RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 FIGNL1Q6PIW4 674 aa14.21□□□□□ -0.13
CCDC88B-205ENST00000472524 CHMP1BQ7LBR1 199 aa14.21□□□□□ -0.13
CCDC88B-205ENST00000472524 R3HCC1LQ7Z5L2 792 aaKnown RBP14.21□□□□□ -0.13
CCDC88B-205ENST00000472524 TGIF2LYQ8IUE0 185 aa14.21□□□□□ -0.13
CCDC88B-205ENST00000472524 HOMEZQ8IX15 550 aa14.21□□□□□ -0.13
CCDC88B-205ENST00000472524 CDRT4Q8N9R6 151 aa14.21□□□□□ -0.13
CCDC88B-205ENST00000472524 OR7A2PQ8NGA2 310 aa14.21□□□□□ -0.13
CCDC88B-205ENST00000472524 JADE3Q92613 823 aa14.21□□□□□ -0.13
CCDC88B-205ENST00000472524 GIMAP5Q96F15 307 aa14.21□□□□□ -0.13
CCDC88B-205ENST00000472524 C3orf30Q96M34 536 aa14.21□□□□□ -0.13
CCDC88B-205ENST00000472524 ZFP3Q96NJ6 502 aa14.21□□□□□ -0.13
CCDC88B-205ENST00000472524 YIPF4Q9BSR8 244 aa14.21□□□□□ -0.13
CCDC88B-205ENST00000472524 SFXN3Q9BWM7 321 aa14.21□□□□□ -0.13
CCDC88B-205ENST00000472524 PTGES2Q9H7Z7 377 aa14.21□□□□□ -0.13
CCDC88B-205ENST00000472524 RASSF1Q9NS23 344 aa14.21□□□□□ -0.13
CCDC88B-205ENST00000472524 ACSS1Q9NUB1 689 aaPredicted RBP14.21□□□□□ -0.13
CCDC88B-205ENST00000472524 ZDHHC2Q9UIJ5 367 aa14.21□□□□□ -0.13
CCDC88B-205ENST00000472524 PLEKHA6Q9Y2H5 1048 aa14.21□□□□□ -0.13
CCDC88B-205ENST00000472524 HRNRQ86YZ3 2850 aaPredicted RBP14.21□□□□□ -0.13
CCDC88B-205ENST00000472524 TUBAL3A6NHL2 446 aa14.2□□□□□ -0.14
CCDC88B-205ENST00000472524 H3BML4 177 aa14.2□□□□□ -0.14
CCDC88B-205ENST00000472524 SCAMP2O15127 329 aaKnown RBP14.2□□□□□ -0.14
CCDC88B-205ENST00000472524 SEC14L5O43304 696 aa14.2□□□□□ -0.14
CCDC88B-205ENST00000472524 EMC8O43402 210 aa14.2□□□□□ -0.14
CCDC88B-205ENST00000472524 ANGPTL1O95841 491 aa14.2□□□□□ -0.14
CCDC88B-205ENST00000472524 TGM6O95932 706 aa14.2□□□□□ -0.14
CCDC88B-205ENST00000472524 DDX5P17844 614 aaKnown RBP14.2□□□□□ -0.14
CCDC88B-205ENST00000472524 KLK2P20151 261 aa14.2□□□□□ -0.14
CCDC88B-205ENST00000472524 SERPINB5P36952 375 aa14.2□□□□□ -0.14
CCDC88B-205ENST00000472524 MAP3K8P41279 467 aa14.2□□□□□ -0.14
CCDC88B-205ENST00000472524 CPA2P48052 419 aa14.2□□□□□ -0.14
CCDC88B-205ENST00000472524 KRT71Q3SY84 523 aa14.2□□□□□ -0.14
CCDC88B-205ENST00000472524 MFSD12Q6NUT3 480 aa14.2□□□□□ -0.14
CCDC88B-205ENST00000472524 APOOLQ6UXV4 268 aa14.2□□□□□ -0.14
CCDC88B-205ENST00000472524 KIF18BQ86Y91 864 aa14.2□□□□□ -0.14
CCDC88B-205ENST00000472524 MEIOBQ8N635 442 aa14.2□□□□□ -0.14
CCDC88B-205ENST00000472524 GATSQ8NAP1 163 aa14.2□□□□□ -0.14
CCDC88B-205ENST00000472524 FNDC5Q8NAU1 212 aa14.2□□□□□ -0.14
CCDC88B-205ENST00000472524 SLC16A11Q8NCK7 471 aa14.2□□□□□ -0.14
CCDC88B-205ENST00000472524 PPP1R14CQ8TAE6 165 aa14.2□□□□□ -0.14
CCDC88B-205ENST00000472524 FAM222BQ8WU58 562 aa14.2□□□□□ -0.14
CCDC88B-205ENST00000472524 SMPDL3BQ92485 455 aa14.2□□□□□ -0.14
CCDC88B-205ENST00000472524 HOXB13Q92826 284 aaPredicted RBP14.2□□□□□ -0.14
CCDC88B-205ENST00000472524 MTERF3Q96E29 417 aa14.2□□□□□ -0.14
CCDC88B-205ENST00000472524 C1GALT1C1Q96EU7 318 aa14.2□□□□□ -0.14
CCDC88B-205ENST00000472524 CHMP6Q96FZ7 201 aa14.2□□□□□ -0.14
CCDC88B-205ENST00000472524 C16orf58Q96GQ5 468 aa14.2□□□□□ -0.14
CCDC88B-205ENST00000472524 PKNOX2Q96KN3 472 aa14.2□□□□□ -0.14
CCDC88B-205ENST00000472524 UCN2Q96RP3 112 aa14.2□□□□□ -0.14
CCDC88B-205ENST00000472524 RBM24Q9BX46 236 aaKnown RBP14.2□□□□□ -0.14
CCDC88B-205ENST00000472524 JKAMPQ9P055 326 aa14.2□□□□□ -0.14
CCDC88B-205ENST00000472524 ATP6V1HQ9UI12 483 aa14.2□□□□□ -0.14
CCDC88B-205ENST00000472524 HEATR5AQ86XA9 2040 aa14.2□□□□□ -0.14
CCDC88B-205ENST00000472524 PRRC2AP48634 2157 aaKnown RBP14.2□□□□□ -0.14
CCDC88B-205ENST00000472524 OR2M5A3KFT3 312 aa14.19□□□□□ -0.14
CCDC88B-205ENST00000472524 FAM221AA4D161 298 aa14.19□□□□□ -0.14
CCDC88B-205ENST00000472524 A6NNC1 897 aa14.19□□□□□ -0.14
CCDC88B-205ENST00000472524 SHISA8B8ZZ34 492 aa14.19□□□□□ -0.14
CCDC88B-205ENST00000472524 H0YC42 278 aa14.19□□□□□ -0.14
CCDC88B-205ENST00000472524 HCRTR2O43614 444 aa14.19□□□□□ -0.14
CCDC88B-205ENST00000472524 TYROBPO43914 113 aa14.19□□□□□ -0.14
CCDC88B-205ENST00000472524 ALOX5P09917 674 aa14.19□□□□□ -0.14
CCDC88B-205ENST00000472524 HOXB4P17483 251 aaPredicted RBP14.19□□□□□ -0.14
CCDC88B-205ENST00000472524 RPL3P39023 403 aaKnown RBP14.19□□□□□ -0.14
CCDC88B-205ENST00000472524 TPD52P55327 224 aaPredicted RBP14.19□□□□□ -0.14
CCDC88B-205ENST00000472524 PRR5P85299 388 aa14.19□□□□□ -0.14
CCDC88B-205ENST00000472524 C17orf67Q0P5P2 114 aa14.19□□□□□ -0.14
CCDC88B-205ENST00000472524 PTGR1Q14914 329 aa14.19□□□□□ -0.14
CCDC88B-205ENST00000472524 BCL2A1Q16548 175 aa14.19□□□□□ -0.14
CCDC88B-205ENST00000472524 DUSP5Q16690 384 aa14.19□□□□□ -0.14
CCDC88B-205ENST00000472524 C6orf136Q5SQH8 315 aa14.19□□□□□ -0.14
CCDC88B-205ENST00000472524 FBXW10Q5XX13 1052 aa14.19□□□□□ -0.14
CCDC88B-205ENST00000472524 LRIG3Q6UXM1 1119 aa14.19□□□□□ -0.14
CCDC88B-205ENST00000472524 ZAR1Q86SH2 424 aa14.19□□□□□ -0.14
CCDC88B-205ENST00000472524 CDC20BQ86Y33 519 aa14.19□□□□□ -0.14
CCDC88B-205ENST00000472524 NUDCD3Q8IVD9 361 aa14.19□□□□□ -0.14
CCDC88B-205ENST00000472524 COX18Q8N8Q8 333 aa14.19□□□□□ -0.14
CCDC88B-205ENST00000472524 CHDHQ8NE62 594 aaPredicted RBP14.19□□□□□ -0.14
CCDC88B-205ENST00000472524 LINC01560Q8TB33 94 aa14.19□□□□□ -0.14
CCDC88B-205ENST00000472524 TUBGCP3Q96CW5 907 aa14.19□□□□□ -0.14
CCDC88B-205ENST00000472524 FAM120BQ96EK7 910 aaKnown RBP14.19□□□□□ -0.14
CCDC88B-205ENST00000472524 ACBD3Q9H3P7 528 aa14.19□□□□□ -0.14
CCDC88B-205ENST00000472524 SIRT3Q9NTG7 399 aaPredicted RBP14.19□□□□□ -0.14
CCDC88B-205ENST00000472524 ZCCHC3Q9NUD5 404 aaKnown RBP14.19□□□□□ -0.14
CCDC88B-205ENST00000472524 NTMQ9P121 344 aa14.19□□□□□ -0.14
CCDC88B-205ENST00000472524 VDAC3Q9Y277 283 aa14.19□□□□□ -0.14
CCDC88B-205ENST00000472524 ZNF337Q9Y3M9 751 aa14.19□□□□□ -0.14
CCDC88B-205ENST00000472524 SNX8Q9Y5X2 465 aa14.19□□□□□ -0.14
CCDC88B-205ENST00000472524 MAP1AP78559 2803 aaPredicted RBP14.19□□□□□ -0.14
CCDC88B-205ENST00000472524 A0A1W2PRB8 838 aa14.18□□□□□ -0.14
CCDC88B-205ENST00000472524 WDR91A4D1P6 747 aa14.18□□□□□ -0.14
CCDC88B-205ENST00000472524 SLC22A20A6NK97 555 aa14.18□□□□□ -0.14
CCDC88B-205ENST00000472524 RGS16O15492 202 aaPredicted RBP14.18□□□□□ -0.14
CCDC88B-205ENST00000472524 LYPLA1O75608 230 aaPredicted RBP14.18□□□□□ -0.14
CCDC88B-205ENST00000472524 KCNK2O95069 426 aa14.18□□□□□ -0.14
CCDC88B-205ENST00000472524 OXSR1O95747 527 aaPredicted RBP14.18□□□□□ -0.14
CCDC88B-205ENST00000472524 HSPA4LO95757 839 aa14.18□□□□□ -0.14
CCDC88B-205ENST00000472524 LAMP1P11279 417 aa14.18□□□□□ -0.14
CCDC88B-205ENST00000472524 ETV4P43268 484 aa14.18□□□□□ -0.14
CCDC88B-205ENST00000472524 PRIM2P49643 509 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms