RNA–Protein interactions for RNA: ENST00000476413.1

VPS50-212, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 381 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-212ENST00000476413 TCTEX1D4Q5JR98 221 aa4.59□□□□□ -1.67
VPS50-212ENST00000476413 GTSCR1Q86UQ5 136 aa4.59□□□□□ -1.67
VPS50-212ENST00000476413 UNC5CLQ8IV45 518 aa4.59□□□□□ -1.67
VPS50-212ENST00000476413 TBC1D21Q8IYX1 336 aa4.59□□□□□ -1.67
VPS50-212ENST00000476413 BPIFB2Q8N4F0 458 aa4.59□□□□□ -1.67
VPS50-212ENST00000476413 FAM133AQ8N9E0 248 aa4.59□□□□□ -1.67
VPS50-212ENST00000476413 OR2T3Q8NH03 318 aa4.59□□□□□ -1.67
VPS50-212ENST00000476413 ADAMTS16Q8TE57 1224 aa4.59□□□□□ -1.67
VPS50-212ENST00000476413 ZBED6CLQ96FA7 236 aaPredicted RBP4.59□□□□□ -1.67
VPS50-212ENST00000476413 SLC30A2Q9BRI3 323 aa4.59□□□□□ -1.67
VPS50-212ENST00000476413 PUS3Q9BZE2 481 aaKnown RBP4.59□□□□□ -1.67
VPS50-212ENST00000476413 IMPAD1Q9NX62 359 aa4.59□□□□□ -1.67
VPS50-212ENST00000476413 CSAG2Q9Y5P2 127 aa4.59□□□□□ -1.67
VPS50-212ENST00000476413 GMPPBQ9Y5P6 360 aa4.59□□□□□ -1.67
VPS50-212ENST00000476413 SLC17A2O00624 439 aa4.58□□□□□ -1.68
VPS50-212ENST00000476413 LCMT2O60294 686 aaKnown RBP4.58□□□□□ -1.68
VPS50-212ENST00000476413 SPAG6O75602 509 aa4.58□□□□□ -1.68
VPS50-212ENST00000476413 H2AFXP16104 143 aaPredicted RBP4.58□□□□□ -1.68
VPS50-212ENST00000476413 TPSB2P20231 275 aa4.58□□□□□ -1.68
VPS50-212ENST00000476413 OTX2P32243 289 aa4.58□□□□□ -1.68
VPS50-212ENST00000476413 MAGEA5P43359 124 aa4.58□□□□□ -1.68
VPS50-212ENST00000476413 BDKRB1P46663 353 aa4.58□□□□□ -1.68
VPS50-212ENST00000476413 HNMTP50135 292 aa4.58□□□□□ -1.68
VPS50-212ENST00000476413 NOVA1P51513 510 aaKnown RBP4.58□□□□□ -1.68
VPS50-212ENST00000476413 OSTNP61366 133 aa4.58□□□□□ -1.68
VPS50-212ENST00000476413 SELPLGQ14242 412 aa4.58□□□□□ -1.68
VPS50-212ENST00000476413 ATXN7L3Q14CW9 347 aaPredicted RBP4.58□□□□□ -1.68
VPS50-212ENST00000476413 TPSAB1Q15661 275 aa4.58□□□□□ -1.68
VPS50-212ENST00000476413 PDK4Q16654 411 aa4.58□□□□□ -1.68
VPS50-212ENST00000476413 MAPK6Q16659 721 aa4.58□□□□□ -1.68
VPS50-212ENST00000476413 RABGAP1LQ5R372 815 aa4.58□□□□□ -1.68
VPS50-212ENST00000476413 PPP1R42Q7Z4L9 355 aa4.58□□□□□ -1.68
VPS50-212ENST00000476413 NAXDQ8IW45 347 aa4.58□□□□□ -1.68
VPS50-212ENST00000476413 LINC01561Q8N1V8 128 aa4.58□□□□□ -1.68
VPS50-212ENST00000476413 RAET1EQ8TD07 263 aa4.58□□□□□ -1.68
VPS50-212ENST00000476413 NFKBIZQ9BYH8 718 aa4.58□□□□□ -1.68
VPS50-212ENST00000476413 TIGARQ9NQ88 270 aa4.58□□□□□ -1.68
VPS50-212ENST00000476413 EXOSC3Q9NQT5 275 aaKnown RBP4.58□□□□□ -1.68
VPS50-212ENST00000476413 USP16Q9Y5T5 823 aa4.58□□□□□ -1.68
VPS50-212ENST00000476413 COL5A2P05997 1499 aaPredicted RBP4.57□□□□□ -1.68
VPS50-212ENST00000476413 A0A087WWV3 80 aa4.57□□□□□ -1.68
VPS50-212ENST00000476413 FAM220BPB1ANY3 271 aa4.57□□□□□ -1.68
VPS50-212ENST00000476413 E9PAM4 449 aa4.57□□□□□ -1.68
VPS50-212ENST00000476413 STX7O15400 261 aaKnown RBP4.57□□□□□ -1.68
VPS50-212ENST00000476413 IGHDP01880 384 aa4.57□□□□□ -1.68
VPS50-212ENST00000476413 ATP6V1C1P21283 382 aa4.57□□□□□ -1.68
VPS50-212ENST00000476413 RGS4P49798 205 aa4.57□□□□□ -1.68
VPS50-212ENST00000476413 IST1P53990 364 aa4.57□□□□□ -1.68
VPS50-212ENST00000476413 RPL8P62917 257 aaKnown RBP4.57□□□□□ -1.68
VPS50-212ENST00000476413 PAX2Q02962 417 aa4.57□□□□□ -1.68
VPS50-212ENST00000476413 PJVKQ0ZLH3 352 aa4.57□□□□□ -1.68
VPS50-212ENST00000476413 RUNX3Q13761 415 aa4.57□□□□□ -1.68
VPS50-212ENST00000476413 SLC10A1Q14973 349 aa4.57□□□□□ -1.68
VPS50-212ENST00000476413 PVRIGQ6DKI7 326 aa4.57□□□□□ -1.68
VPS50-212ENST00000476413 GCNT7Q6ZNI0 430 aa4.57□□□□□ -1.68
VPS50-212ENST00000476413 VASH2Q86V25 355 aa4.57□□□□□ -1.68
VPS50-212ENST00000476413 DENND6BQ8NEG7 585 aa4.57□□□□□ -1.68
VPS50-212ENST00000476413 OR52M1Q8NGK5 317 aa4.57□□□□□ -1.68
VPS50-212ENST00000476413 SPRYD4Q8WW59 207 aaPredicted RBP4.57□□□□□ -1.68
VPS50-212ENST00000476413 RPL3LQ92901 407 aaKnown RBP4.57□□□□□ -1.68
VPS50-212ENST00000476413 ZSCAN5AQ9BUG6 496 aa4.57□□□□□ -1.68
VPS50-212ENST00000476413 ALG12Q9BV10 488 aa4.57□□□□□ -1.68
VPS50-212ENST00000476413 POLR1EQ9GZS1 481 aaKnown RBP4.57□□□□□ -1.68
VPS50-212ENST00000476413 OPN3Q9H1Y3 402 aaPredicted RBP4.57□□□□□ -1.68
VPS50-212ENST00000476413 MRPL39Q9NYK5 338 aaKnown RBP4.57□□□□□ -1.68
VPS50-212ENST00000476413 EHFQ9NZC4 300 aa4.57□□□□□ -1.68
VPS50-212ENST00000476413 SLC2A6Q9UGQ3 507 aa4.57□□□□□ -1.68
VPS50-212ENST00000476413 ATAD2BQ9ULI0 1458 aa4.56□□□□□ -1.68
VPS50-212ENST00000476413 A0A1W2PQ72 361 aa4.56□□□□□ -1.68
VPS50-212ENST00000476413 G3V3Y1 287 aa4.56□□□□□ -1.68
VPS50-212ENST00000476413 H0YCG3 227 aa4.56□□□□□ -1.68
VPS50-212ENST00000476413 LATO43561 262 aa4.56□□□□□ -1.68
VPS50-212ENST00000476413 TSC22D2O75157 780 aa4.56□□□□□ -1.68
VPS50-212ENST00000476413 GJB5O95377 273 aa4.56□□□□□ -1.68
VPS50-212ENST00000476413 SLC2A10O95528 541 aa4.56□□□□□ -1.68
VPS50-212ENST00000476413 HPP00738 406 aa4.56□□□□□ -1.68
VPS50-212ENST00000476413 PRG2P13727 222 aa4.56□□□□□ -1.68
VPS50-212ENST00000476413 RPA2P15927 270 aa4.56□□□□□ -1.68
VPS50-212ENST00000476413 ACADSP16219 412 aa4.56□□□□□ -1.68
VPS50-212ENST00000476413 UQCRC2P22695 453 aa4.56□□□□□ -1.68
VPS50-212ENST00000476413 PSMA2P25787 234 aa4.56□□□□□ -1.68
VPS50-212ENST00000476413 CDH5P33151 784 aaPredicted RBP4.56□□□□□ -1.68
VPS50-212ENST00000476413 ACVR1BP36896 505 aa4.56□□□□□ -1.68
VPS50-212ENST00000476413 EWSR1Q01844 656 aaKnown RBP eCLIP4.56□□□□□ -1.68
VPS50-212ENST00000476413 PEX6Q13608 980 aa4.56□□□□□ -1.68
VPS50-212ENST00000476413 CYP51A1Q16850 503 aa4.56□□□□□ -1.68
VPS50-212ENST00000476413 SLC22A6Q4U2R8 563 aa4.56□□□□□ -1.68
VPS50-212ENST00000476413 ERICH1Q86X53 443 aa4.56□□□□□ -1.68
VPS50-212ENST00000476413 SPATA3Q8NHX4 192 aa4.56□□□□□ -1.68
VPS50-212ENST00000476413 PNPT1Q8TCS8 783 aaKnown RBP4.56□□□□□ -1.68
VPS50-212ENST00000476413 FAM222BQ8WU58 562 aa4.56□□□□□ -1.68
VPS50-212ENST00000476413 ARNTL2Q8WYA1 636 aa4.56□□□□□ -1.68
VPS50-212ENST00000476413 FAM3CQ92520 227 aa4.56□□□□□ -1.68
VPS50-212ENST00000476413 TBK1Q9UHD2 729 aa4.56□□□□□ -1.68
VPS50-212ENST00000476413 SPACA6W5XKT8 324 aa4.56□□□□□ -1.68
VPS50-212ENST00000476413 USP6P35125 1406 aa4.55□□□□□ -1.68
VPS50-212ENST00000476413 FRG2CA6NGY1 282 aa4.55□□□□□ -1.68
VPS50-212ENST00000476413 A8MUI8 341 aa4.55□□□□□ -1.68
VPS50-212ENST00000476413 K7EQM0 130 aa4.55□□□□□ -1.68
VPS50-212ENST00000476413 BCAS1O75363 584 aaPredicted RBP4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms