RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 IGLV2-14P01704 120 aa6.65□□□□□ -1.34
USP54-208ENST00000461520 HOXD4P09016 255 aaPredicted RBP6.65□□□□□ -1.34
USP54-208ENST00000461520 ACVR2AP27037 513 aa6.65□□□□□ -1.34
USP54-208ENST00000461520 SERPINB3P29508 390 aa6.65□□□□□ -1.34
USP54-208ENST00000461520 TYK2P29597 1187 aa6.65□□□□□ -1.34
USP54-208ENST00000461520 PHBP35232 272 aa6.65□□□□□ -1.34
USP54-208ENST00000461520 BSGP35613 385 aa6.65□□□□□ -1.34
USP54-208ENST00000461520 DNASE1L1P49184 302 aa6.65□□□□□ -1.34
USP54-208ENST00000461520 NR0B1P51843 470 aaKnown RBP6.65□□□□□ -1.34
USP54-208ENST00000461520 ELLP55199 621 aaPredicted RBP6.65□□□□□ -1.34
USP54-208ENST00000461520 HNRNPH2P55795 449 aaKnown RBP6.65□□□□□ -1.34
USP54-208ENST00000461520 NUP107P57740 925 aa6.65□□□□□ -1.34
USP54-208ENST00000461520 RPS13P62277 151 aaKnown RBP6.65□□□□□ -1.34
USP54-208ENST00000461520 TFF3Q07654 80 aa6.65□□□□□ -1.34
USP54-208ENST00000461520 PMPCAQ10713 525 aa6.65□□□□□ -1.34
USP54-208ENST00000461520 GTF2H2Q13888 395 aa6.65□□□□□ -1.34
USP54-208ENST00000461520 SLC10A1Q14973 349 aa6.65□□□□□ -1.34
USP54-208ENST00000461520 SLC22A10Q63ZE4 541 aa6.65□□□□□ -1.34
USP54-208ENST00000461520 C18orf63Q68DL7 685 aa6.65□□□□□ -1.34
USP54-208ENST00000461520 GTF2H2CQ6P1K8 395 aa6.65□□□□□ -1.34
USP54-208ENST00000461520 CYP20A1Q6UW02 462 aa6.65□□□□□ -1.34
USP54-208ENST00000461520 B3GNT6Q6ZMB0 384 aa6.65□□□□□ -1.34
USP54-208ENST00000461520 DGAT2L6Q6ZPD8 337 aa6.65□□□□□ -1.34
USP54-208ENST00000461520 TRILQ7L0X0 811 aa6.65□□□□□ -1.34
USP54-208ENST00000461520 SLC29A4Q7RTT9 530 aa6.65□□□□□ -1.34
USP54-208ENST00000461520 NUDT13Q86X67 352 aa6.65□□□□□ -1.34
USP54-208ENST00000461520 MYLK4Q86YV6 388 aaPredicted RBP6.65□□□□□ -1.34
USP54-208ENST00000461520 RNF175Q8N4F7 328 aa6.65□□□□□ -1.34
USP54-208ENST00000461520 RPRMLQ8N4K4 120 aa6.65□□□□□ -1.34
USP54-208ENST00000461520 L3MBTL4Q8NA19 623 aa6.65□□□□□ -1.34
USP54-208ENST00000461520 WDR20Q8TBZ3 569 aa6.65□□□□□ -1.34
USP54-208ENST00000461520 PPWD1Q96BP3 646 aaKnown RBP6.65□□□□□ -1.34
USP54-208ENST00000461520 SARAFQ96BY9 339 aa6.65□□□□□ -1.34
USP54-208ENST00000461520 SPACA9Q96E40 222 aaPredicted RBP6.65□□□□□ -1.34
USP54-208ENST00000461520 TTYH2Q9BSA4 534 aa6.65□□□□□ -1.34
USP54-208ENST00000461520 SORBS1Q9BX66 1292 aaKnown RBP6.65□□□□□ -1.34
USP54-208ENST00000461520 ZNF717Q9BY31 904 aaPredicted RBP6.65□□□□□ -1.34
USP54-208ENST00000461520 DDX31Q9H8H2 851 aaKnown RBP6.65□□□□□ -1.34
USP54-208ENST00000461520 PNPLA3Q9NST1 481 aa6.65□□□□□ -1.34
USP54-208ENST00000461520 QPCTLQ9NXS2 382 aa6.65□□□□□ -1.34
USP54-208ENST00000461520 TUBA8Q9NY65 449 aaPredicted RBP6.65□□□□□ -1.34
USP54-208ENST00000461520 CNIH4Q9P003 139 aa6.65□□□□□ -1.34
USP54-208ENST00000461520 ASB4Q9Y574 426 aa6.65□□□□□ -1.34
USP54-208ENST00000461520 PCDHGB3Q9Y5G1 929 aa6.65□□□□□ -1.34
USP54-208ENST00000461520 LIPGQ9Y5X9 500 aa6.65□□□□□ -1.34
USP54-208ENST00000461520 NAV3Q8IVL0 2385 aa6.65□□□□□ -1.35
USP54-208ENST00000461520 ATP6AP2A0A1C7CYW4 349 aa6.64□□□□□ -1.35
USP54-208ENST00000461520 NKX2-6A6NCS4 301 aa6.64□□□□□ -1.35
USP54-208ENST00000461520 TMPRSS11DO60235 418 aa6.64□□□□□ -1.35
USP54-208ENST00000461520 OR10H2O60403 315 aa6.64□□□□□ -1.35
USP54-208ENST00000461520 EEDO75530 441 aaKnown RBP6.64□□□□□ -1.35
USP54-208ENST00000461520 PRKRAO75569 313 aaKnown RBP6.64□□□□□ -1.35
USP54-208ENST00000461520 ATP6AP2O75787 350 aa6.64□□□□□ -1.35
USP54-208ENST00000461520 SEMA3DO95025 777 aa6.64□□□□□ -1.35
USP54-208ENST00000461520 CLDN9O95484 217 aa6.64□□□□□ -1.35
USP54-208ENST00000461520 ALDOAP04075 364 aaKnown RBP6.64□□□□□ -1.35
USP54-208ENST00000461520 RBP1P09455 135 aa6.64□□□□□ -1.35
USP54-208ENST00000461520 FAM58BPP0C7Q3 252 aa6.64□□□□□ -1.35
USP54-208ENST00000461520 SLC35E2P0CK97 266 aa6.64□□□□□ -1.35
USP54-208ENST00000461520 NR2F6P10588 404 aa6.64□□□□□ -1.35
USP54-208ENST00000461520 GABRA1P14867 456 aa6.64□□□□□ -1.35
USP54-208ENST00000461520 PIGAP37287 484 aa6.64□□□□□ -1.35
USP54-208ENST00000461520 ZFP36L2P47974 494 aaKnown RBP6.64□□□□□ -1.35
USP54-208ENST00000461520 SERPINB8P50452 374 aa6.64□□□□□ -1.35
USP54-208ENST00000461520 SLC37A1P57057 533 aa6.64□□□□□ -1.35
USP54-208ENST00000461520 HERVK_113P63132 956 aa6.64□□□□□ -1.35
USP54-208ENST00000461520 ERVK-8P63133 956 aa6.64□□□□□ -1.35
USP54-208ENST00000461520 CKAP4Q07065 602 aaKnown RBP6.64□□□□□ -1.35
USP54-208ENST00000461520 EBPQ15125 230 aaKnown RBP6.64□□□□□ -1.35
USP54-208ENST00000461520 UAP1Q16222 522 aaPredicted RBP6.64□□□□□ -1.35
USP54-208ENST00000461520 NTRK2Q16620 822 aa6.64□□□□□ -1.35
USP54-208ENST00000461520 C3orf36Q3SXR2 165 aa6.64□□□□□ -1.35
USP54-208ENST00000461520 FLYWCH1Q4VC44 716 aa6.64□□□□□ -1.35
USP54-208ENST00000461520 TECRLQ5HYJ1 363 aa6.64□□□□□ -1.35
USP54-208ENST00000461520 C10orf62Q5T681 223 aaPredicted RBP6.64□□□□□ -1.35
USP54-208ENST00000461520 WLSQ5T9L3 541 aa6.64□□□□□ -1.35
USP54-208ENST00000461520 OR52E8Q6IFG1 317 aa6.64□□□□□ -1.35
USP54-208ENST00000461520 C8orf74Q6P047 294 aa6.64□□□□□ -1.35
USP54-208ENST00000461520 SYT10Q6XYQ8 523 aa6.64□□□□□ -1.35
USP54-208ENST00000461520 GOLGA7Q7Z5G4 137 aa6.64□□□□□ -1.35
USP54-208ENST00000461520 CCDC71Q8IV32 467 aaPredicted RBP6.64□□□□□ -1.35
USP54-208ENST00000461520 CLYBLQ8N0X4 340 aa6.64□□□□□ -1.35
USP54-208ENST00000461520 TAGAPQ8N103 731 aa6.64□□□□□ -1.35
USP54-208ENST00000461520 LRRC25Q8N386 305 aaPredicted RBP6.64□□□□□ -1.35
USP54-208ENST00000461520 FBXW8Q8N3Y1 598 aa6.64□□□□□ -1.35
USP54-208ENST00000461520 OR5M9Q8NGP3 310 aa6.64□□□□□ -1.35
USP54-208ENST00000461520 OR10Q1Q8NGQ4 319 aa6.64□□□□□ -1.35
USP54-208ENST00000461520 RIT1Q92963 219 aa6.64□□□□□ -1.35
USP54-208ENST00000461520 ATP6V1E2Q96A05 226 aa6.64□□□□□ -1.35
USP54-208ENST00000461520 GPR78Q96P69 363 aa6.64□□□□□ -1.35
USP54-208ENST00000461520 GAL3ST4Q96RP7 486 aa6.64□□□□□ -1.35
USP54-208ENST00000461520 SERPINI1Q99574 410 aa6.64□□□□□ -1.35
USP54-208ENST00000461520 NTMT1Q9BV86 223 aa6.64□□□□□ -1.35
USP54-208ENST00000461520 CNPPD1Q9BV87 410 aa6.64□□□□□ -1.35
USP54-208ENST00000461520 SPATA5L1Q9BVQ7 753 aa6.64□□□□□ -1.35
USP54-208ENST00000461520 ERVK-6Q9BXR3 956 aa6.64□□□□□ -1.35
USP54-208ENST00000461520 UCK2Q9BZX2 261 aa6.64□□□□□ -1.35
USP54-208ENST00000461520 WWTR1Q9GZV5 400 aa6.64□□□□□ -1.35
USP54-208ENST00000461520 TSPYL1Q9H0U9 437 aa6.64□□□□□ -1.35
USP54-208ENST00000461520 ACKR4Q9NPB9 350 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms