RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 COQ9O75208 318 aa19.6■□□□□ 0.73
CCDC88B-208ENST00000492980 CSO75390 466 aaKnown RBP19.6■□□□□ 0.73
CCDC88B-208ENST00000492980 CKMT1AP12532 417 aa19.6■□□□□ 0.73
CCDC88B-208ENST00000492980 GNSP15586 552 aa19.6■□□□□ 0.73
CCDC88B-208ENST00000492980 GABRA4P48169 554 aa19.6■□□□□ 0.73
CCDC88B-208ENST00000492980 RNF144AP50876 292 aaPredicted RBP19.6■□□□□ 0.73
CCDC88B-208ENST00000492980 SSX1Q16384 188 aa19.6■□□□□ 0.73
CCDC88B-208ENST00000492980 LRIT3Q3SXY7 679 aa19.6■□□□□ 0.73
CCDC88B-208ENST00000492980 S100ZQ8WXG8 99 aa19.6■□□□□ 0.73
CCDC88B-208ENST00000492980 PEX11GQ96HA9 241 aa19.6■□□□□ 0.73
CCDC88B-208ENST00000492980 PRSS27Q9BQR3 290 aa19.6■□□□□ 0.73
CCDC88B-208ENST00000492980 WDR12Q9GZL7 423 aaKnown RBP19.6■□□□□ 0.73
CCDC88B-208ENST00000492980 POLR2J2Q9GZM3 115 aaKnown RBP19.6■□□□□ 0.73
CCDC88B-208ENST00000492980 MIR1-1HGQ9H1L0 117 aa19.6■□□□□ 0.73
CCDC88B-208ENST00000492980 RNF167Q9H6Y7 350 aa19.6■□□□□ 0.73
CCDC88B-208ENST00000492980 TESQ9UGI8 421 aaKnown RBP19.6■□□□□ 0.73
CCDC88B-208ENST00000492980 B3GNT3Q9Y2A9 372 aa19.6■□□□□ 0.73
CCDC88B-208ENST00000492980 CCRL2O00421 344 aa19.6■□□□□ 0.73
CCDC88B-208ENST00000492980 ARHGAP33O14559 1287 aa19.6■□□□□ 0.73
CCDC88B-208ENST00000492980 GKN3PP0CG01 181 aa19.6■□□□□ 0.73
CCDC88B-208ENST00000492980 SLC13A2Q13183 592 aa19.6■□□□□ 0.73
CCDC88B-208ENST00000492980 TMED1Q13445 227 aa19.6■□□□□ 0.73
CCDC88B-208ENST00000492980 Q6ZNX1 250 aa19.6■□□□□ 0.73
CCDC88B-208ENST00000492980 ZAR1Q86SH2 424 aa19.6■□□□□ 0.73
CCDC88B-208ENST00000492980 C11orf74Q86VG3 221 aa19.6■□□□□ 0.73
CCDC88B-208ENST00000492980 MFSD4AQ8N468 514 aa19.6■□□□□ 0.73
CCDC88B-208ENST00000492980 OR52I1Q8NGK6 324 aa19.6■□□□□ 0.73
CCDC88B-208ENST00000492980 PMM1Q92871 262 aa19.6■□□□□ 0.73
CCDC88B-208ENST00000492980 ZNF285Q96NJ3 590 aa19.6■□□□□ 0.73
CCDC88B-208ENST00000492980 CHCHD6Q9BRQ6 235 aa19.6■□□□□ 0.73
CCDC88B-208ENST00000492980 CENPOQ9BU64 300 aa19.6■□□□□ 0.73
CCDC88B-208ENST00000492980 POLE3Q9NRF9 147 aa19.6■□□□□ 0.73
CCDC88B-208ENST00000492980 TRAPPC13A5PLN9 417 aa19.59■□□□□ 0.73
CCDC88B-208ENST00000492980 SCG5P05408 212 aa19.59■□□□□ 0.73
CCDC88B-208ENST00000492980 SKP1P63208 163 aa19.59■□□□□ 0.73
CCDC88B-208ENST00000492980 MAT1AQ00266 395 aaKnown RBP19.59■□□□□ 0.73
CCDC88B-208ENST00000492980 RPL6Q02878 288 aaKnown RBP19.59■□□□□ 0.73
CCDC88B-208ENST00000492980 CLEC12AQ5QGZ9 265 aa19.59■□□□□ 0.73
CCDC88B-208ENST00000492980 SLC36A4Q6YBV0 504 aa19.59■□□□□ 0.73
CCDC88B-208ENST00000492980 BTLAQ7Z6A9 289 aa19.59■□□□□ 0.73
CCDC88B-208ENST00000492980 NANOGP1Q8N7R0 232 aa19.59■□□□□ 0.73
CCDC88B-208ENST00000492980 KBTBD8Q8NFY9 601 aa19.59■□□□□ 0.73
CCDC88B-208ENST00000492980 OR4Q3Q8NH05 313 aa19.59■□□□□ 0.73
CCDC88B-208ENST00000492980 OSTF1Q92882 214 aa19.59■□□□□ 0.73
CCDC88B-208ENST00000492980 SLC38A2Q96QD8 506 aa19.59■□□□□ 0.73
CCDC88B-208ENST00000492980 LMF2Q9BU23 707 aaKnown RBP19.59■□□□□ 0.73
CCDC88B-208ENST00000492980 MND1Q9BWT6 205 aa19.59■□□□□ 0.73
CCDC88B-208ENST00000492980 IL20Q9NYY1 176 aa19.59■□□□□ 0.73
CCDC88B-208ENST00000492980 DIMT1Q9UNQ2 313 aaKnown RBP19.59■□□□□ 0.73
CCDC88B-208ENST00000492980 TNRC18O15417 2968 aaPredicted RBP19.59■□□□□ 0.73
CCDC88B-208ENST00000492980 AQP9O43315 295 aa19.58■□□□□ 0.73
CCDC88B-208ENST00000492980 HRO43593 1189 aa19.58■□□□□ 0.73
CCDC88B-208ENST00000492980 KCNK2O95069 426 aa19.58■□□□□ 0.73
CCDC88B-208ENST00000492980 LYPD3O95274 346 aa19.58■□□□□ 0.73
CCDC88B-208ENST00000492980 GAS1P54826 345 aa19.58■□□□□ 0.73
CCDC88B-208ENST00000492980 GFERP55789 205 aa19.58■□□□□ 0.73
CCDC88B-208ENST00000492980 PLAURQ03405 335 aa19.58■□□□□ 0.73
CCDC88B-208ENST00000492980 DEFB133Q30KQ1 61 aa19.58■□□□□ 0.73
CCDC88B-208ENST00000492980 ZNF620Q6ZNG0 422 aa19.58■□□□□ 0.73
CCDC88B-208ENST00000492980 DACH2Q96NX9 599 aa19.58■□□□□ 0.73
CCDC88B-208ENST00000492980 FOLH1BQ9HBA9 442 aa19.58■□□□□ 0.73
CCDC88B-208ENST00000492980 CAPN10Q9HC96 672 aa19.58■□□□□ 0.73
CCDC88B-208ENST00000492980 HHATLQ9HCP6 504 aa19.58■□□□□ 0.73
CCDC88B-208ENST00000492980 NLGN3Q9NZ94 848 aa19.58■□□□□ 0.73
CCDC88B-208ENST00000492980 GPR52Q9Y2T5 361 aa19.58■□□□□ 0.73
CCDC88B-208ENST00000492980 METTL15A6NJ78 407 aa19.58■□□□□ 0.72
CCDC88B-208ENST00000492980 PRODHO43272 600 aa19.58■□□□□ 0.72
CCDC88B-208ENST00000492980 CTNSO60931 367 aa19.58■□□□□ 0.72
CCDC88B-208ENST00000492980 CDC123O75794 336 aaPredicted RBP19.58■□□□□ 0.72
CCDC88B-208ENST00000492980 NSA2O95478 260 aaKnown RBP19.58■□□□□ 0.72
CCDC88B-208ENST00000492980 BMP4P12644 408 aa19.58■□□□□ 0.72
CCDC88B-208ENST00000492980 PTNP21246 168 aa19.58■□□□□ 0.72
CCDC88B-208ENST00000492980 MLLT3P42568 568 aaPredicted RBP19.58■□□□□ 0.72
CCDC88B-208ENST00000492980 NXPH1P58417 271 aa19.58■□□□□ 0.72
CCDC88B-208ENST00000492980 STARD6P59095 220 aa19.58■□□□□ 0.72
CCDC88B-208ENST00000492980 IGLV3-21P80748 117 aaPredicted RBP19.58■□□□□ 0.72
CCDC88B-208ENST00000492980 PSG6Q00889 435 aa19.58■□□□□ 0.72
CCDC88B-208ENST00000492980 FAM53BQ14153 422 aa19.58■□□□□ 0.72
CCDC88B-208ENST00000492980 SPHARQ15513 63 aa19.58■□□□□ 0.72
CCDC88B-208ENST00000492980 OR1Q1Q15612 314 aa19.58■□□□□ 0.72
CCDC88B-208ENST00000492980 PAQR6Q6TCH4 344 aa19.58■□□□□ 0.72
CCDC88B-208ENST00000492980 WDR88Q6ZMY6 472 aa19.58■□□□□ 0.72
CCDC88B-208ENST00000492980 LSRQ86X29 649 aaPredicted RBP19.58■□□□□ 0.72
CCDC88B-208ENST00000492980 PROKR2Q8NFJ6 384 aa19.58■□□□□ 0.72
CCDC88B-208ENST00000492980 MCFD2Q8NI22 146 aa19.58■□□□□ 0.72
CCDC88B-208ENST00000492980 RIT1Q92963 219 aa19.58■□□□□ 0.72
CCDC88B-208ENST00000492980 TGM7Q96PF1 710 aa19.58■□□□□ 0.72
CCDC88B-208ENST00000492980 PRRG3Q9BZD7 231 aa19.58■□□□□ 0.72
CCDC88B-208ENST00000492980 RACGAP1Q9H0H5 632 aa19.58■□□□□ 0.72
CCDC88B-208ENST00000492980 PLCL2Q9UPR0 1127 aa19.58■□□□□ 0.72
CCDC88B-208ENST00000492980 MRPS33Q9Y291 106 aaKnown RBP19.58■□□□□ 0.72
CCDC88B-208ENST00000492980 HYKKA2RU49 373 aa19.57■□□□□ 0.72
CCDC88B-208ENST00000492980 MAGEB3O15480 346 aa19.57■□□□□ 0.72
CCDC88B-208ENST00000492980 FMO6PO60774 539 aa19.57■□□□□ 0.72
CCDC88B-208ENST00000492980 RAB36O95755 333 aa19.57■□□□□ 0.72
CCDC88B-208ENST00000492980 ZNF12P17014 697 aa19.57■□□□□ 0.72
CCDC88B-208ENST00000492980 EMDP50402 254 aa19.57■□□□□ 0.72
CCDC88B-208ENST00000492980 STX4Q12846 297 aa19.57■□□□□ 0.72
CCDC88B-208ENST00000492980 COL13A1Q5TAT6 717 aaPredicted RBP19.57■□□□□ 0.72
CCDC88B-208ENST00000492980 NIPAL1Q6NVV3 410 aa19.57■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms