RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 FAM53BQ14153 422 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 ERV3-1Q14264 604 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 NDUFA9Q16795 377 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 EXOC3L2Q2M3D2 409 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 PRICKLE4Q2TBC4 344 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 SYT6Q5T7P8 510 aaPredicted RBP11.32□□□□□ -0.6
HDAC6-230ENST00000488543 GARNL3Q5VVW2 1013 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 HMGN2P46Q86SG4 172 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 RBM45Q8IUH3 476 aaKnown RBP11.32□□□□□ -0.6
HDAC6-230ENST00000488543 SLC16A11Q8NCK7 471 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 FAM83FQ8NEG4 500 aaPredicted RBP11.32□□□□□ -0.6
HDAC6-230ENST00000488543 ZNF675Q8TD23 568 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 NAT6Q93015 286 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 ZHX1-C8orf76Q96EF9 292 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 ZNF354BQ96LW1 612 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 NIPSNAP1Q9BPW8 284 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 C6orf62Q9GZU0 229 aaPredicted RBP11.32□□□□□ -0.6
HDAC6-230ENST00000488543 DHCR7Q9UBM7 475 aaKnown RBP11.32□□□□□ -0.6
HDAC6-230ENST00000488543 SEC14L3Q9UDX4 400 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 B3GNT3Q9Y2A9 372 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 MAU2Q9Y6X3 613 aa11.32□□□□□ -0.6
HDAC6-230ENST00000488543 A0A087WV62 115 aa11.31□□□□□ -0.6
HDAC6-230ENST00000488543 PLOD3O60568 738 aa11.31□□□□□ -0.6
HDAC6-230ENST00000488543 OR2B3O76000 313 aa11.31□□□□□ -0.6
HDAC6-230ENST00000488543 IFI6P09912 130 aa11.31□□□□□ -0.6
HDAC6-230ENST00000488543 RNH1P13489 461 aaKnown RBP11.31□□□□□ -0.6
HDAC6-230ENST00000488543 CD59P13987 128 aa11.31□□□□□ -0.6
HDAC6-230ENST00000488543 NT5EP21589 574 aa11.31□□□□□ -0.6
HDAC6-230ENST00000488543 ALAS2P22557 587 aa11.31□□□□□ -0.6
HDAC6-230ENST00000488543 GTF2E2P29084 291 aaKnown RBP11.31□□□□□ -0.6
HDAC6-230ENST00000488543 GRK6P43250 576 aa11.31□□□□□ -0.6
HDAC6-230ENST00000488543 HMGA2P52926 109 aa11.31□□□□□ -0.6
HDAC6-230ENST00000488543 GANABQ14697 944 aaKnown RBP11.31□□□□□ -0.6
HDAC6-230ENST00000488543 DGUOKQ16854 277 aa11.31□□□□□ -0.6
HDAC6-230ENST00000488543 FAM214AQ32MH5 1076 aa11.31□□□□□ -0.6
HDAC6-230ENST00000488543 GPAT3Q53EU6 434 aa11.31□□□□□ -0.6
HDAC6-230ENST00000488543 KRT73Q86Y46 540 aa11.31□□□□□ -0.6
HDAC6-230ENST00000488543 TRNT1Q96Q11 434 aaKnown RBP11.31□□□□□ -0.6
HDAC6-230ENST00000488543 COPS4Q9BT78 406 aa11.31□□□□□ -0.6
HDAC6-230ENST00000488543 DCSTAMPQ9H295 470 aa11.31□□□□□ -0.6
HDAC6-230ENST00000488543 ENAMQ9NRM1 1142 aa11.31□□□□□ -0.6
HDAC6-230ENST00000488543 CLCA2Q9UQC9 943 aa11.31□□□□□ -0.6
HDAC6-230ENST00000488543 PCDHGB1Q9Y5G3 927 aa11.31□□□□□ -0.6
HDAC6-230ENST00000488543 CLDN16Q9Y5I7 305 aa11.31□□□□□ -0.6
HDAC6-230ENST00000488543 CDC123O75794 336 aaPredicted RBP11.31□□□□□ -0.6
HDAC6-230ENST00000488543 LDOC1O95751 146 aaPredicted RBP11.31□□□□□ -0.6
HDAC6-230ENST00000488543 STSP08842 583 aa11.31□□□□□ -0.6
HDAC6-230ENST00000488543 SPNP16150 400 aa11.31□□□□□ -0.6
HDAC6-230ENST00000488543 TGM1P22735 817 aa11.31□□□□□ -0.6
HDAC6-230ENST00000488543 CD40LGP29965 261 aa11.31□□□□□ -0.6
HDAC6-230ENST00000488543 CHRNEQ04844 493 aa11.31□□□□□ -0.6
HDAC6-230ENST00000488543 SQSTM1Q13501 440 aa11.31□□□□□ -0.6
HDAC6-230ENST00000488543 GNA13Q14344 377 aa11.31□□□□□ -0.6
HDAC6-230ENST00000488543 DUSP5Q16690 384 aa11.31□□□□□ -0.6
HDAC6-230ENST00000488543 TCTE1Q5JU00 501 aa11.31□□□□□ -0.6
HDAC6-230ENST00000488543 TCTN3Q6NUS6 607 aa11.31□□□□□ -0.6
HDAC6-230ENST00000488543 TTLL10Q6ZVT0 673 aa11.31□□□□□ -0.6
HDAC6-230ENST00000488543 PRSS42Q7Z5A4 293 aa11.31□□□□□ -0.6
HDAC6-230ENST00000488543 CARFQ8N187 725 aa11.31□□□□□ -0.6
HDAC6-230ENST00000488543 MCFD2Q8NI22 146 aa11.31□□□□□ -0.6
HDAC6-230ENST00000488543 ZDHHC19Q8WVZ1 309 aaPredicted RBP11.31□□□□□ -0.6
HDAC6-230ENST00000488543 RASSF5Q8WWW0 418 aa11.31□□□□□ -0.6
HDAC6-230ENST00000488543 CDS1Q92903 461 aa11.31□□□□□ -0.6
HDAC6-230ENST00000488543 CTHRC1Q96CG8 243 aa11.31□□□□□ -0.6
HDAC6-230ENST00000488543 PEX11GQ96HA9 241 aa11.31□□□□□ -0.6
HDAC6-230ENST00000488543 DHRS1Q96LJ7 313 aa11.31□□□□□ -0.6
HDAC6-230ENST00000488543 WDR12Q9GZL7 423 aaKnown RBP11.31□□□□□ -0.6
HDAC6-230ENST00000488543 QRSL1Q9H0R6 528 aaKnown RBP11.31□□□□□ -0.6
HDAC6-230ENST00000488543 DSN1Q9H410 356 aa11.31□□□□□ -0.6
HDAC6-230ENST00000488543 ZNF768Q9H5H4 540 aaKnown RBP11.31□□□□□ -0.6
HDAC6-230ENST00000488543 FGF21Q9NSA1 209 aa11.31□□□□□ -0.6
HDAC6-230ENST00000488543 SEMA4GQ9NTN9 838 aa11.31□□□□□ -0.6
HDAC6-230ENST00000488543 LIPT1Q9Y234 373 aa11.31□□□□□ -0.6
HDAC6-230ENST00000488543 SLC35E2P0CK97 266 aa11.3□□□□□ -0.6
HDAC6-230ENST00000488543 HSMCR30P0CW71 290 aa11.3□□□□□ -0.6
HDAC6-230ENST00000488543 CLK1P49759 484 aaKnown RBP11.3□□□□□ -0.6
HDAC6-230ENST00000488543 PDX1P52945 283 aa11.3□□□□□ -0.6
HDAC6-230ENST00000488543 IGLV3-21P80748 117 aaPredicted RBP11.3□□□□□ -0.6
HDAC6-230ENST00000488543 DUSP8Q13202 625 aa11.3□□□□□ -0.6
HDAC6-230ENST00000488543 MICAQ29983 383 aa11.3□□□□□ -0.6
HDAC6-230ENST00000488543 CLIP4Q8N3C7 705 aa11.3□□□□□ -0.6
HDAC6-230ENST00000488543 OR10G2Q8NGC3 310 aa11.3□□□□□ -0.6
HDAC6-230ENST00000488543 OR4D9Q8NGE8 314 aa11.3□□□□□ -0.6
HDAC6-230ENST00000488543 VANGL1Q8TAA9 524 aaPredicted RBP11.3□□□□□ -0.6
HDAC6-230ENST00000488543 ADAMTS15Q8TE58 950 aa11.3□□□□□ -0.6
HDAC6-230ENST00000488543 GTPBP3Q969Y2 492 aaKnown RBP11.3□□□□□ -0.6
HDAC6-230ENST00000488543 ZG16BQ96DA0 208 aa11.3□□□□□ -0.6
HDAC6-230ENST00000488543 MMABQ96EY8 250 aaPredicted RBP11.3□□□□□ -0.6
HDAC6-230ENST00000488543 CCDC74BQ96LY2 380 aa11.3□□□□□ -0.6
HDAC6-230ENST00000488543 PSD2Q9BQI7 771 aa11.3□□□□□ -0.6
HDAC6-230ENST00000488543 OR51E2Q9H255 320 aa11.3□□□□□ -0.6
HDAC6-230ENST00000488543 PARD6AQ9NPB6 346 aa11.3□□□□□ -0.6
HDAC6-230ENST00000488543 ZNF229Q9UJW7 825 aa11.3□□□□□ -0.6
HDAC6-230ENST00000488543 M0R3H8 397 aa11.3□□□□□ -0.6
HDAC6-230ENST00000488543 PCDH17O14917 1159 aa11.3□□□□□ -0.6
HDAC6-230ENST00000488543 TBX1O43435 398 aa11.3□□□□□ -0.6
HDAC6-230ENST00000488543 SLITRK5O94991 958 aa11.3□□□□□ -0.6
HDAC6-230ENST00000488543 CBX7O95931 251 aa11.3□□□□□ -0.6
HDAC6-230ENST00000488543 ZNF883P0CG24 379 aa11.3□□□□□ -0.6
HDAC6-230ENST00000488543 MAP3K8P41279 467 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms