RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 ARHGAP19Q14CB8 494 aa12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 SFRP4Q6FHJ7 346 aaPredicted RBP12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 CMTM1Q8IZ96 169 aa12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 SLC29A3Q9BZD2 475 aa12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 MCTS1Q9ULC4 181 aaKnown RBP12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 IGLV3-22A0A075B6J6 115 aa12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 XCR1P46094 333 aa12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 MAP4K2Q12851 820 aa12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 SFRP5Q5T4F7 317 aa12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 LIPJQ5W064 366 aa12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 ZNF662Q6ZS27 426 aa12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 SLC41A3Q96GZ6 507 aa12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 CACNA1EQ15878 2313 aa12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 LMTK2Q8IWU2 1503 aa12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 C17orf113A0A1B0GUU1 675 aa12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 AQP12BA6NM10 295 aa12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 SULT2B1O00204 365 aa12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 RABIFP47224 123 aa12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 RAB11BQ15907 218 aa12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 RPS26P11Q5JNZ5 115 aaPredicted RBP12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 AGAP7PQ5VUJ5 663 aa12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 AGAP6Q5VW22 663 aa12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 AQP12AQ8IXF9 295 aa12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 CYB561A3Q8NBI2 242 aa12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 OR9A4Q8NGU2 314 aa12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 AGAP4Q96P64 663 aa12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 HCAR1Q9BXC0 346 aa12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 GPATCH2Q9NW75 528 aa12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 TMEM248Q9NWD8 314 aa12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 RNF186Q9NXI6 227 aa12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 EXOSC1Q9Y3B2 195 aaKnown RBP12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 PPP1R3DO95685 299 aa12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 APOC3P02656 99 aa12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 ALDOAP04075 364 aaKnown RBP12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 ZNF404Q494X3 552 aa12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 ELP2Q6IA86 826 aa12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 TMEM173Q86WV6 379 aaPredicted RBP12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 TMEM130Q8N3G9 435 aa12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 TEX26Q8N6G2 289 aa12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 MUCL1Q96DR8 90 aa12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 SENP5Q96HI0 755 aaPredicted RBP12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 CNN2Q99439 309 aaKnown RBP12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 SERPINA5P05154 406 aa12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 POU2F2P09086 479 aa12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 FPR1P21462 350 aa12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 KITLGP21583 273 aa12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 HNRNPH3P31942 346 aaKnown RBP12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 PTGER4P35408 488 aa12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 TAF9Q16594 264 aa12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 FAM111BQ6SJ93 734 aa12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 ZDHHC14Q8IZN3 488 aa12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 PLD6Q8N2A8 252 aaKnown RBP12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 ACBD4Q8NC06 268 aa12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 TMEM14AQ9Y6G1 99 aa12.55□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 AGLP35573 1532 aa12.54□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.54□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.54□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 ANKRD30BLA7E2S9 258 aa12.54□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 PRAMEF11O60813 436 aa12.54□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 SEC14L2O76054 403 aa12.54□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 SNAPC3Q92966 411 aa12.54□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 POTEKPQ9BYX7 375 aa12.54□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 GPR62Q9BZJ7 368 aa12.54□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 ULBP3Q9BZM4 244 aa12.54□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 PAK1IP1Q9NWT1 392 aaPredicted RBP12.54□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 DFNA5O60443 496 aa12.54□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 SERPINE2P07093 398 aa12.54□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 H2AFB2P0C5Z0 115 aa12.54□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 EMX2Q04743 252 aa12.54□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 PIGCQ92535 297 aa12.54□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 RAB7BQ96AH8 199 aa12.54□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 MACROD1Q9BQ69 325 aa12.54□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 NUDT22Q9BRQ3 303 aa12.54□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 PLCXD1Q9NUJ7 323 aa12.54□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 POU3F2P20265 443 aaPredicted RBP12.54□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 ART1P52961 327 aa12.54□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 TRIM61Q5EBN2 209 aa12.54□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 NANOGP8Q6NSW7 305 aa12.54□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 ZNF529Q6P280 563 aa12.54□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 UGT2A3Q6UWM9 527 aa12.54□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 OR9A2Q8NGT5 310 aa12.54□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 OR5P2Q8WZ92 322 aa12.54□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 ITFG2Q969R8 447 aa12.54□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 PRDM9Q9NQV7 894 aa12.54□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 VIRMAQ69YN4 1812 aaKnown RBP12.54□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 CDC6Q99741 560 aa12.54□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 GSTO2Q9H4Y5 243 aa12.54□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 MVB12BQ9H7P6 319 aa12.54□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 CHD5Q8TDI0 1954 aa12.54□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 FAM189BP81408 668 aa12.54□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 SNTB2Q13425 540 aaKnown RBP12.54□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 MAMDC2Q7Z304 686 aaPredicted RBP12.54□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 KIAA0907Q7Z7F0 614 aaPredicted RBP12.54□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 H1FXQ92522 213 aaKnown RBP12.54□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 ZNF566Q969W8 418 aa12.54□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 SLAMF9Q96A28 289 aa12.54□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 KLHL33A6NCF5 533 aa12.54□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 MEIS3P2A8K0S8 358 aa12.54□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 TBX10O75333 385 aa12.54□□□□□ -0.4
NPHP3-ACAD11-201ENST00000471702 EEF1AKMT2Q5JPI9 291 aaKnown RBP12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms