RNA–Protein interactions for RNA: ENST00000486641.2

CCDC171-208, Transcript of coiled-coil domain containing 171, humanhuman

TSL 1 (best)

Gene CCDC171, Length 2,322 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-208ENST00000486641 TAF12Q16514 161 aa9.97□□□□□ -0.81
CCDC171-208ENST00000486641 SYPL1Q16563 259 aa9.97□□□□□ -0.81
CCDC171-208ENST00000486641 CTXN3Q4LDR2 81 aa9.97□□□□□ -0.81
CCDC171-208ENST00000486641 B3GNTL1Q67FW5 361 aaPredicted RBP9.97□□□□□ -0.81
CCDC171-208ENST00000486641 SLC30A6Q6NXT4 461 aa9.97□□□□□ -0.81
CCDC171-208ENST00000486641 SLCO4C1Q6ZQN7 724 aa9.97□□□□□ -0.81
CCDC171-208ENST00000486641 TMUB2Q71RG4 321 aa9.97□□□□□ -0.81
CCDC171-208ENST00000486641 TMPRSS11BQ86T26 416 aa9.97□□□□□ -0.81
CCDC171-208ENST00000486641 MCATQ8IVS2 390 aaKnown RBP9.97□□□□□ -0.81
CCDC171-208ENST00000486641 PDZD9Q8IXQ8 264 aa9.97□□□□□ -0.81
CCDC171-208ENST00000486641 HS6ST3Q8IZP7 471 aa9.97□□□□□ -0.81
CCDC171-208ENST00000486641 SIRT6Q8N6T7 355 aa9.97□□□□□ -0.81
CCDC171-208ENST00000486641 OR6T1Q8NGN1 323 aa9.97□□□□□ -0.81
CCDC171-208ENST00000486641 ECHDC3Q96DC8 303 aa9.97□□□□□ -0.81
CCDC171-208ENST00000486641 FCRL4Q96PJ5 515 aa9.97□□□□□ -0.81
CCDC171-208ENST00000486641 ZNF607Q96SK3 696 aa9.97□□□□□ -0.81
CCDC171-208ENST00000486641 TIMP4Q99727 224 aa9.97□□□□□ -0.81
CCDC171-208ENST00000486641 C19orf43Q9BQ61 176 aa9.97□□□□□ -0.81
CCDC171-208ENST00000486641 LRRN3Q9H3W5 708 aa9.97□□□□□ -0.81
CCDC171-208ENST00000486641 ESRP2Q9H6T0 727 aaKnown RBP9.97□□□□□ -0.81
CCDC171-208ENST00000486641 ZNF275Q9NSD4 429 aaPredicted RBP9.97□□□□□ -0.81
CCDC171-208ENST00000486641 TEX10Q9NXF1 929 aaPredicted RBP9.97□□□□□ -0.81
CCDC171-208ENST00000486641 BABAM2Q9NXR7 383 aa9.97□□□□□ -0.81
CCDC171-208ENST00000486641 COA4Q9NYJ1 87 aa9.97□□□□□ -0.81
CCDC171-208ENST00000486641 CNIH4Q9P003 139 aa9.97□□□□□ -0.81
CCDC171-208ENST00000486641 PLXND1Q9Y4D7 1925 aa9.97□□□□□ -0.81
CCDC171-208ENST00000486641 A0A087WUU8 490 aa9.96□□□□□ -0.81
CCDC171-208ENST00000486641 PRSS44E7EML9 344 aa9.96□□□□□ -0.81
CCDC171-208ENST00000486641 F8W036 122 aa9.96□□□□□ -0.81
CCDC171-208ENST00000486641 CACNB4O00305 520 aaPredicted RBP9.96□□□□□ -0.81
CCDC171-208ENST00000486641 SOCS6O14544 535 aa9.96□□□□□ -0.81
CCDC171-208ENST00000486641 SURF4O15260 269 aa9.96□□□□□ -0.81
CCDC171-208ENST00000486641 SDC3O75056 442 aa9.96□□□□□ -0.81
CCDC171-208ENST00000486641 RP2O75695 350 aa9.96□□□□□ -0.81
CCDC171-208ENST00000486641 SLC2A10O95528 541 aa9.96□□□□□ -0.81
CCDC171-208ENST00000486641 SLC16A8O95907 504 aa9.96□□□□□ -0.81
CCDC171-208ENST00000486641 EPPINO95925 133 aa9.96□□□□□ -0.81
CCDC171-208ENST00000486641 SNRPBP14678 240 aaKnown RBP9.96□□□□□ -0.81
CCDC171-208ENST00000486641 TRIM23P36406 574 aa9.96□□□□□ -0.81
CCDC171-208ENST00000486641 GDNFP39905 211 aa9.96□□□□□ -0.81
CCDC171-208ENST00000486641 PSMA6P60900 246 aaKnown RBP9.96□□□□□ -0.81
CCDC171-208ENST00000486641 POLR2GP62487 172 aaKnown RBP eCLIP9.96□□□□□ -0.81
CCDC171-208ENST00000486641 S100A12P80511 92 aa9.96□□□□□ -0.81
CCDC171-208ENST00000486641 PTSQ03393 145 aa9.96□□□□□ -0.81
CCDC171-208ENST00000486641 MELKQ14680 651 aa9.96□□□□□ -0.81
CCDC171-208ENST00000486641 METTL11BQ5VVY1 283 aa9.96□□□□□ -0.81
CCDC171-208ENST00000486641 TRMT11Q7Z4G4 463 aaKnown RBP9.96□□□□□ -0.81
CCDC171-208ENST00000486641 C6orf120Q7Z4R8 191 aa9.96□□□□□ -0.81
CCDC171-208ENST00000486641 CEACAM19Q7Z692 300 aa9.96□□□□□ -0.81
CCDC171-208ENST00000486641 METTL3Q86U44 580 aaKnown RBP9.96□□□□□ -0.81
CCDC171-208ENST00000486641 IZUMO1Q8IYV9 350 aa9.96□□□□□ -0.81
CCDC171-208ENST00000486641 APCDD1Q8J025 514 aa9.96□□□□□ -0.81
CCDC171-208ENST00000486641 LINC00471Q8N535 108 aa9.96□□□□□ -0.81
CCDC171-208ENST00000486641 SPICQ8N5J4 248 aa9.96□□□□□ -0.81
CCDC171-208ENST00000486641 TBC1D19Q8N5T2 526 aa9.96□□□□□ -0.81
CCDC171-208ENST00000486641 FAM71CQ8NEG0 241 aa9.96□□□□□ -0.81
CCDC171-208ENST00000486641 OR4Q3Q8NH05 313 aa9.96□□□□□ -0.81
CCDC171-208ENST00000486641 ZDHHC1Q8WTX9 485 aa9.96□□□□□ -0.81
CCDC171-208ENST00000486641 ADAM2Q99965 735 aa9.96□□□□□ -0.81
CCDC171-208ENST00000486641 TREX2Q9BQ50 279 aaPredicted RBP9.96□□□□□ -0.81
CCDC171-208ENST00000486641 ORAI3Q9BRQ5 295 aa9.96□□□□□ -0.81
CCDC171-208ENST00000486641 MIEF1Q9NQG6 463 aa9.96□□□□□ -0.81
CCDC171-208ENST00000486641 EXOSC3Q9NQT5 275 aaKnown RBP9.96□□□□□ -0.81
CCDC171-208ENST00000486641 KLHL1Q9NR64 748 aa9.96□□□□□ -0.81
CCDC171-208ENST00000486641 ADARB2Q9NS39 739 aaKnown RBP9.96□□□□□ -0.81
CCDC171-208ENST00000486641 TDP1Q9NUW8 608 aa9.96□□□□□ -0.81
CCDC171-208ENST00000486641 OR2M5A3KFT3 312 aa9.96□□□□□ -0.82
CCDC171-208ENST00000486641 TMEM202A6NGA9 273 aa9.96□□□□□ -0.82
CCDC171-208ENST00000486641 PGRMC2O15173 223 aa9.96□□□□□ -0.82
CCDC171-208ENST00000486641 ARPC5O15511 151 aa9.96□□□□□ -0.82
CCDC171-208ENST00000486641 PRAF2O60831 178 aa9.96□□□□□ -0.82
CCDC171-208ENST00000486641 STC2O76061 302 aa9.96□□□□□ -0.82
CCDC171-208ENST00000486641 VNN2O95498 520 aa9.96□□□□□ -0.82
CCDC171-208ENST00000486641 HPP00738 406 aa9.96□□□□□ -0.82
CCDC171-208ENST00000486641 HMGN1P05114 100 aa9.96□□□□□ -0.82
CCDC171-208ENST00000486641 GIPP09681 153 aaPredicted RBP9.96□□□□□ -0.82
CCDC171-208ENST00000486641 PSMB1P20618 241 aaKnown RBP9.96□□□□□ -0.82
CCDC171-208ENST00000486641 GJA5P36382 358 aa9.96□□□□□ -0.82
CCDC171-208ENST00000486641 CCR8P51685 355 aa9.96□□□□□ -0.82
CCDC171-208ENST00000486641 CCR9P51686 369 aa9.96□□□□□ -0.82
CCDC171-208ENST00000486641 SEC61A1P61619 476 aaKnown RBP9.96□□□□□ -0.82
CCDC171-208ENST00000486641 GRB14Q14449 540 aa9.96□□□□□ -0.82
CCDC171-208ENST00000486641 ADGRF1Q5T601 910 aa9.96□□□□□ -0.82
CCDC171-208ENST00000486641 SLC25A25Q6KCM7 469 aa9.96□□□□□ -0.82
CCDC171-208ENST00000486641 ARL9Q6T311 187 aa9.96□□□□□ -0.82
CCDC171-208ENST00000486641 NHLRC1Q6VVB1 395 aa9.96□□□□□ -0.82
CCDC171-208ENST00000486641 DNAJB7Q7Z6W7 309 aaPredicted RBP9.96□□□□□ -0.82
CCDC171-208ENST00000486641 TPRA1Q86W33 373 aa9.96□□□□□ -0.82
CCDC171-208ENST00000486641 KRT78Q8N1N4 520 aa9.96□□□□□ -0.82
CCDC171-208ENST00000486641 LMNTD1Q8N9Z9 388 aa9.96□□□□□ -0.82
CCDC171-208ENST00000486641 FBXO22Q8NEZ5 403 aa9.96□□□□□ -0.82
CCDC171-208ENST00000486641 OR51G2Q8NGK0 314 aa9.96□□□□□ -0.82
CCDC171-208ENST00000486641 OR5W2Q8NH69 310 aa9.96□□□□□ -0.82
CCDC171-208ENST00000486641 GNPDA2Q8TDQ7 276 aa9.96□□□□□ -0.82
CCDC171-208ENST00000486641 ZFPM2Q8WW38 1151 aa9.96□□□□□ -0.82
CCDC171-208ENST00000486641 SLC5A11Q8WWX8 675 aa9.96□□□□□ -0.82
CCDC171-208ENST00000486641 ASB12Q8WXK4 309 aa9.96□□□□□ -0.82
CCDC171-208ENST00000486641 SORCS1Q8WY21 1168 aa9.96□□□□□ -0.82
CCDC171-208ENST00000486641 TBX5Q99593 518 aa9.96□□□□□ -0.82
CCDC171-208ENST00000486641 TMPRSS13Q9BYE2 586 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms