RNA–Protein interactions for RNA: ENST00000474643.5

VARS-223, Transcript of valyl-tRNA synthetase, human

TSL 5

Gene VARS, Length 885 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VARS-223	ENST00000474643	IRX1	P78414	480 aa	Predicted RBP	13.76	□□□□□ -0.21
VARS-223	ENST00000474643	PRR5	P85299	388 aa		13.76	□□□□□ -0.21
VARS-223	ENST00000474643	FLYWCH1	Q4VC44	716 aa		13.76	□□□□□ -0.21
VARS-223	ENST00000474643	NHSL2	Q5HYW2	709 aa		13.76	□□□□□ -0.21
VARS-223	ENST00000474643	FNDC7	Q5VTL7	733 aa		13.76	□□□□□ -0.21
VARS-223	ENST00000474643	NSUN5P2	Q63ZY6	315 aa		13.76	□□□□□ -0.21
VARS-223	ENST00000474643	PLCZ1	Q86YW0	608 aa		13.76	□□□□□ -0.21
VARS-223	ENST00000474643	OR2L13	Q8N349	312 aa		13.76	□□□□□ -0.21
VARS-223	ENST00000474643	OR5P2	Q8WZ92	322 aa		13.76	□□□□□ -0.21
VARS-223	ENST00000474643	HGD	Q93099	445 aa		13.76	□□□□□ -0.21
VARS-223	ENST00000474643	CHMP6	Q96FZ7	201 aa		13.76	□□□□□ -0.21
VARS-223	ENST00000474643	SFXN2	Q96NB2	322 aa		13.76	□□□□□ -0.21
VARS-223	ENST00000474643	BTBD9	Q96Q07	612 aa		13.76	□□□□□ -0.21
VARS-223	ENST00000474643	ZBTB18	Q99592	522 aa		13.76	□□□□□ -0.21
VARS-223	ENST00000474643	BHLHE41	Q9C0J9	482 aa	Predicted RBP	13.76	□□□□□ -0.21
VARS-223	ENST00000474643		Q9N2J8	555 aa		13.76	□□□□□ -0.21
VARS-223	ENST00000474643	SLCO1B3	Q9NPD5	702 aa		13.76	□□□□□ -0.21
VARS-223	ENST00000474643	PCDHGB4	Q9UN71	923 aa		13.76	□□□□□ -0.21
VARS-223	ENST00000474643	GPR55	Q9Y2T6	319 aa	Predicted RBP	13.76	□□□□□ -0.21
VARS-223	ENST00000474643	WIF1	Q9Y5W5	379 aa		13.76	□□□□□ -0.21
VARS-223	ENST00000474643	USH1C	Q9Y6N9	552 aa		13.76	□□□□□ -0.21
VARS-223	ENST00000474643	CELSR1	Q9NYQ6	3014 aa		13.76	□□□□□ -0.21
VARS-223	ENST00000474643	NCKAP5	O14513	1909 aa		13.75	□□□□□ -0.21
VARS-223	ENST00000474643	SYT5	O00445	386 aa		13.75	□□□□□ -0.21
VARS-223	ENST00000474643	EMC8	O43402	210 aa		13.75	□□□□□ -0.21
VARS-223	ENST00000474643	C6orf47	O95873	294 aa		13.75	□□□□□ -0.21
VARS-223	ENST00000474643	TMIGD3	P0DMS9	266 aa	Predicted RBP	13.75	□□□□□ -0.21
VARS-223	ENST00000474643	CTSS	P25774	331 aa		13.75	□□□□□ -0.21
VARS-223	ENST00000474643	RFX3	P48380	749 aa		13.75	□□□□□ -0.21
VARS-223	ENST00000474643	CLK3	P49761	638 aa	Known RBP	13.75	□□□□□ -0.21
VARS-223	ENST00000474643	AGFG1	P52594	562 aa	Known RBP	13.75	□□□□□ -0.21
VARS-223	ENST00000474643	CLNS1A	P54105	237 aa	Known RBP	13.75	□□□□□ -0.21
VARS-223	ENST00000474643	DLX5	P56178	289 aa		13.75	□□□□□ -0.21
VARS-223	ENST00000474643	VPS26B	Q4G0F5	336 aa		13.75	□□□□□ -0.21
VARS-223	ENST00000474643	SLC9B1	Q4ZJI4	515 aa		13.75	□□□□□ -0.21
VARS-223	ENST00000474643	DCST1	Q5T197	706 aa		13.75	□□□□□ -0.21
VARS-223	ENST00000474643	DESI1	Q6ICB0	168 aa		13.75	□□□□□ -0.21
VARS-223	ENST00000474643	OGFOD2	Q6N063	350 aa		13.75	□□□□□ -0.21
VARS-223	ENST00000474643	TMEM81	Q6P7N7	255 aa		13.75	□□□□□ -0.21
VARS-223	ENST00000474643	P4HA3	Q7Z4N8	544 aa		13.75	□□□□□ -0.21
VARS-223	ENST00000474643	RELL2	Q8NC24	303 aa	Predicted RBP	13.75	□□□□□ -0.21
VARS-223	ENST00000474643	NAXE	Q8NCW5	288 aa		13.75	□□□□□ -0.21
VARS-223	ENST00000474643	NUDT8	Q8WV74	236 aa		13.75	□□□□□ -0.21
VARS-223	ENST00000474643	SLC9A6	Q92581	669 aa		13.75	□□□□□ -0.21
VARS-223	ENST00000474643	JADE3	Q92613	823 aa		13.75	□□□□□ -0.21
VARS-223	ENST00000474643	EFHD2	Q96C19	240 aa	Predicted RBP	13.75	□□□□□ -0.21
VARS-223	ENST00000474643	COQ8B	Q96D53	544 aa		13.75	□□□□□ -0.21
VARS-223	ENST00000474643	WDYHV1	Q96HA8	205 aa		13.75	□□□□□ -0.21
VARS-223	ENST00000474643	VSTM2L	Q96N03	204 aa		13.75	□□□□□ -0.21
VARS-223	ENST00000474643	GPATCH1	Q9BRR8	931 aa	Known RBP	13.75	□□□□□ -0.21
VARS-223	ENST00000474643	CALHM2	Q9HA72	323 aa		13.75	□□□□□ -0.21
VARS-223	ENST00000474643	ZCCHC3	Q9NUD5	404 aa	Known RBP	13.75	□□□□□ -0.21
VARS-223	ENST00000474643	CRIM1	Q9NZV1	1036 aa		13.75	□□□□□ -0.21
VARS-223	ENST00000474643	PPP4R1L	Q9P1A2	415 aa		13.75	□□□□□ -0.21
VARS-223	ENST00000474643	MRTO4	Q9UKD2	239 aa	Known RBP	13.75	□□□□□ -0.21
VARS-223	ENST00000474643	TUBAL3	A6NHL2	446 aa		13.74	□□□□□ -0.21
VARS-223	ENST00000474643	T	O15178	435 aa		13.74	□□□□□ -0.21
VARS-223	ENST00000474643	POLR3G	O15318	223 aa	Predicted RBP	13.74	□□□□□ -0.21
VARS-223	ENST00000474643	SCO2	O43819	266 aa		13.74	□□□□□ -0.21
VARS-223	ENST00000474643	IFI6	P09912	130 aa		13.74	□□□□□ -0.21
VARS-223	ENST00000474643	FREM3	P0C091	2139 aa		13.74	□□□□□ -0.21
VARS-223	ENST00000474643	CT45A8	P0DMV1	189 aa		13.74	□□□□□ -0.21
VARS-223	ENST00000474643	CT45A9	P0DMV2	189 aa		13.74	□□□□□ -0.21
VARS-223	ENST00000474643	DNASE1	P24855	282 aa		13.74	□□□□□ -0.21
VARS-223	ENST00000474643	DNAJA1	P31689	397 aa	Known RBP	13.74	□□□□□ -0.21
VARS-223	ENST00000474643	CEACAM8	P31997	349 aa	Predicted RBP	13.74	□□□□□ -0.21
VARS-223	ENST00000474643	LSP1	P33241	339 aa		13.74	□□□□□ -0.21
VARS-223	ENST00000474643	FRK	P42685	505 aa	Predicted RBP	13.74	□□□□□ -0.21
VARS-223	ENST00000474643	PSMD4	P55036	377 aa	Known RBP	13.74	□□□□□ -0.21
VARS-223	ENST00000474643	RIPPLY3	P57055	190 aa		13.74	□□□□□ -0.21
VARS-223	ENST00000474643	MLC1	Q15049	377 aa		13.74	□□□□□ -0.21
VARS-223	ENST00000474643	DECR1	Q16698	335 aa		13.74	□□□□□ -0.21
VARS-223	ENST00000474643	CT45A2	Q5DJT8	189 aa		13.74	□□□□□ -0.21
VARS-223	ENST00000474643	OR5M10	Q6IEU7	315 aa		13.74	□□□□□ -0.21
VARS-223	ENST00000474643	OR4F3	Q6IEY1	312 aa		13.74	□□□□□ -0.21
VARS-223	ENST00000474643	SEM1	Q6ZVN7	128 aa		13.74	□□□□□ -0.21
VARS-223	ENST00000474643	GRAMD2A	Q8IUY3	354 aa		13.74	□□□□□ -0.21
VARS-223	ENST00000474643	RIMKLA	Q8IXN7	391 aa		13.74	□□□□□ -0.21
VARS-223	ENST00000474643	VPS37A	Q8NEZ2	397 aa		13.74	□□□□□ -0.21
VARS-223	ENST00000474643	FBXO30	Q8TB52	745 aa		13.74	□□□□□ -0.21
VARS-223	ENST00000474643	GPR151	Q8TDV0	419 aa		13.74	□□□□□ -0.21
VARS-223	ENST00000474643	FAM222B	Q8WU58	562 aa		13.74	□□□□□ -0.21
VARS-223	ENST00000474643	MAEL	Q96JY0	434 aa	Known RBP	13.74	□□□□□ -0.21
VARS-223	ENST00000474643	MS4A4E	Q96PG1	132 aa		13.74	□□□□□ -0.21
VARS-223	ENST00000474643	TM9SF2	Q99805	663 aa		13.74	□□□□□ -0.21
VARS-223	ENST00000474643	YIPF4	Q9BSR8	244 aa		13.74	□□□□□ -0.21
VARS-223	ENST00000474643	SDHAF3	Q9NRP4	125 aa		13.74	□□□□□ -0.21
VARS-223	ENST00000474643	AIG1	Q9NVV5	245 aa		13.74	□□□□□ -0.21
VARS-223	ENST00000474643	ADAM21	Q9UKJ8	722 aa		13.74	□□□□□ -0.21
VARS-223	ENST00000474643	RPH3A	Q9Y2J0	694 aa	Predicted RBP	13.74	□□□□□ -0.21
VARS-223	ENST00000474643	F8	P00451	2351 aa		13.73	□□□□□ -0.21
VARS-223	ENST00000474643	GMNC	A6NCL1	334 aa		13.73	□□□□□ -0.21
VARS-223	ENST00000474643	MBD3L4	A6NDZ8	208 aa	Predicted RBP	13.73	□□□□□ -0.21
VARS-223	ENST00000474643	MBD3L3	A6NE82	208 aa	Predicted RBP	13.73	□□□□□ -0.21
VARS-223	ENST00000474643	MBD3L5	A6NJ08	208 aa	Predicted RBP	13.73	□□□□□ -0.21
VARS-223	ENST00000474643	TTC36	A6NLP5	189 aa		13.73	□□□□□ -0.21
VARS-223	ENST00000474643	KDM4E	B2RXH2	506 aa	Predicted RBP	13.73	□□□□□ -0.21
VARS-223	ENST00000474643	ZNF195	O14628	629 aa		13.73	□□□□□ -0.21
VARS-223	ENST00000474643	UBD	O15205	165 aa		13.73	□□□□□ -0.21
VARS-223	ENST00000474643	SHOX2	O60902	331 aa	Predicted RBP	13.73	□□□□□ -0.21

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