1.15
LIMCH1-216ENST00000512820 CREBL2O60519 120 aaPredicted RBP7.9□□□□□ -1.15
LIMCH1-216ENST00000512820 ZNF823P16415 610 aa7.9□□□□□ -1.15
LIMCH1-216ENST00000512820 EPCAMP16422 314 aa7.9□□□□□ -1.15
LIMCH1-216ENST00000512820 ADH7P40394 386 aa7.9□□□□□ -1.15
LIMCH1-216ENST00000512820 RPS21P63220 83 aaKnown RBP7.9□□□□□ -1.15
LIMCH1-216ENST00000512820 BAK1Q16611 211 aa7.9□□□□□ -1.15
LIMCH1-216ENST00000512820 ZMAT1Q5H9K5 638 aa7.9□□□□□ -1.15
LIMCH1-216ENST00000512820 TCTN3Q6NUS6 607 aa7.9□□□□□ -1.15
LIMCH1-216ENST00000512820 C10orf111Q8N326 155 aa7.9□□□□□ -1.15
LIMCH1-216ENST00000512820 FAM26EQ8N5C1 309 aa7.9□□□□□ -1.15
LIMCH1-216ENST00000512820 C12orf76Q8N812 135 aaPredicted RBP7.9□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms