RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 G3V3Y1 287 aa2.17□□□□□ -2.06
CCDC88A-212ENST00000474059 TM9SF1O15321 606 aa2.17□□□□□ -2.06
CCDC88A-212ENST00000474059 PPIHO43447 177 aaKnown RBP2.17□□□□□ -2.06
CCDC88A-212ENST00000474059 LCMT2O60294 686 aaKnown RBP2.17□□□□□ -2.06
CCDC88A-212ENST00000474059 RHBDL1O75783 438 aa2.17□□□□□ -2.06
CCDC88A-212ENST00000474059 GUCA1CO95843 209 aa2.17□□□□□ -2.06
CCDC88A-212ENST00000474059 MBD3O95983 291 aa2.17□□□□□ -2.06
CCDC88A-212ENST00000474059 IGKV3-11P04433 115 aa2.17□□□□□ -2.06
CCDC88A-212ENST00000474059 PTMAP06454 111 aaKnown RBP2.17□□□□□ -2.06
CCDC88A-212ENST00000474059 IGFBP1P08833 259 aaPredicted RBP2.17□□□□□ -2.06
CCDC88A-212ENST00000474059 THRBP10828 461 aa2.17□□□□□ -2.06
CCDC88A-212ENST00000474059 LAMP1P11279 417 aa2.17□□□□□ -2.06
CCDC88A-212ENST00000474059 UQCRBP14927 111 aa2.17□□□□□ -2.06
CCDC88A-212ENST00000474059 TNNI3P19429 210 aa2.17□□□□□ -2.06
CCDC88A-212ENST00000474059 HPDP32754 393 aaPredicted RBP2.17□□□□□ -2.06
CCDC88A-212ENST00000474059 OR1D4P47884 311 aa2.17□□□□□ -2.06
CCDC88A-212ENST00000474059 TRPC1P48995 793 aa2.17□□□□□ -2.06
CCDC88A-212ENST00000474059 PAX2Q02962 417 aa2.17□□□□□ -2.06
CCDC88A-212ENST00000474059 KLHL30Q0D2K2 578 aa2.17□□□□□ -2.06
CCDC88A-212ENST00000474059 IL18R1Q13478 541 aa2.17□□□□□ -2.06
CCDC88A-212ENST00000474059 SLC10A1Q14973 349 aa2.17□□□□□ -2.06
CCDC88A-212ENST00000474059 DCAF4L1Q3SXM0 396 aa2.17□□□□□ -2.06
CCDC88A-212ENST00000474059 TMEM52BQ4KMG9 183 aa2.17□□□□□ -2.06
CCDC88A-212ENST00000474059 CYBRD1Q53TN4 286 aa2.17□□□□□ -2.06
CCDC88A-212ENST00000474059 ZNF311Q5JNZ3 666 aa2.17□□□□□ -2.06
CCDC88A-212ENST00000474059 ASPHD2Q6ICH7 369 aa2.17□□□□□ -2.06
CCDC88A-212ENST00000474059 LRRC8BQ6P9F7 803 aa2.17□□□□□ -2.06
CCDC88A-212ENST00000474059 TMEM184AQ6ZMB5 413 aa2.17□□□□□ -2.06
CCDC88A-212ENST00000474059 CYS1Q717R9 158 aa2.17□□□□□ -2.06
CCDC88A-212ENST00000474059 UNC5CLQ8IV45 518 aa2.17□□□□□ -2.06
CCDC88A-212ENST00000474059 TEX9Q8N6V9 391 aa2.17□□□□□ -2.06
CCDC88A-212ENST00000474059 STKLD1Q8NE28 680 aa2.17□□□□□ -2.06
CCDC88A-212ENST00000474059 UPRTQ96BW1 309 aa2.17□□□□□ -2.06
CCDC88A-212ENST00000474059 HPDLQ96IR7 371 aa2.17□□□□□ -2.06
CCDC88A-212ENST00000474059 ELMO2Q96JJ3 720 aa2.17□□□□□ -2.06
CCDC88A-212ENST00000474059 THUMPD2Q9BTF0 503 aaKnown RBP2.17□□□□□ -2.06
CCDC88A-212ENST00000474059 TBC1D10AQ9BXI6 508 aa2.17□□□□□ -2.06
CCDC88A-212ENST00000474059 CALHM2Q9HA72 323 aa2.17□□□□□ -2.06
CCDC88A-212ENST00000474059 SLC35D1Q9NTN3 355 aa2.17□□□□□ -2.06
CCDC88A-212ENST00000474059 RBM28Q9NW13 759 aaKnown RBP2.17□□□□□ -2.06
CCDC88A-212ENST00000474059 UTP6Q9NYH9 597 aaKnown RBP2.17□□□□□ -2.06
CCDC88A-212ENST00000474059 DUSP12Q9UNI6 340 aa2.17□□□□□ -2.06
CCDC88A-212ENST00000474059 CHMP2BQ9UQN3 213 aa2.17□□□□□ -2.06
CCDC88A-212ENST00000474059 AP4B1Q9Y6B7 739 aa2.17□□□□□ -2.06
CCDC88A-212ENST00000474059 CCDC7Q96M83 1385 aa2.17□□□□□ -2.06
CCDC88A-212ENST00000474059 CARMIL1Q5VZK9 1371 aa2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 ZSCAN5BA6NJL1 495 aa2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 EFCAB7A8K855 629 aa2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 A8MX80 341 aa2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 RAMP1O60894 148 aa2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 GJB5O95377 273 aa2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 JCHAINP01591 159 aa2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 CALCBP10092 127 aa2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 SDC1P18827 310 aa2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 XRCC1P18887 633 aaPredicted RBP2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 CDH5P33151 784 aaPredicted RBP2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 RPL4P36578 427 aaKnown RBP2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 DLSTP36957 453 aa2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 ALDH3B2P48448 385 aa2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 FNTAP49354 379 aa2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 NAPAP54920 295 aa2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 PLOD1Q02809 727 aaPredicted RBP2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 LINC01620Q4KN68 170 aa2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 TMEM41BQ5BJD5 291 aa2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 LGSNQ5TDP6 509 aa2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 SULT1C3Q6IMI6 304 aa2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 CBLN3Q6UW01 205 aa2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 STAC2Q6ZMT1 411 aa2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 GCNT7Q6ZNI0 430 aa2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 CENPUQ71F23 418 aa2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 PARGQ86W56 976 aa2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 ERICH1Q86X53 443 aa2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 ZNF573Q86YE8 665 aa2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 GRAMD2AQ8IUY3 354 aa2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 Q8N9G6 341 aaPredicted RBP2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 VN1R17PQ8TDU5 208 aa2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 C18orf25Q96B23 403 aaPredicted RBP2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 DHTKD1Q96HY7 919 aaPredicted RBP2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 PPP1R16AQ96I34 528 aa2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 TSGA13Q96PP4 275 aa2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 VPS35Q96QK1 796 aa2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 TMEM121Q9BTD3 319 aa2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 HCAR1Q9BXC0 346 aa2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 COMMD4Q9H0A8 199 aa2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 SLC25A51Q9H1U9 297 aa2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 RHOJQ9H4E5 214 aa2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 WDR76Q9H967 626 aa2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 COG4Q9H9E3 785 aa2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 EXOSC3Q9NQT5 275 aaKnown RBP2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 ZNF275Q9NSD4 429 aaPredicted RBP2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 ELOVL2Q9NXB9 296 aa2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 SENP1Q9P0U3 644 aa2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 EPS15L1Q9UBC2 864 aa2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 SH3BGRL2Q9UJC5 107 aa2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 B9D1Q9UPM9 204 aa2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 RNF6Q9Y252 685 aa2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 EIF3LQ9Y262 564 aaKnown RBP2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 AP1M2Q9Y6Q5 423 aa2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 USP6P35125 1406 aa2.16□□□□□ -2.06
CCDC88A-212ENST00000474059 A0A1B0GWJ7 208 aa2.15□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 128.9 ms