RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 MRTO4Q9UKD2 239 aaKnown RBP16.76■□□□□ 0.27
COL7A1-209ENST00000474432 A0A1W2PNV4 684 aa16.75■□□□□ 0.27
COL7A1-209ENST00000474432 PEX11AO75192 247 aa16.75■□□□□ 0.27
COL7A1-209ENST00000474432 ANGPTL1O95841 491 aa16.75■□□□□ 0.27
COL7A1-209ENST00000474432 LAMP1P11279 417 aa16.75■□□□□ 0.27
COL7A1-209ENST00000474432 PEPDP12955 493 aa16.75■□□□□ 0.27
COL7A1-209ENST00000474432 ASMTP46597 345 aa16.75■□□□□ 0.27
COL7A1-209ENST00000474432 CLDN20P56880 219 aa16.75■□□□□ 0.27
COL7A1-209ENST00000474432 IFFO1Q0D2I5 559 aa16.75■□□□□ 0.27
COL7A1-209ENST00000474432 GANABQ14697 944 aaKnown RBP16.75■□□□□ 0.27
COL7A1-209ENST00000474432 MLC1Q15049 377 aa16.75■□□□□ 0.27
COL7A1-209ENST00000474432 C6orf136Q5SQH8 315 aa16.75■□□□□ 0.27
COL7A1-209ENST00000474432 CDC20BQ86Y33 519 aa16.75■□□□□ 0.27
COL7A1-209ENST00000474432 CEP70Q8NHQ1 597 aa16.75■□□□□ 0.27
COL7A1-209ENST00000474432 ZFP28Q8NHY6 868 aa16.75■□□□□ 0.27
COL7A1-209ENST00000474432 FBXO30Q8TB52 745 aa16.75■□□□□ 0.27
COL7A1-209ENST00000474432 FIG4Q92562 907 aa16.75■□□□□ 0.27
COL7A1-209ENST00000474432 FAM120BQ96EK7 910 aaKnown RBP16.75■□□□□ 0.27
COL7A1-209ENST00000474432 DTNBP1Q96EV8 351 aa16.75■□□□□ 0.27
COL7A1-209ENST00000474432 LRRC46Q96FV0 321 aa16.75■□□□□ 0.27
COL7A1-209ENST00000474432 OTUB1Q96FW1 271 aaPredicted RBP16.75■□□□□ 0.27
COL7A1-209ENST00000474432 MS4A4EQ96PG1 132 aa16.75■□□□□ 0.27
COL7A1-209ENST00000474432 NPAS1Q99742 590 aa16.75■□□□□ 0.27
COL7A1-209ENST00000474432 CLEC4MQ9H2X3 399 aaPredicted RBP16.75■□□□□ 0.27
COL7A1-209ENST00000474432 C3orf14Q9HBI5 128 aa16.75■□□□□ 0.27
COL7A1-209ENST00000474432 EML4Q9HC35 981 aaKnown RBP16.75■□□□□ 0.27
COL7A1-209ENST00000474432 GALNT8Q9NY28 637 aa16.75■□□□□ 0.27
COL7A1-209ENST00000474432 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.75■□□□□ 0.27
COL7A1-209ENST00000474432 V9GYY5 206 aaPredicted RBP16.75■□□□□ 0.27
COL7A1-209ENST00000474432 TUBAL3A6NHL2 446 aa16.74■□□□□ 0.27
COL7A1-209ENST00000474432 A8MXE2 369 aa16.74■□□□□ 0.27
COL7A1-209ENST00000474432 SHISA8B8ZZ34 492 aa16.74■□□□□ 0.27
COL7A1-209ENST00000474432 ALG1L2C9J202 215 aa16.74■□□□□ 0.27
COL7A1-209ENST00000474432 SCAMP2O15127 329 aaKnown RBP16.74■□□□□ 0.27
COL7A1-209ENST00000474432 EMC8O43402 210 aa16.74■□□□□ 0.27
COL7A1-209ENST00000474432 KCNK2O95069 426 aa16.74■□□□□ 0.27
COL7A1-209ENST00000474432 KCNH1O95259 989 aa16.74■□□□□ 0.27
COL7A1-209ENST00000474432 SLU7O95391 586 aaKnown RBP16.74■□□□□ 0.27
COL7A1-209ENST00000474432 NGFRP08138 427 aa16.74■□□□□ 0.27
COL7A1-209ENST00000474432 EPXP11678 715 aa16.74■□□□□ 0.27
COL7A1-209ENST00000474432 SERPINB5P36952 375 aa16.74■□□□□ 0.27
COL7A1-209ENST00000474432 PSMD4P55036 377 aaKnown RBP16.74■□□□□ 0.27
COL7A1-209ENST00000474432 C17orf67Q0P5P2 114 aa16.74■□□□□ 0.27
COL7A1-209ENST00000474432 PTGR1Q14914 329 aa16.74■□□□□ 0.27
COL7A1-209ENST00000474432 CPEB4Q17RY0 729 aaKnown RBP eCLIP16.74■□□□□ 0.27
COL7A1-209ENST00000474432 GLYR1Q49A26 553 aaPredicted RBP16.74■□□□□ 0.27
COL7A1-209ENST00000474432 RAET1LQ5VY80 246 aa16.74■□□□□ 0.27
COL7A1-209ENST00000474432 FIGNL1Q6PIW4 674 aa16.74■□□□□ 0.27
COL7A1-209ENST00000474432 LUZP2Q86TE4 346 aa16.74■□□□□ 0.27
COL7A1-209ENST00000474432 KIF18BQ86Y91 864 aa16.74■□□□□ 0.27
COL7A1-209ENST00000474432 GRAMD2AQ8IUY3 354 aa16.74■□□□□ 0.27
COL7A1-209ENST00000474432 UBQLNLQ8IYU4 475 aa16.74■□□□□ 0.27
COL7A1-209ENST00000474432 MREGQ8N565 214 aa16.74■□□□□ 0.27
COL7A1-209ENST00000474432 SLC9A6Q92581 669 aa16.74■□□□□ 0.27
COL7A1-209ENST00000474432 STARD4Q96DR4 205 aa16.74■□□□□ 0.27
COL7A1-209ENST00000474432 PPP3R2Q96LZ3 170 aa16.74■□□□□ 0.27
COL7A1-209ENST00000474432 RBM24Q9BX46 236 aaKnown RBP16.74■□□□□ 0.27
COL7A1-209ENST00000474432 ZNF395Q9H8N7 513 aaPredicted RBP16.74■□□□□ 0.27
COL7A1-209ENST00000474432 MAP1AP78559 2803 aaPredicted RBP16.73■□□□□ 0.27
COL7A1-209ENST00000474432 OXSR1O95747 527 aaPredicted RBP16.73■□□□□ 0.27
COL7A1-209ENST00000474432 TBXA2RP21731 343 aa16.73■□□□□ 0.27
COL7A1-209ENST00000474432 ART1P52961 327 aa16.73■□□□□ 0.27
COL7A1-209ENST00000474432 DIO3P55073 304 aa16.73■□□□□ 0.27
COL7A1-209ENST00000474432 VPS26BQ4G0F5 336 aa16.73■□□□□ 0.27
COL7A1-209ENST00000474432 LRIG3Q6UXM1 1119 aa16.73■□□□□ 0.27
COL7A1-209ENST00000474432 R3HCC1LQ7Z5L2 792 aaKnown RBP16.73■□□□□ 0.27
COL7A1-209ENST00000474432 GGNQ86UU5 652 aa16.73■□□□□ 0.27
COL7A1-209ENST00000474432 HOMEZQ8IX15 550 aa16.73■□□□□ 0.27
COL7A1-209ENST00000474432 RIMKLAQ8IXN7 391 aa16.73■□□□□ 0.27
COL7A1-209ENST00000474432 PSMA8Q8TAA3 256 aa16.73■□□□□ 0.27
COL7A1-209ENST00000474432 COQ8BQ96D53 544 aa16.73■□□□□ 0.27
COL7A1-209ENST00000474432 ZNF845Q96IR2 970 aaPredicted RBP16.73■□□□□ 0.27
COL7A1-209ENST00000474432 YIPF4Q9BSR8 244 aa16.73■□□□□ 0.27
COL7A1-209ENST00000474432 C1orf50Q9BV19 199 aa16.73■□□□□ 0.27
COL7A1-209ENST00000474432 TBL1XR1Q9BZK7 514 aa16.73■□□□□ 0.27
COL7A1-209ENST00000474432 CXXC4Q9H2H0 198 aa16.73■□□□□ 0.27
COL7A1-209ENST00000474432 PTGES2Q9H7Z7 377 aa16.73■□□□□ 0.27
COL7A1-209ENST00000474432 ST6GALNAC2Q9UJ37 374 aa16.73■□□□□ 0.27
COL7A1-209ENST00000474432 SETD2Q9BYW2 2564 aaPredicted RBP16.73■□□□□ 0.27
COL7A1-209ENST00000474432 A0A1W2PPR1 153 aa16.72■□□□□ 0.27
COL7A1-209ENST00000474432 SLC22A20A6NK97 555 aa16.72■□□□□ 0.27
COL7A1-209ENST00000474432 LINC01387J3KSC0 135 aa16.72■□□□□ 0.27
COL7A1-209ENST00000474432 ITM2AO43736 263 aa16.72■□□□□ 0.27
COL7A1-209ENST00000474432 GMFGO60234 142 aa16.72■□□□□ 0.27
COL7A1-209ENST00000474432 TNFRSF21O75509 655 aa16.72■□□□□ 0.27
COL7A1-209ENST00000474432 SKAP2O75563 359 aaPredicted RBP16.72■□□□□ 0.27
COL7A1-209ENST00000474432 LYPLA1O75608 230 aaPredicted RBP16.72■□□□□ 0.27
COL7A1-209ENST00000474432 HMGN2P05204 90 aaKnown RBP16.72■□□□□ 0.27
COL7A1-209ENST00000474432 PSMA4P25789 261 aaKnown RBP16.72■□□□□ 0.27
COL7A1-209ENST00000474432 KIR2DL2P43627 348 aaPredicted RBP16.72■□□□□ 0.27
COL7A1-209ENST00000474432 CLK3P49761 638 aaKnown RBP16.72■□□□□ 0.27
COL7A1-209ENST00000474432 ZNF844Q08AG5 666 aa16.72■□□□□ 0.27
COL7A1-209ENST00000474432 GUSBP1Q15486 140 aa16.72■□□□□ 0.27
COL7A1-209ENST00000474432 CCNJQ5T5M9 372 aa16.72■□□□□ 0.27
COL7A1-209ENST00000474432 IL23RQ5VWK5 629 aa16.72■□□□□ 0.27
COL7A1-209ENST00000474432 VWA1Q6PCB0 445 aa16.72■□□□□ 0.27
COL7A1-209ENST00000474432 ZCCHC12Q6PEW1 402 aa16.72■□□□□ 0.27
COL7A1-209ENST00000474432 KRTCAP2Q8N6L1 136 aa16.72■□□□□ 0.27
COL7A1-209ENST00000474432 GOT1L1Q8NHS2 421 aaPredicted RBP16.72■□□□□ 0.27
COL7A1-209ENST00000474432 NINJ1Q92982 152 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms