RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, human

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRCA1-223	ENST00000494123	FRRS1	Q6ZNA5	592 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	SULF2	Q8IWU5	870 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	SLC15A3	Q8IY34	581 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	PGAM4	Q8N0Y7	254 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	ZNF619	Q8N2I2	560 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	METTL25	Q8N6Q8	603 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	C11orf65	Q8NCR3	313 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	OR4C3	Q8NH37	302 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	FBXO27	Q8NI29	283 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	FAM173A	Q9BQD7	235 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	CMTM6	Q9NX76	183 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	ADA2	Q9NZK5	511 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	ANGPT4	Q9Y264	503 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	PCDHGA10	Q9Y5H3	936 aa		13.35	□□□□□ -0.27
BRCA1-223	ENST00000494123	ANKRD33B	A6NCL7	494 aa		13.34	□□□□□ -0.27
BRCA1-223	ENST00000494123	KIAA0513	O60268	411 aa		13.34	□□□□□ -0.27
BRCA1-223	ENST00000494123	FADS1	O60427	444 aa		13.34	□□□□□ -0.27
BRCA1-223	ENST00000494123	SNX4	O95219	450 aa		13.34	□□□□□ -0.27
BRCA1-223	ENST00000494123	OXSR1	O95747	527 aa	Predicted RBP	13.34	□□□□□ -0.27
BRCA1-223	ENST00000494123	NGFR	P08138	427 aa		13.34	□□□□□ -0.27
BRCA1-223	ENST00000494123	GUSB	P08236	651 aa		13.34	□□□□□ -0.27
BRCA1-223	ENST00000494123	TBXA2R	P21731	343 aa		13.34	□□□□□ -0.27
BRCA1-223	ENST00000494123	DNASE1L1	P49184	302 aa		13.34	□□□□□ -0.27
BRCA1-223	ENST00000494123	MEOX1	P50221	254 aa		13.34	□□□□□ -0.27
BRCA1-223	ENST00000494123	ATP12A	P54707	1039 aa		13.34	□□□□□ -0.27
BRCA1-223	ENST00000494123	RPS26P11	Q5JNZ5	115 aa	Predicted RBP	13.34	□□□□□ -0.27
BRCA1-223	ENST00000494123	REEP3	Q6NUK4	255 aa		13.34	□□□□□ -0.27
BRCA1-223	ENST00000494123	TMEM81	Q6P7N7	255 aa		13.34	□□□□□ -0.27
BRCA1-223	ENST00000494123	NET1	Q7Z628	596 aa	Predicted RBP	13.34	□□□□□ -0.27
BRCA1-223	ENST00000494123	PACS2	Q86VP3	889 aa		13.34	□□□□□ -0.27
BRCA1-223	ENST00000494123	IFNE	Q86WN2	208 aa		13.34	□□□□□ -0.27
BRCA1-223	ENST00000494123	DEFB107A	Q8IZN7	70 aa		13.34	□□□□□ -0.27
BRCA1-223	ENST00000494123	BBS10	Q8TAM1	723 aa		13.34	□□□□□ -0.27
BRCA1-223	ENST00000494123	JSRP1	Q96MG2	331 aa	Predicted RBP	13.34	□□□□□ -0.27
BRCA1-223	ENST00000494123	TREX2	Q9BQ50	279 aa	Predicted RBP	13.34	□□□□□ -0.27
BRCA1-223	ENST00000494123	ANGPTL4	Q9BY76	406 aa		13.34	□□□□□ -0.27
BRCA1-223	ENST00000494123	SLC38A1	Q9H2H9	487 aa		13.34	□□□□□ -0.27
BRCA1-223	ENST00000494123	RUBCNL	Q9H714	662 aa		13.34	□□□□□ -0.27
BRCA1-223	ENST00000494123	GALNT9	Q9HCQ5	603 aa		13.34	□□□□□ -0.27
BRCA1-223	ENST00000494123	SDHAF3	Q9NRP4	125 aa		13.34	□□□□□ -0.27
BRCA1-223	ENST00000494123	TLN1	Q9Y490	2541 aa	Known RBP	13.34	□□□□□ -0.27
BRCA1-223	ENST00000494123		A0A0G2JMM0	328 aa		13.33	□□□□□ -0.28
BRCA1-223	ENST00000494123		A0A0G2JPF8	293 aa		13.33	□□□□□ -0.28
BRCA1-223	ENST00000494123		A0A1W2PPB8	328 aa		13.33	□□□□□ -0.28
BRCA1-223	ENST00000494123		A0A1W2PRS3	328 aa		13.33	□□□□□ -0.28
BRCA1-223	ENST00000494123	KIR3DP1	A8MWS1	328 aa		13.33	□□□□□ -0.28
BRCA1-223	ENST00000494123	HNRNPCL2	B2RXH8	293 aa		13.33	□□□□□ -0.28
BRCA1-223	ENST00000494123	HNRNPCL3	B7ZW38	293 aa		13.33	□□□□□ -0.28
BRCA1-223	ENST00000494123		H3BNH8	94 aa		13.33	□□□□□ -0.28
BRCA1-223	ENST00000494123	NME4	O00746	187 aa		13.33	□□□□□ -0.28
BRCA1-223	ENST00000494123	HNRNPCL1	O60812	293 aa	Known RBP	13.33	□□□□□ -0.28
BRCA1-223	ENST00000494123	RASAL1	O95294	804 aa		13.33	□□□□□ -0.28
BRCA1-223	ENST00000494123	HNRNPCL4	P0DMR1	293 aa		13.33	□□□□□ -0.28
BRCA1-223	ENST00000494123	LIPE	Q05469	1076 aa		13.33	□□□□□ -0.28
BRCA1-223	ENST00000494123	NFATC3	Q12968	1075 aa		13.33	□□□□□ -0.28
BRCA1-223	ENST00000494123	MAPK11	Q15759	364 aa		13.33	□□□□□ -0.28
BRCA1-223	ENST00000494123	ADRM1	Q16186	407 aa		13.33	□□□□□ -0.28
BRCA1-223	ENST00000494123	PDZK1	Q5T2W1	519 aa		13.33	□□□□□ -0.28
BRCA1-223	ENST00000494123	PRAMEF8	Q5VWM4	474 aa		13.33	□□□□□ -0.28
BRCA1-223	ENST00000494123	PRAMEF7	Q5VXH5	474 aa		13.33	□□□□□ -0.28
BRCA1-223	ENST00000494123	ERICH5	Q6P6B1	374 aa		13.33	□□□□□ -0.28
BRCA1-223	ENST00000494123	RINL	Q6ZS11	566 aa		13.33	□□□□□ -0.28
BRCA1-223	ENST00000494123	PNPLA5	Q7Z6Z6	429 aa	Predicted RBP	13.33	□□□□□ -0.28
BRCA1-223	ENST00000494123	MARCH3	Q86UD3	253 aa		13.33	□□□□□ -0.28
BRCA1-223	ENST00000494123	PTOV1	Q86YD1	416 aa		13.33	□□□□□ -0.28
BRCA1-223	ENST00000494123	SLC30A8	Q8IWU4	369 aa		13.33	□□□□□ -0.28
BRCA1-223	ENST00000494123	PEX5L	Q8IYB4	626 aa		13.33	□□□□□ -0.28
BRCA1-223	ENST00000494123	ZZZ3	Q8IYH5	903 aa		13.33	□□□□□ -0.28
BRCA1-223	ENST00000494123	POGLUT1	Q8NBL1	392 aa		13.33	□□□□□ -0.28
BRCA1-223	ENST00000494123	RBM15B	Q8NDT2	890 aa	Known RBP	13.33	□□□□□ -0.28
BRCA1-223	ENST00000494123	HIPK4	Q8NE63	616 aa		13.33	□□□□□ -0.28
BRCA1-223	ENST00000494123	OR2T12	Q8NG77	320 aa		13.33	□□□□□ -0.28
BRCA1-223	ENST00000494123	OR2M7	Q8NG81	312 aa		13.33	□□□□□ -0.28
BRCA1-223	ENST00000494123	PMM1	Q92871	262 aa		13.33	□□□□□ -0.28
BRCA1-223	ENST00000494123	REXO5	Q96IC2	774 aa	Known RBP	13.33	□□□□□ -0.28
BRCA1-223	ENST00000494123	ZNF597	Q96LX8	424 aa		13.33	□□□□□ -0.28
BRCA1-223	ENST00000494123	ZNF583	Q96ND8	569 aa		13.33	□□□□□ -0.28
BRCA1-223	ENST00000494123	SAP130	Q9H0E3	1048 aa		13.33	□□□□□ -0.28
BRCA1-223	ENST00000494123	ALG2	Q9H553	416 aa		13.33	□□□□□ -0.28
BRCA1-223	ENST00000494123	MTHFD2L	Q9H903	347 aa	Predicted RBP	13.33	□□□□□ -0.28
BRCA1-223	ENST00000494123	DEPP	Q9NTK1	212 aa		13.33	□□□□□ -0.28
BRCA1-223	ENST00000494123	BOK	Q9UMX3	212 aa	Predicted RBP	13.33	□□□□□ -0.28
BRCA1-223	ENST00000494123	WIF1	Q9Y5W5	379 aa		13.33	□□□□□ -0.28
BRCA1-223	ENST00000494123	ATRX	P46100	2492 aa		13.33	□□□□□ -0.28
BRCA1-223	ENST00000494123	IGSF10	Q6WRI0	2623 aa		13.32	□□□□□ -0.28
BRCA1-223	ENST00000494123	C2orf72	A6NCS6	295 aa		13.32	□□□□□ -0.28
BRCA1-223	ENST00000494123	FAM220BP	B1ANY3	271 aa		13.32	□□□□□ -0.28
BRCA1-223	ENST00000494123	ALG1L2	C9J202	215 aa		13.32	□□□□□ -0.28
BRCA1-223	ENST00000494123	EBAG9	O00559	213 aa		13.32	□□□□□ -0.28
BRCA1-223	ENST00000494123	NDUFB5	O43674	189 aa		13.32	□□□□□ -0.28
BRCA1-223	ENST00000494123	UGT2B17	O75795	530 aa		13.32	□□□□□ -0.28
BRCA1-223	ENST00000494123	ZIC2	O95409	532 aa	Predicted RBP	13.32	□□□□□ -0.28
BRCA1-223	ENST00000494123	EEFSEC	P57772	596 aa	Known RBP	13.32	□□□□□ -0.28
BRCA1-223	ENST00000494123	PLGLB1	Q02325	96 aa		13.32	□□□□□ -0.28
BRCA1-223	ENST00000494123	INA	Q16352	499 aa		13.32	□□□□□ -0.28
BRCA1-223	ENST00000494123	VMAC	Q2NL98	169 aa		13.32	□□□□□ -0.28
BRCA1-223	ENST00000494123	COLEC12	Q5KU26	742 aa		13.32	□□□□□ -0.28
BRCA1-223	ENST00000494123	INTS11	Q5TA45	600 aa	Known RBP	13.32	□□□□□ -0.28
BRCA1-223	ENST00000494123	RPUSD3	Q6P087	351 aa	Known RBP	13.32	□□□□□ -0.28
BRCA1-223	ENST00000494123	C6orf89	Q6UWU4	347 aa		13.32	□□□□□ -0.28

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