RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 FBXO25Q8TCJ0 367 aa13.67□□□□□ -0.22
MCF2L-228ENST00000487354 C12orf49Q9H741 205 aa13.67□□□□□ -0.22
MCF2L-228ENST00000487354 LRTM1Q9HBL6 345 aa13.67□□□□□ -0.22
MCF2L-228ENST00000487354 SLC35C2Q9NQQ7 365 aa13.67□□□□□ -0.22
MCF2L-228ENST00000487354 TAS2R9Q9NYW1 312 aa13.67□□□□□ -0.22
MCF2L-228ENST00000487354 VDAC3Q9Y277 283 aa13.67□□□□□ -0.22
MCF2L-228ENST00000487354 A0A0J9YW62 118 aa13.66□□□□□ -0.22
MCF2L-228ENST00000487354 DPRXA6NFQ7 191 aa13.66□□□□□ -0.22
MCF2L-228ENST00000487354 MYO1GB0I1T2 1018 aa13.66□□□□□ -0.22
MCF2L-228ENST00000487354 GMFGO60234 142 aa13.66□□□□□ -0.22
MCF2L-228ENST00000487354 PCDH7O60245 1069 aa13.66□□□□□ -0.22
MCF2L-228ENST00000487354 PLGP00747 810 aaPredicted RBP13.66□□□□□ -0.22
MCF2L-228ENST00000487354 OPN1LWP04000 364 aa13.66□□□□□ -0.22
MCF2L-228ENST00000487354 SERPINB8P50452 374 aa13.66□□□□□ -0.22
MCF2L-228ENST00000487354 PRR5P85299 388 aa13.66□□□□□ -0.22
MCF2L-228ENST00000487354 BSPH1Q075Z2 132 aa13.66□□□□□ -0.22
MCF2L-228ENST00000487354 FAPQ12884 760 aa13.66□□□□□ -0.22
MCF2L-228ENST00000487354 SH2D4BQ5SQS7 431 aa13.66□□□□□ -0.22
MCF2L-228ENST00000487354 PPP4R4Q6NUP7 873 aa13.66□□□□□ -0.22
MCF2L-228ENST00000487354 KLC3Q6P597 504 aa13.66□□□□□ -0.22
MCF2L-228ENST00000487354 FIGNL1Q6PIW4 674 aa13.66□□□□□ -0.22
MCF2L-228ENST00000487354 TFAP2EQ6VUC0 442 aa13.66□□□□□ -0.22
MCF2L-228ENST00000487354 DTX2Q86UW9 622 aa13.66□□□□□ -0.22
MCF2L-228ENST00000487354 GTPBP8Q8N3Z3 284 aaPredicted RBP13.66□□□□□ -0.22
MCF2L-228ENST00000487354 TMEM151AQ8N4L1 468 aa13.66□□□□□ -0.22
MCF2L-228ENST00000487354 C16orf78Q8WTQ4 265 aa13.66□□□□□ -0.22
MCF2L-228ENST00000487354 GTPBP3Q969Y2 492 aaKnown RBP13.66□□□□□ -0.22
MCF2L-228ENST00000487354 MRRFQ96E11 262 aaKnown RBP13.66□□□□□ -0.22
MCF2L-228ENST00000487354 C1QTNF3Q9BXJ4 246 aa13.66□□□□□ -0.22
MCF2L-228ENST00000487354 ACPTQ9BZG2 426 aa13.66□□□□□ -0.22
MCF2L-228ENST00000487354 KCNF1Q9H3M0 494 aa13.66□□□□□ -0.22
MCF2L-228ENST00000487354 SDHAF3Q9NRP4 125 aa13.66□□□□□ -0.22
MCF2L-228ENST00000487354 VPS29Q9UBQ0 182 aa13.66□□□□□ -0.22
MCF2L-228ENST00000487354 C19orf53Q9UNZ5 99 aaPredicted RBP13.66□□□□□ -0.22
MCF2L-228ENST00000487354 SAR1BQ9Y6B6 198 aa13.66□□□□□ -0.22
MCF2L-228ENST00000487354 A0A087WV62 115 aa13.65□□□□□ -0.22
MCF2L-228ENST00000487354 FAM187AA6NFU0 413 aa13.65□□□□□ -0.22
MCF2L-228ENST00000487354 UPK1AO00322 258 aa13.65□□□□□ -0.22
MCF2L-228ENST00000487354 MANBAO00462 879 aa13.65□□□□□ -0.22
MCF2L-228ENST00000487354 TNFSF11O14788 317 aa13.65□□□□□ -0.22
MCF2L-228ENST00000487354 OR4F21O95013 312 aa13.65□□□□□ -0.22
MCF2L-228ENST00000487354 UTS2O95399 124 aa13.65□□□□□ -0.22
MCF2L-228ENST00000487354 ESRRBO95718 433 aa13.65□□□□□ -0.22
MCF2L-228ENST00000487354 ANGPTL1O95841 491 aa13.65□□□□□ -0.22
MCF2L-228ENST00000487354 OTCP00480 354 aa13.65□□□□□ -0.22
MCF2L-228ENST00000487354 CD3EP07766 207 aa13.65□□□□□ -0.22
MCF2L-228ENST00000487354 SHC1P29353 583 aa13.65□□□□□ -0.22
MCF2L-228ENST00000487354 TYK2P29597 1187 aa13.65□□□□□ -0.22
MCF2L-228ENST00000487354 HTR6P50406 440 aa13.65□□□□□ -0.22
MCF2L-228ENST00000487354 SRSF2Q01130 221 aaKnown RBP13.65□□□□□ -0.22
MCF2L-228ENST00000487354 TMEM249Q2WGJ8 235 aa13.65□□□□□ -0.22
MCF2L-228ENST00000487354 GRAMD1BQ3KR37 738 aa13.65□□□□□ -0.22
MCF2L-228ENST00000487354 ALKBH2Q6NS38 261 aa13.65□□□□□ -0.22
MCF2L-228ENST00000487354 TMEM107Q6UX40 140 aa13.65□□□□□ -0.22
MCF2L-228ENST00000487354 NUFIP2Q7Z417 695 aaKnown RBP13.65□□□□□ -0.22
MCF2L-228ENST00000487354 CCDC25Q86WR0 208 aa13.65□□□□□ -0.22
MCF2L-228ENST00000487354 ZNF619Q8N2I2 560 aa13.65□□□□□ -0.22
MCF2L-228ENST00000487354 OR2L13Q8N349 312 aa13.65□□□□□ -0.22
MCF2L-228ENST00000487354 STEAP2Q8NFT2 490 aa13.65□□□□□ -0.22
MCF2L-228ENST00000487354 OR10H5Q8NGA6 315 aa13.65□□□□□ -0.22
MCF2L-228ENST00000487354 POC1BQ8TC44 478 aa13.65□□□□□ -0.22
MCF2L-228ENST00000487354 RNF128Q8TEB7 428 aa13.65□□□□□ -0.22
MCF2L-228ENST00000487354 APIPQ96GX9 242 aa13.65□□□□□ -0.22
MCF2L-228ENST00000487354 TACO1Q9BSH4 297 aaKnown RBP13.65□□□□□ -0.22
MCF2L-228ENST00000487354 LMF2Q9BU23 707 aaKnown RBP13.65□□□□□ -0.22
MCF2L-228ENST00000487354 PRRG4Q9BZD6 226 aa13.65□□□□□ -0.22
MCF2L-228ENST00000487354 GRIP2Q9C0E4 1043 aa13.65□□□□□ -0.22
MCF2L-228ENST00000487354 VPS11Q9H270 941 aa13.65□□□□□ -0.22
MCF2L-228ENST00000487354 GLRX2Q9NS18 164 aa13.65□□□□□ -0.22
MCF2L-228ENST00000487354 MCTS1Q9ULC4 181 aaKnown RBP13.65□□□□□ -0.22
MCF2L-228ENST00000487354 SNX6Q9UNH7 406 aa13.65□□□□□ -0.22
MCF2L-228ENST00000487354 A0A1W2PP18 115 aa13.64□□□□□ -0.23
MCF2L-228ENST00000487354 GXYLT2A0PJZ3 443 aa13.64□□□□□ -0.23
MCF2L-228ENST00000487354 C7orf72A4D263 438 aa13.64□□□□□ -0.23
MCF2L-228ENST00000487354 A8MT66 165 aa13.64□□□□□ -0.23
MCF2L-228ENST00000487354 SHISA9B4DS77 424 aa13.64□□□□□ -0.23
MCF2L-228ENST00000487354 ZSCAN12O43309 604 aa13.64□□□□□ -0.23
MCF2L-228ENST00000487354 RAMP1O60894 148 aa13.64□□□□□ -0.23
MCF2L-228ENST00000487354 COQ9O75208 318 aa13.64□□□□□ -0.23
MCF2L-228ENST00000487354 TUBBP07437 444 aa13.64□□□□□ -0.23
MCF2L-228ENST00000487354 HSD3B1P14060 373 aa13.64□□□□□ -0.23
MCF2L-228ENST00000487354 HSD3B2P26439 372 aa13.64□□□□□ -0.23
MCF2L-228ENST00000487354 ADH6P28332 368 aa13.64□□□□□ -0.23
MCF2L-228ENST00000487354 PLTPP55058 493 aa13.64□□□□□ -0.23
MCF2L-228ENST00000487354 CSTF3Q12996 717 aaKnown RBP13.64□□□□□ -0.23
MCF2L-228ENST00000487354 DECR1Q16698 335 aa13.64□□□□□ -0.23
MCF2L-228ENST00000487354 PLPPR5Q32ZL2 321 aa13.64□□□□□ -0.23
MCF2L-228ENST00000487354 SFRP5Q5T4F7 317 aa13.64□□□□□ -0.23
MCF2L-228ENST00000487354 SAMD14Q8IZD0 417 aaPredicted RBP13.64□□□□□ -0.23
MCF2L-228ENST00000487354 OR2V1Q8NHB1 315 aa13.64□□□□□ -0.23
MCF2L-228ENST00000487354 PIWIL2Q8TC59 973 aaKnown RBP13.64□□□□□ -0.23
MCF2L-228ENST00000487354 ABHD3Q8WU67 409 aa13.64□□□□□ -0.23
MCF2L-228ENST00000487354 SLC9A6Q92581 669 aa13.64□□□□□ -0.23
MCF2L-228ENST00000487354 HOXB13Q92826 284 aaPredicted RBP13.64□□□□□ -0.23
MCF2L-228ENST00000487354 C19orf24Q9BVV8 132 aa13.64□□□□□ -0.23
MCF2L-228ENST00000487354 EBPLQ9BY08 206 aa13.64□□□□□ -0.23
MCF2L-228ENST00000487354 TMEM185BQ9H7F4 350 aa13.64□□□□□ -0.23
MCF2L-228ENST00000487354 FBXO34Q9NWN3 711 aa13.64□□□□□ -0.23
MCF2L-228ENST00000487354 TMEM160Q9NX00 188 aa13.64□□□□□ -0.23
MCF2L-228ENST00000487354 DMGDHQ9UI17 866 aaKnown RBP13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms