RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 RMND5BQ96G75 393 aaPredicted RBP13.15□□□□□ -0.3
CUX1-209ENST00000487284 FEVQ99581 238 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 SPSB2Q99619 263 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 FUZQ9BT04 418 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 GABARAPL3Q9BY60 117 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 TGIF2Q9GZN2 237 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 NMNAT1Q9HAN9 279 aaPredicted RBP13.15□□□□□ -0.3
CUX1-209ENST00000487284 ERVK-19Q9WJR5 959 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 MYRFQ9Y2G1 1151 aa13.15□□□□□ -0.3
CUX1-209ENST00000487284 ASPMQ8IZT6 3477 aa13.14□□□□□ -0.31
CUX1-209ENST00000487284 LOC100130705A0A1B0GUX0 176 aa13.14□□□□□ -0.31
CUX1-209ENST00000487284 TCRBV16S1A1N1A0A5B0 115 aa13.14□□□□□ -0.31
CUX1-209ENST00000487284 GXYLT2A0PJZ3 443 aa13.14□□□□□ -0.31
CUX1-209ENST00000487284 TRIM64A6NGJ6 449 aa13.14□□□□□ -0.31
CUX1-209ENST00000487284 VSTM2BA6NLU5 285 aa13.14□□□□□ -0.31
CUX1-209ENST00000487284 CDRT15L2A8MXV6 281 aa13.14□□□□□ -0.31
CUX1-209ENST00000487284 C9J4A7 227 aa13.14□□□□□ -0.31
CUX1-209ENST00000487284 PCDH17O14917 1159 aa13.14□□□□□ -0.31
CUX1-209ENST00000487284 BRINP1O60477 761 aa13.14□□□□□ -0.31
CUX1-209ENST00000487284 SMNDC1O75940 238 aaKnown RBP eCLIP13.14□□□□□ -0.31
CUX1-209ENST00000487284 CLPSP04118 112 aa13.14□□□□□ -0.31
CUX1-209ENST00000487284 DBIP07108 87 aaKnown RBP13.14□□□□□ -0.31
CUX1-209ENST00000487284 CBLP22681 906 aa13.14□□□□□ -0.31
CUX1-209ENST00000487284 ELAVL4P26378 380 aaKnown RBP13.14□□□□□ -0.31
CUX1-209ENST00000487284 RBMS1P29558 406 aaKnown RBP13.14□□□□□ -0.31
CUX1-209ENST00000487284 RPS6KA3P51812 740 aa13.14□□□□□ -0.31
CUX1-209ENST00000487284 GTF2A1P52655 376 aaPredicted RBP13.14□□□□□ -0.31
CUX1-209ENST00000487284 APOFQ13790 326 aa13.14□□□□□ -0.31
CUX1-209ENST00000487284 LARS2Q15031 903 aaKnown RBP13.14□□□□□ -0.31
CUX1-209ENST00000487284 KCTD21Q4G0X4 260 aa13.14□□□□□ -0.31
CUX1-209ENST00000487284 EIPR1Q53HC9 387 aa13.14□□□□□ -0.31
CUX1-209ENST00000487284 ISLR2Q6UXK2 745 aa13.14□□□□□ -0.31
CUX1-209ENST00000487284 C8orf59Q8N0T1 100 aaPredicted RBP13.14□□□□□ -0.31
CUX1-209ENST00000487284 TAGAPQ8N103 731 aa13.14□□□□□ -0.31
CUX1-209ENST00000487284 OR7G1Q8NGA0 311 aa13.14□□□□□ -0.31
CUX1-209ENST00000487284 PTPMT1Q8WUK0 201 aaPredicted RBP13.14□□□□□ -0.31
CUX1-209ENST00000487284 NR4A3Q92570 626 aa13.14□□□□□ -0.31
CUX1-209ENST00000487284 TSLPQ969D9 159 aa13.14□□□□□ -0.31
CUX1-209ENST00000487284 PRRC1Q96M27 445 aa13.14□□□□□ -0.31
CUX1-209ENST00000487284 ALPK1Q96QP1 1244 aa13.14□□□□□ -0.31
CUX1-209ENST00000487284 CNPPD1Q9BV87 410 aa13.14□□□□□ -0.31
CUX1-209ENST00000487284 GRIP2Q9C0E4 1043 aa13.14□□□□□ -0.31
CUX1-209ENST00000487284 B3GNT4Q9C0J1 378 aa13.14□□□□□ -0.31
CUX1-209ENST00000487284 VN1R1Q9GZP7 353 aa13.14□□□□□ -0.31
CUX1-209ENST00000487284 SLC26A1Q9H2B4 701 aa13.14□□□□□ -0.31
CUX1-209ENST00000487284 CACYBPQ9HB71 228 aaKnown RBP13.14□□□□□ -0.31
CUX1-209ENST00000487284 ASCL3Q9NQ33 180 aa13.14□□□□□ -0.31
CUX1-209ENST00000487284 C14orf105Q9NVL8 296 aa13.14□□□□□ -0.31
CUX1-209ENST00000487284 FBXO34Q9NWN3 711 aa13.14□□□□□ -0.31
CUX1-209ENST00000487284 KLHL28Q9NXS3 571 aa13.14□□□□□ -0.31
CUX1-209ENST00000487284 RHCGQ9UBD6 479 aa13.14□□□□□ -0.31
CUX1-209ENST00000487284 SLC13A4Q9UKG4 626 aa13.14□□□□□ -0.31
CUX1-209ENST00000487284 PADI1Q9ULC6 663 aa13.14□□□□□ -0.31
CUX1-209ENST00000487284 MKL2Q9ULH7 1088 aa13.14□□□□□ -0.31
CUX1-209ENST00000487284 ZNF232Q9UNY5 417 aa13.14□□□□□ -0.31
CUX1-209ENST00000487284 DTX4Q9Y2E6 619 aa13.14□□□□□ -0.31
CUX1-209ENST00000487284 EXPH5Q8NEV8 1989 aa13.14□□□□□ -0.31
CUX1-209ENST00000487284 CEP295Q9C0D2 2601 aa13.13□□□□□ -0.31
CUX1-209ENST00000487284 TRBV4-1A0A0J9YWV2 114 aa13.13□□□□□ -0.31
CUX1-209ENST00000487284 C17orf105B2RV13 164 aa13.13□□□□□ -0.31
CUX1-209ENST00000487284 UGT2B11O75310 529 aa13.13□□□□□ -0.31
CUX1-209ENST00000487284 CCNB2O95067 398 aa13.13□□□□□ -0.31
CUX1-209ENST00000487284 KCNK2O95069 426 aa13.13□□□□□ -0.31
CUX1-209ENST00000487284 OXSR1O95747 527 aaPredicted RBP13.13□□□□□ -0.31
CUX1-209ENST00000487284 CCNYL3P0C7X3 344 aa13.13□□□□□ -0.31
CUX1-209ENST00000487284 TRHRP34981 398 aaPredicted RBP13.13□□□□□ -0.31
CUX1-209ENST00000487284 POLR2IP36954 125 aaKnown RBP13.13□□□□□ -0.31
CUX1-209ENST00000487284 PGDP52209 483 aa13.13□□□□□ -0.31
CUX1-209ENST00000487284 EEF1A1P68104 462 aaKnown RBP13.13□□□□□ -0.31
CUX1-209ENST00000487284 KEAP1Q14145 624 aa13.13□□□□□ -0.31
CUX1-209ENST00000487284 NCF4Q15080 339 aa13.13□□□□□ -0.31
CUX1-209ENST00000487284 GPR68Q15743 365 aa13.13□□□□□ -0.31
CUX1-209ENST00000487284 RNF220Q5VTB9 566 aa13.13□□□□□ -0.31
CUX1-209ENST00000487284 FAM69BQ5VUD6 431 aa13.13□□□□□ -0.31
CUX1-209ENST00000487284 ZNF691Q5VV52 312 aa13.13□□□□□ -0.31
CUX1-209ENST00000487284 ZNF770Q6IQ21 691 aaPredicted RBP13.13□□□□□ -0.31
CUX1-209ENST00000487284 TTC33Q6PID6 262 aaPredicted RBP13.13□□□□□ -0.31
CUX1-209ENST00000487284 ZNF836Q6ZNA1 936 aa13.13□□□□□ -0.31
CUX1-209ENST00000487284 THAP5Q7Z6K1 395 aa13.13□□□□□ -0.31
CUX1-209ENST00000487284 TSPYL5Q86VY4 417 aaPredicted RBP13.13□□□□□ -0.31
CUX1-209ENST00000487284 C16orf52Q8NHV5 167 aa13.13□□□□□ -0.31
CUX1-209ENST00000487284 PITX2Q99697 317 aa13.13□□□□□ -0.31
CUX1-209ENST00000487284 OR10A5Q9H207 317 aa13.13□□□□□ -0.31
CUX1-209ENST00000487284 RIBC2Q9H4K1 309 aa13.13□□□□□ -0.31
CUX1-209ENST00000487284 RLIMQ9NVW2 624 aa13.13□□□□□ -0.31
CUX1-209ENST00000487284 GPN3Q9UHW5 284 aaPredicted RBP13.13□□□□□ -0.31
CUX1-209ENST00000487284 KCNE5Q9UJ90 142 aa13.13□□□□□ -0.31
CUX1-209ENST00000487284 KLK13Q9UKR3 277 aa13.13□□□□□ -0.31
CUX1-209ENST00000487284 POFUT2Q9Y2G5 429 aa13.13□□□□□ -0.31
CUX1-209ENST00000487284 GPR55Q9Y2T6 319 aaPredicted RBP13.13□□□□□ -0.31
CUX1-209ENST00000487284 CENPVL1A0A0U1RR11 272 aa13.12□□□□□ -0.31
CUX1-209ENST00000487284 A0A1W2PRQ8 180 aa13.12□□□□□ -0.31
CUX1-209ENST00000487284 DPPA5A6NC42 116 aa13.12□□□□□ -0.31
CUX1-209ENST00000487284 SYNDIG1LA6NDD5 238 aa13.12□□□□□ -0.31
CUX1-209ENST00000487284 FAAHO00519 579 aa13.12□□□□□ -0.31
CUX1-209ENST00000487284 BCKDKO14874 412 aa13.12□□□□□ -0.31
CUX1-209ENST00000487284 UGT2B17O75795 530 aa13.12□□□□□ -0.31
CUX1-209ENST00000487284 CT45A8P0DMV1 189 aa13.12□□□□□ -0.31
CUX1-209ENST00000487284 CT45A9P0DMV2 189 aa13.12□□□□□ -0.31
CUX1-209ENST00000487284 IL7RP16871 459 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms