RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 DTD1Q8TEA8 209 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 SELENOMQ8WWX9 145 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 CLCC1Q96S66 551 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 ATG101Q9BSB4 218 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 LRRN3Q9H3W5 708 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 CRTAC1Q9NQ79 661 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 THSD1Q9NS62 852 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 OPN4Q9UHM6 478 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 OR14I1A6ND48 311 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 HMSDA8MTL9 139 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 E7EQ34 232 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 GOSR2O14653 212 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 PRAF2O60831 178 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 C6P13671 934 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 SDC1P18827 310 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 SCNN1AP37088 669 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 HCCSP53701 268 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 H2BFSP57053 126 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 SYT14P1Q58G82 188 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 HBMQ6B0K9 141 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 ADAM5Q6NVV9 412 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 APOOLQ6UXV4 268 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 MOB3CQ70IA8 216 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 DPPA4Q7L190 304 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 OR6K3Q8NGY3 331 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 NTAN1Q96AB6 310 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 TMEM138Q9NPI0 162 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 TLR8Q9NR97 1041 aaKnown RBP11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 DOCK5Q9H7D0 1870 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 PIKFYVEQ9Y2I7 2098 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 SHANK3Q9BYB0 1731 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 MANBAO00462 879 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 SMAD9O15198 467 aaKnown RBP11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 YIF1AO95070 293 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 SDHAP31040 664 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 SREBF2Q12772 1141 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 ILF3Q12906 894 aaKnown RBP eCLIP11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 XKR6Q5GH73 641 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 SLC30A6Q6NXT4 461 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 PGBD2Q6P3X8 592 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 SPICQ8N5J4 248 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 CERKQ8TCT0 537 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 ZFP42Q96MM3 310 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 TEFMQ96QE5 360 aaKnown RBP11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 ARHGAP9Q9BRR9 750 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 FAIM2Q9BWQ8 316 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 ACPTQ9BZG2 426 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 SYNDIG1Q9H7V2 258 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 GPN1Q9HCN4 374 aaPredicted RBP11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 MEPEQ9NQ76 525 aaPredicted RBP11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 WWOXQ9NZC7 414 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 PCDHB9Q9Y5E1 797 aa11.31□□□□□ -0.6
LIMCH1-213ENST00000511496 C9orf170A2RU37 121 aa11.3□□□□□ -0.6
LIMCH1-213ENST00000511496 MED6O75586 246 aa11.3□□□□□ -0.6
LIMCH1-213ENST00000511496 F2P00734 622 aa11.3□□□□□ -0.6
LIMCH1-213ENST00000511496 HOXB9P17482 250 aaPredicted RBP11.3□□□□□ -0.6
LIMCH1-213ENST00000511496 STAT5AP42229 794 aa11.3□□□□□ -0.6
LIMCH1-213ENST00000511496 HTR5AP47898 357 aa11.3□□□□□ -0.6
LIMCH1-213ENST00000511496 WDR5P61964 334 aaKnown RBP11.3□□□□□ -0.6
LIMCH1-213ENST00000511496 IHHQ14623 411 aa11.3□□□□□ -0.6
LIMCH1-213ENST00000511496 ATXN7L3Q14CW9 347 aaPredicted RBP11.3□□□□□ -0.6
LIMCH1-213ENST00000511496 SF1Q15637 639 aaKnown RBP11.3□□□□□ -0.6
LIMCH1-213ENST00000511496 HEPHL1Q6MZM0 1159 aa11.3□□□□□ -0.6
LIMCH1-213ENST00000511496 LINGO2Q7L985 606 aa11.3□□□□□ -0.6
LIMCH1-213ENST00000511496 CARFQ8N187 725 aa11.3□□□□□ -0.6
LIMCH1-213ENST00000511496 RNF175Q8N4F7 328 aa11.3□□□□□ -0.6
LIMCH1-213ENST00000511496 B3GALNT2Q8NCR0 500 aa11.3□□□□□ -0.6
LIMCH1-213ENST00000511496 OR51Q1Q8NH59 317 aa11.3□□□□□ -0.6
LIMCH1-213ENST00000511496 PAQR8Q8TEZ7 354 aa11.3□□□□□ -0.6
LIMCH1-213ENST00000511496 C3orf49Q96BT1 292 aa11.3□□□□□ -0.6
LIMCH1-213ENST00000511496 ZBED3Q96IU2 234 aaPredicted RBP11.3□□□□□ -0.6
LIMCH1-213ENST00000511496 CNTNAP3BQ96NU0 1288 aa11.3□□□□□ -0.6
LIMCH1-213ENST00000511496 ORAI3Q9BRQ5 295 aa11.3□□□□□ -0.6
LIMCH1-213ENST00000511496 WNT5BQ9H1J7 359 aa11.3□□□□□ -0.6
LIMCH1-213ENST00000511496 SLC25A51Q9H1U9 297 aa11.3□□□□□ -0.6
LIMCH1-213ENST00000511496 SUV39H2Q9H5I1 410 aa11.3□□□□□ -0.6
LIMCH1-213ENST00000511496 TCF7L1Q9HCS4 588 aa11.3□□□□□ -0.6
LIMCH1-213ENST00000511496 CTPS2Q9NRF8 586 aa11.3□□□□□ -0.6
LIMCH1-213ENST00000511496 BACE2Q9Y5Z0 518 aa11.3□□□□□ -0.6
LIMCH1-213ENST00000511496 A0A1B0GUH1 482 aa11.3□□□□□ -0.6
LIMCH1-213ENST00000511496 RPP40O75818 363 aaKnown RBP11.3□□□□□ -0.6
LIMCH1-213ENST00000511496 INSRRP14616 1297 aa11.3□□□□□ -0.6
LIMCH1-213ENST00000511496 ABOP16442 354 aa11.3□□□□□ -0.6
LIMCH1-213ENST00000511496 MPGP29372 298 aa11.3□□□□□ -0.6
LIMCH1-213ENST00000511496 CCR7P32248 378 aa11.3□□□□□ -0.6
LIMCH1-213ENST00000511496 SLC10A7Q0GE19 358 aa11.3□□□□□ -0.6
LIMCH1-213ENST00000511496 TRAM1Q15629 374 aa11.3□□□□□ -0.6
LIMCH1-213ENST00000511496 RPL13AP3Q6NVV1 102 aa11.3□□□□□ -0.6
LIMCH1-213ENST00000511496 CD200R1LQ6Q8B3 271 aa11.3□□□□□ -0.6
LIMCH1-213ENST00000511496 GLDNQ6ZMI3 551 aaPredicted RBP11.3□□□□□ -0.6
LIMCH1-213ENST00000511496 MON1AQ86VX9 555 aa11.3□□□□□ -0.6
LIMCH1-213ENST00000511496 SYT12Q8IV01 421 aa11.3□□□□□ -0.6
LIMCH1-213ENST00000511496 CCDC116Q8IYX3 515 aa11.3□□□□□ -0.6
LIMCH1-213ENST00000511496 ZNF511Q8NB15 262 aa11.3□□□□□ -0.6
LIMCH1-213ENST00000511496 OR4F15Q8NGB8 312 aa11.3□□□□□ -0.6
LIMCH1-213ENST00000511496 NFKBIDQ8NI38 313 aa11.3□□□□□ -0.6
LIMCH1-213ENST00000511496 APIPQ96GX9 242 aa11.3□□□□□ -0.6
LIMCH1-213ENST00000511496 HS6ST2Q96MM7 605 aa11.3□□□□□ -0.6
LIMCH1-213ENST00000511496 ZNF582Q96NG8 517 aaPredicted RBP11.3□□□□□ -0.6
LIMCH1-213ENST00000511496 VSX1Q9NZR4 365 aaPredicted RBP11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms